Protein–RNA interactions for Protein: Q9P1Q0

VPS54, Vacuolar protein sorting-associated protein 54, humanhuman

Predictions only

Length 977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54Q9P1Q0 RNU6-115P-201ENST00000364310 107 ntBASIC3.63□□□□□ -1.83
VPS54Q9P1Q0 AL133264.1-201ENST00000407157 562 ntBASIC3.63□□□□□ -1.83
VPS54Q9P1Q0 AC003075.1-202ENST00000419382 720 ntTSL 3 BASIC3.63□□□□□ -1.83
VPS54Q9P1Q0 OFD1P2Y-201ENST00000421895 1149 ntBASIC3.63□□□□□ -1.83
VPS54Q9P1Q0 AC024619.1-202ENST00000426489 495 ntTSL 3 BASIC3.63□□□□□ -1.83
VPS54Q9P1Q0 Z93242.1-201ENST00000427102 353 ntBASIC3.63□□□□□ -1.83
VPS54Q9P1Q0 AC012497.1-201ENST00000429392 575 ntBASIC3.63□□□□□ -1.83
VPS54Q9P1Q0 RPL31P54-201ENST00000429803 370 ntBASIC3.63□□□□□ -1.83
VPS54Q9P1Q0 AC005208.1-201ENST00000435112 599 ntTSL 3 BASIC3.63□□□□□ -1.83
VPS54Q9P1Q0 MTCYBP42-201ENST00000444653 1130 ntBASIC3.63□□□□□ -1.83
VPS54Q9P1Q0 AL391704.1-202ENST00000453889 874 ntTSL 3 BASIC3.63□□□□□ -1.83
VPS54Q9P1Q0 FCF1P6-201ENST00000456841 595 ntBASIC3.63□□□□□ -1.83
VPS54Q9P1Q0 AC092958.2-201ENST00000476987 492 ntTSL 3 BASIC3.63□□□□□ -1.83
VPS54Q9P1Q0 RPL32P34-201ENST00000486380 400 ntBASIC3.63□□□□□ -1.83
VPS54Q9P1Q0 AL365273.2-201ENST00000491114 492 ntAPPRIS P1 TSL 5 BASIC3.63□□□□□ -1.83
VPS54Q9P1Q0 SCOC-206ENST00000506322 687 ntAPPRIS ALT1 TSL 5 BASIC3.63□□□□□ -1.83
VPS54Q9P1Q0 AC079160.1-201ENST00000513489 739 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
VPS54Q9P1Q0 RNU6-276P-201ENST00000516114 96 ntBASIC3.63□□□□□ -1.83
VPS54Q9P1Q0 AC019227.1-201ENST00000526902 510 ntBASIC3.63□□□□□ -1.83
VPS54Q9P1Q0 AP000790.1-201ENST00000528891 737 ntBASIC3.63□□□□□ -1.83
VPS54Q9P1Q0 OR4A45P-201ENST00000529954 901 ntBASIC3.63□□□□□ -1.83
VPS54Q9P1Q0 LYZ-203ENST00000549690 669 ntTSL 2 BASIC3.63□□□□□ -1.83
VPS54Q9P1Q0 AL035071.2-201ENST00000565572 459 ntTSL 3 BASIC3.63□□□□□ -1.83
VPS54Q9P1Q0 AC107954.1-201ENST00000565906 727 ntBASIC3.63□□□□□ -1.83
VPS54Q9P1Q0 AC090616.5-202ENST00000582111 297 ntBASIC3.63□□□□□ -1.83
VPS54Q9P1Q0 UBL5P2-201ENST00000583788 219 ntBASIC3.63□□□□□ -1.83
VPS54Q9P1Q0 LAMTOR5-AS1-203ENST00000585330 463 ntTSL 2 BASIC3.63□□□□□ -1.83
VPS54Q9P1Q0 AP003973.1-201ENST00000604639 691 ntBASIC3.63□□□□□ -1.83
VPS54Q9P1Q0 AC068722.2-201ENST00000618734 544 ntBASIC3.63□□□□□ -1.83
VPS54Q9P1Q0 PLCE1-AS2-213ENST00000620469 432 ntTSL 5 BASIC3.63□□□□□ -1.83
VPS54Q9P1Q0 AC073130.1-201ENST00000457033 1958 ntTSL 2 BASIC3.63□□□□□ -1.83
VPS54Q9P1Q0 PPP2R5C-226ENST00000557095 1307 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
VPS54Q9P1Q0 LRMP-221ENST00000636465 4540 ntAPPRIS ALT2 TSL 5 BASIC3.63□□□□□ -1.83
VPS54Q9P1Q0 AC138915.3-201ENST00000562908 1389 ntBASIC3.63□□□□□ -1.83
VPS54Q9P1Q0 CENPJ-205ENST00000545981 4299 ntTSL 2 BASIC3.62□□□□□ -1.83
VPS54Q9P1Q0 AL157700.1-201ENST00000561973 1432 ntBASIC3.62□□□□□ -1.83
VPS54Q9P1Q0 GYPE-201ENST00000358615 1684 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
VPS54Q9P1Q0 ADAMTS9-AS1-207ENST00000594810 3609 ntTSL 4 BASIC3.62□□□□□ -1.83
VPS54Q9P1Q0 TUBD1-214ENST00000592426 1460 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
VPS54Q9P1Q0 SRP72P2-201ENST00000344851 1979 ntBASIC3.62□□□□□ -1.83
VPS54Q9P1Q0 YWHAZ-211ENST00000457309 3007 ntAPPRIS P1 TSL 2 BASIC3.62□□□□□ -1.83
VPS54Q9P1Q0 MIS12-201ENST00000381165 2505 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
VPS54Q9P1Q0 MTRNR2L10-201ENST00000545075 1530 ntAPPRIS P1 BASIC3.62□□□□□ -1.83
VPS54Q9P1Q0 MIR217-201ENST00000384817 110 ntBASIC3.62□□□□□ -1.83
VPS54Q9P1Q0 U3.19-201ENST00000390893 196 ntBASIC3.62□□□□□ -1.83
VPS54Q9P1Q0 AL121978.1-201ENST00000402778 359 ntBASIC3.62□□□□□ -1.83
VPS54Q9P1Q0 AL136133.1-201ENST00000413694 376 ntBASIC3.62□□□□□ -1.83
VPS54Q9P1Q0 MTND4P3-201ENST00000417829 541 ntBASIC3.62□□□□□ -1.83
VPS54Q9P1Q0 AC245291.1-201ENST00000419501 328 ntBASIC3.62□□□□□ -1.83
VPS54Q9P1Q0 OFD1P18Y-201ENST00000420889 959 ntBASIC3.62□□□□□ -1.83
VPS54Q9P1Q0 AL354692.1-201ENST00000423044 315 ntBASIC3.62□□□□□ -1.83
VPS54Q9P1Q0 AC005345.1-201ENST00000431868 217 ntBASIC3.62□□□□□ -1.83
VPS54Q9P1Q0 AP000855.1-201ENST00000433210 636 ntTSL 2 BASIC3.62□□□□□ -1.83
VPS54Q9P1Q0 REG1CP-203ENST00000434852 460 ntTSL 4 BASIC3.62□□□□□ -1.83
VPS54Q9P1Q0 HSD52-202ENST00000436225 772 ntTSL 3 BASIC3.62□□□□□ -1.83
VPS54Q9P1Q0 AC006028.1-201ENST00000438379 402 ntBASIC3.62□□□□□ -1.83
VPS54Q9P1Q0 AC108734.1-201ENST00000439549 399 ntBASIC3.62□□□□□ -1.83
VPS54Q9P1Q0 AC044781.1-201ENST00000446193 570 ntTSL 3 BASIC3.62□□□□□ -1.83
VPS54Q9P1Q0 AL365204.2-201ENST00000446754 687 ntTSL 2 BASIC3.62□□□□□ -1.83
VPS54Q9P1Q0 NPM1P49-201ENST00000448027 714 ntBASIC3.62□□□□□ -1.83
VPS54Q9P1Q0 HMGB3P8-201ENST00000449709 577 ntBASIC3.62□□□□□ -1.83
VPS54Q9P1Q0 PLCB1-IT1-202ENST00000451443 251 ntTSL 3 BASIC3.62□□□□□ -1.83
VPS54Q9P1Q0 ELOCP23-201ENST00000452014 332 ntBASIC3.62□□□□□ -1.83
VPS54Q9P1Q0 DCLRE1CP1-201ENST00000454630 470 ntBASIC3.62□□□□□ -1.83
VPS54Q9P1Q0 TET2-AS1-201ENST00000515414 537 ntTSL 5 BASIC3.62□□□□□ -1.83
VPS54Q9P1Q0 RNA5SP217-201ENST00000515959 91 ntBASIC3.62□□□□□ -1.83
VPS54Q9P1Q0 LINC02399-201ENST00000547094 400 ntTSL 2 BASIC3.62□□□□□ -1.83
VPS54Q9P1Q0 AC063947.1-201ENST00000549036 557 ntTSL 4 BASIC3.62□□□□□ -1.83
VPS54Q9P1Q0 AC023908.1-201ENST00000559899 567 ntTSL 4 BASIC3.62□□□□□ -1.83
VPS54Q9P1Q0 AC106745.1-201ENST00000566798 464 ntTSL 2 BASIC3.62□□□□□ -1.83
VPS54Q9P1Q0 GOLGA8M-203ENST00000568033 557 ntTSL 4 BASIC3.62□□□□□ -1.83
VPS54Q9P1Q0 FOPNL-208ENST00000575744 565 ntTSL 4 BASIC3.62□□□□□ -1.83
VPS54Q9P1Q0 AC015908.4-201ENST00000582334 575 ntTSL 4 BASIC3.62□□□□□ -1.83
VPS54Q9P1Q0 AC025588.3-201ENST00000604182 274 ntBASIC3.62□□□□□ -1.83
VPS54Q9P1Q0 AC097717.1-250ENST00000608498 273 ntTSL 5 BASIC3.62□□□□□ -1.83
VPS54Q9P1Q0 AL121652.1-201ENST00000608851 448 ntBASIC3.62□□□□□ -1.83
VPS54Q9P1Q0 C1orf185-204ENST00000612209 899 ntAPPRIS ALT2 TSL 2 BASIC3.62□□□□□ -1.83
VPS54Q9P1Q0 AL592148.2-201ENST00000612210 372 ntBASIC3.62□□□□□ -1.83
VPS54Q9P1Q0 AC138932.5-201ENST00000617759 563 ntBASIC3.62□□□□□ -1.83
VPS54Q9P1Q0 AC018692.3-201ENST00000623929 123 ntBASIC3.62□□□□□ -1.83
VPS54Q9P1Q0 AC087821.2-201ENST00000637086 450 ntBASIC3.62□□□□□ -1.83
VPS54Q9P1Q0 ADGRV1-201ENST00000405460 19557 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
VPS54Q9P1Q0 RNF6-201ENST00000346166 3282 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
VPS54Q9P1Q0 ZNF37BP-203ENST00000452306 1352 ntBASIC3.62□□□□□ -1.83
VPS54Q9P1Q0 FMN2-207ENST00000545751 1913 ntTSL 5 BASIC3.62□□□□□ -1.83
VPS54Q9P1Q0 UBE2W-203ENST00000517608 8426 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
VPS54Q9P1Q0 AC091152.2-201ENST00000591628 2569 ntBASIC3.61□□□□□ -1.83
VPS54Q9P1Q0 ZNF734P-201ENST00000419494 1534 ntBASIC3.61□□□□□ -1.83
VPS54Q9P1Q0 UGT2A2-201ENST00000604021 1544 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
VPS54Q9P1Q0 TAS2R10-201ENST00000240619 1042 ntAPPRIS P1 BASIC3.61□□□□□ -1.83
VPS54Q9P1Q0 OR1S2-201ENST00000302592 978 ntBASIC3.61□□□□□ -1.83
VPS54Q9P1Q0 ANKRD36P1-201ENST00000344424 659 ntBASIC3.61□□□□□ -1.83
VPS54Q9P1Q0 OR2M2-201ENST00000359682 1044 ntAPPRIS P1 BASIC3.61□□□□□ -1.83
VPS54Q9P1Q0 MIR122-201ENST00000385044 85 ntBASIC3.61□□□□□ -1.83
VPS54Q9P1Q0 Y_RNA.578-201ENST00000390903 88 ntBASIC3.61□□□□□ -1.83
VPS54Q9P1Q0 TMSB4XP8-201ENST00000402089 135 ntBASIC3.61□□□□□ -1.83
VPS54Q9P1Q0 CoTC_ribozyme.1-201ENST00000408104 192 ntBASIC3.61□□□□□ -1.83
VPS54Q9P1Q0 TMSB4XP6-201ENST00000415187 135 ntBASIC3.61□□□□□ -1.83
VPS54Q9P1Q0 AL449283.1-202ENST00000418249 604 ntBASIC3.61□□□□□ -1.83
VPS54Q9P1Q0 AL353678.1-201ENST00000422735 741 ntBASIC3.61□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 125.1 ms