Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 TPTE2P4-201ENST00000258589 1605 ntBASIC5.22□□□□□ -1.57
HIF3AQ9Y2N7 STAU2-225ENST00000523558 1603 ntTSL 2 BASIC5.22□□□□□ -1.57
HIF3AQ9Y2N7 NSD1-202ENST00000354179 12195 ntTSL 5 BASIC5.22□□□□□ -1.57
HIF3AQ9Y2N7 WDR72-202ENST00000396328 7507 ntAPPRIS P2 TSL 1 (best) BASIC5.22□□□□□ -1.57
HIF3AQ9Y2N7 CYLD-207ENST00000564326 3259 ntAPPRIS P1 TSL 5 BASIC5.22□□□□□ -1.57
HIF3AQ9Y2N7 RAP1GDS1-202ENST00000339360 2092 ntAPPRIS ALT1 TSL 1 (best) BASIC5.22□□□□□ -1.57
HIF3AQ9Y2N7 PATE4-201ENST00000457514 1983 ntAPPRIS P2 TSL 2 BASIC5.22□□□□□ -1.57
HIF3AQ9Y2N7 CEACAM1-201ENST00000161559 3519 ntAPPRIS P3 TSL 1 (best) BASIC5.22□□□□□ -1.57
HIF3AQ9Y2N7 AP005212.5-201ENST00000577614 3505 ntTSL 5 BASIC5.22□□□□□ -1.57
HIF3AQ9Y2N7 AC010127.1-209ENST00000447809 2305 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
HIF3AQ9Y2N7 TPTE2-205ENST00000400230 1793 ntAPPRIS P1 TSL 5 BASIC5.21□□□□□ -1.57
HIF3AQ9Y2N7 AK9-204ENST00000424296 6326 ntAPPRIS P1 TSL 5 BASIC5.21□□□□□ -1.57
HIF3AQ9Y2N7 AASDH-210ENST00000602986 3480 ntTSL 5 BASIC5.21□□□□□ -1.57
HIF3AQ9Y2N7 GAS2L3-202ENST00000537247 2742 ntTSL 2 BASIC5.21□□□□□ -1.58
HIF3AQ9Y2N7 EXPH5-201ENST00000265843 10187 ntAPPRIS P3 TSL 1 (best) BASIC5.21□□□□□ -1.58
HIF3AQ9Y2N7 DDHD2-202ENST00000517385 4113 ntTSL 2 BASIC5.21□□□□□ -1.58
HIF3AQ9Y2N7 NCOA1-206ENST00000407230 4745 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
HIF3AQ9Y2N7 FYB1-204ENST00000505428 2789 ntAPPRIS ALT2 TSL 1 (best) BASIC5.21□□□□□ -1.58
HIF3AQ9Y2N7 Y_RNA.424-201ENST00000384063 103 ntBASIC5.21□□□□□ -1.58
HIF3AQ9Y2N7 RNU1-136P-201ENST00000384181 164 ntBASIC5.21□□□□□ -1.58
HIF3AQ9Y2N7 U3.29-201ENST00000391296 212 ntBASIC5.21□□□□□ -1.58
HIF3AQ9Y2N7 DBIP1-201ENST00000401435 260 ntBASIC5.21□□□□□ -1.58
HIF3AQ9Y2N7 RPL31P2-201ENST00000413849 377 ntBASIC5.21□□□□□ -1.58
HIF3AQ9Y2N7 LINC00428-201ENST00000415620 227 ntTSL 5 BASIC5.21□□□□□ -1.58
HIF3AQ9Y2N7 AL354868.1-201ENST00000417077 482 ntBASIC5.21□□□□□ -1.58
HIF3AQ9Y2N7 LINC01203-201ENST00000419566 580 ntTSL 2 BASIC5.21□□□□□ -1.58
HIF3AQ9Y2N7 AL356277.2-201ENST00000421318 441 ntTSL 2 BASIC5.21□□□□□ -1.58
HIF3AQ9Y2N7 MRPS18CP6-201ENST00000423587 223 ntBASIC5.21□□□□□ -1.58
HIF3AQ9Y2N7 AL122034.1-201ENST00000427609 497 ntTSL 2 BASIC5.21□□□□□ -1.58
HIF3AQ9Y2N7 RPL23AP50-201ENST00000434149 455 ntBASIC5.21□□□□□ -1.58
HIF3AQ9Y2N7 AL590999.1-206ENST00000437947 436 ntTSL 3 BASIC5.21□□□□□ -1.58
HIF3AQ9Y2N7 USP12-AS1-201ENST00000440657 268 ntTSL 5 BASIC5.21□□□□□ -1.58
HIF3AQ9Y2N7 EIF5AP4-201ENST00000441206 465 ntBASIC5.21□□□□□ -1.58
HIF3AQ9Y2N7 AL353804.1-201ENST00000444482 451 ntTSL 5 BASIC5.21□□□□□ -1.58
HIF3AQ9Y2N7 PPIAP27-201ENST00000453800 265 ntBASIC5.21□□□□□ -1.58
HIF3AQ9Y2N7 AL353752.1-201ENST00000454946 260 ntBASIC5.21□□□□□ -1.58
HIF3AQ9Y2N7 SNORD97-201ENST00000459187 142 ntBASIC5.21□□□□□ -1.58
HIF3AQ9Y2N7 RPS3AP41-201ENST00000462701 778 ntBASIC5.21□□□□□ -1.58
HIF3AQ9Y2N7 DYNLL1P5-201ENST00000467158 270 ntBASIC5.21□□□□□ -1.58
HIF3AQ9Y2N7 GLUD1P3-202ENST00000508551 200 ntBASIC5.21□□□□□ -1.58
HIF3AQ9Y2N7 AC093815.1-201ENST00000508637 280 ntBASIC5.21□□□□□ -1.58
HIF3AQ9Y2N7 IGKV1OR2-1-201ENST00000514060 354 ntBASIC5.21□□□□□ -1.58
HIF3AQ9Y2N7 RNA5SP384-201ENST00000516615 116 ntBASIC5.21□□□□□ -1.58
HIF3AQ9Y2N7 RNU6-1332P-201ENST00000516666 104 ntBASIC5.21□□□□□ -1.58
HIF3AQ9Y2N7 RNU4-77P-201ENST00000516692 156 ntBASIC5.21□□□□□ -1.58
HIF3AQ9Y2N7 AC060775.1-201ENST00000518241 520 ntBASIC5.21□□□□□ -1.58
HIF3AQ9Y2N7 AC012400.1-201ENST00000518452 381 ntBASIC5.21□□□□□ -1.58
HIF3AQ9Y2N7 AP005436.2-201ENST00000528458 252 ntTSL 5 BASIC5.21□□□□□ -1.58
HIF3AQ9Y2N7 MITF-217ENST00000531774 1074 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
HIF3AQ9Y2N7 LINC01234-204ENST00000550905 589 ntTSL 3 BASIC5.21□□□□□ -1.58
HIF3AQ9Y2N7 LINC01269-201ENST00000553682 602 ntTSL 4 BASIC5.21□□□□□ -1.58
HIF3AQ9Y2N7 AC092078.1-201ENST00000558370 325 ntTSL 3 BASIC5.21□□□□□ -1.58
HIF3AQ9Y2N7 AC022196.1-202ENST00000559570 462 ntTSL 3 BASIC5.21□□□□□ -1.58
HIF3AQ9Y2N7 HMGB3P26-201ENST00000560051 582 ntBASIC5.21□□□□□ -1.58
HIF3AQ9Y2N7 NQO1-206ENST00000564043 892 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
HIF3AQ9Y2N7 AC092123.1-202ENST00000565310 405 ntTSL 3 BASIC5.21□□□□□ -1.58
HIF3AQ9Y2N7 AC106782.4-201ENST00000568264 210 ntBASIC5.21□□□□□ -1.58
HIF3AQ9Y2N7 MIR4776-2-201ENST00000580204 80 ntBASIC5.21□□□□□ -1.58
HIF3AQ9Y2N7 AC125232.2-201ENST00000592457 143 ntBASIC5.21□□□□□ -1.58
HIF3AQ9Y2N7 IGKV1OR2-118-201ENST00000603238 347 ntBASIC5.21□□□□□ -1.58
HIF3AQ9Y2N7 SNORD58B-201ENST00000607313 66 ntBASIC5.21□□□□□ -1.58
HIF3AQ9Y2N7 MIR6793-201ENST00000612376 63 ntBASIC5.21□□□□□ -1.58
HIF3AQ9Y2N7 5_8S_rRNA.1-201ENST00000614365 152 ntBASIC5.21□□□□□ -1.58
HIF3AQ9Y2N7 AC141273.2-201ENST00000618989 130 ntBASIC5.21□□□□□ -1.58
HIF3AQ9Y2N7 SNHG5-214ENST00000623001 598 ntTSL 2 BASIC5.21□□□□□ -1.58
HIF3AQ9Y2N7 LINC01620-204ENST00000623295 700 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
HIF3AQ9Y2N7 AC097495.1-201ENST00000637675 546 ntAPPRIS P1 TSL 5 BASIC5.21□□□□□ -1.58
HIF3AQ9Y2N7 TTC39C-201ENST00000304621 2304 ntAPPRIS P3 TSL 1 (best) BASIC5.21□□□□□ -1.58
HIF3AQ9Y2N7 ZNF227-208ENST00000589005 2943 ntTSL 2 BASIC5.21□□□□□ -1.58
HIF3AQ9Y2N7 ANAPC1P1-201ENST00000426186 2145 ntBASIC5.21□□□□□ -1.58
HIF3AQ9Y2N7 LIX1-AS1-201ENST00000504578 1793 ntTSL 5 BASIC5.21□□□□□ -1.58
HIF3AQ9Y2N7 AC114774.1-201ENST00000507410 1770 ntBASIC5.21□□□□□ -1.58
HIF3AQ9Y2N7 LIPI-201ENST00000344577 1652 ntAPPRIS P2 TSL 1 (best) BASIC5.21□□□□□ -1.58
HIF3AQ9Y2N7 DNAH5-201ENST00000265104 15633 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
HIF3AQ9Y2N7 AL731566.1-201ENST00000620490 1937 ntBASIC5.21□□□□□ -1.58
HIF3AQ9Y2N7 LINC00598-206ENST00000615947 3541 ntTSL 4 BASIC5.2□□□□□ -1.58
HIF3AQ9Y2N7 KAT6B-201ENST00000287239 8287 ntAPPRIS P3 TSL 1 (best) BASIC5.2□□□□□ -1.58
HIF3AQ9Y2N7 AFM-201ENST00000226355 2059 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
HIF3AQ9Y2N7 AC104966.1-201ENST00000467010 1464 ntBASIC5.2□□□□□ -1.58
HIF3AQ9Y2N7 MYBPC1-207ENST00000545503 3569 ntAPPRIS ALT2 TSL 1 (best) BASIC5.2□□□□□ -1.58
HIF3AQ9Y2N7 CYLC1-201ENST00000329312 2106 ntAPPRIS P3 TSL 1 (best) BASIC5.2□□□□□ -1.58
HIF3AQ9Y2N7 LINC02203-203ENST00000625989 1600 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
HIF3AQ9Y2N7 R3HDM1-202ENST00000409478 4272 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
HIF3AQ9Y2N7 TNFSF18-201ENST00000404377 2008 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
HIF3AQ9Y2N7 LINC02120-201ENST00000505518 2008 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
HIF3AQ9Y2N7 AC010615.1-201ENST00000594254 1764 ntBASIC5.2□□□□□ -1.58
HIF3AQ9Y2N7 ZNF734P-201ENST00000419494 1534 ntBASIC5.2□□□□□ -1.58
HIF3AQ9Y2N7 OR6C75-202ENST00000641576 4569 ntAPPRIS P1 BASIC5.2□□□□□ -1.58
HIF3AQ9Y2N7 Y_RNA.106-201ENST00000363189 100 ntBASIC5.2□□□□□ -1.58
HIF3AQ9Y2N7 Y_RNA.152-201ENST00000363578 100 ntBASIC5.2□□□□□ -1.58
HIF3AQ9Y2N7 RNU6-960P-201ENST00000364056 120 ntBASIC5.2□□□□□ -1.58
HIF3AQ9Y2N7 RNA5SP232-201ENST00000364144 119 ntBASIC5.2□□□□□ -1.58
HIF3AQ9Y2N7 RNVU1-3-201ENST00000364313 161 ntBASIC5.2□□□□□ -1.58
HIF3AQ9Y2N7 RN7SKP171-201ENST00000364417 303 ntBASIC5.2□□□□□ -1.58
HIF3AQ9Y2N7 RN7SKP292-201ENST00000365522 317 ntBASIC5.2□□□□□ -1.58
HIF3AQ9Y2N7 RN7SKP187-201ENST00000365536 330 ntBASIC5.2□□□□□ -1.58
HIF3AQ9Y2N7 AKAP14-204ENST00000371431 977 ntAPPRIS P3 TSL 1 (best) BASIC5.2□□□□□ -1.58
HIF3AQ9Y2N7 RNU2-23P-201ENST00000410545 195 ntBASIC5.2□□□□□ -1.58
HIF3AQ9Y2N7 RNU2-38P-201ENST00000410856 79 ntBASIC5.2□□□□□ -1.58
HIF3AQ9Y2N7 RNA5SP107-201ENST00000411358 122 ntBASIC5.2□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 77.3 ms