Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 MALAT1-206ENST00000612781 234 ntTSL 3 BASIC4.61□□□□□ -1.67
TDP1Q9NUW8 LGALS13-204ENST00000621475 494 ntAPPRIS ALT2 TSL 5 BASIC4.61□□□□□ -1.67
TDP1Q9NUW8 AL732618.1-201ENST00000623251 301 ntBASIC4.61□□□□□ -1.67
TDP1Q9NUW8 MIR6863-201ENST00000636112 90 ntBASIC4.61□□□□□ -1.67
TDP1Q9NUW8 NANOGNB-202ENST00000640040 824 ntAPPRIS ALT2 TSL 5 BASIC4.61□□□□□ -1.67
TDP1Q9NUW8 COA1-220ENST00000640232 192 ntAPPRIS ALT2 TSL 3 BASIC4.61□□□□□ -1.67
TDP1Q9NUW8 PTPRD-203ENST00000381196 9911 ntAPPRIS P1 TSL 5 BASIC4.61□□□□□ -1.67
TDP1Q9NUW8 RPS6KA6-204ENST00000620340 8169 ntTSL 5 BASIC4.61□□□□□ -1.67
TDP1Q9NUW8 C6orf10-205ENST00000527965 2076 ntAPPRIS ALT2 TSL 2 BASIC4.61□□□□□ -1.67
TDP1Q9NUW8 KIAA0586-202ENST00000354386 5226 ntAPPRIS ALT2 TSL 2 BASIC4.61□□□□□ -1.67
TDP1Q9NUW8 FAM204A-203ENST00000369183 13889 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
TDP1Q9NUW8 PPIG-207ENST00000448752 2498 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
TDP1Q9NUW8 CEP152-203ENST00000399334 5097 ntAPPRIS P3 TSL 1 (best) BASIC4.61□□□□□ -1.67
TDP1Q9NUW8 C15orf41-212ENST00000567389 2618 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
TDP1Q9NUW8 ANO3-204ENST00000531568 3117 ntAPPRIS ALT2 TSL 2 BASIC4.6□□□□□ -1.67
TDP1Q9NUW8 GABRG2-217ENST00000639384 5360 ntTSL 5 BASIC4.6□□□□□ -1.67
TDP1Q9NUW8 FSBP-203ENST00000611249 2181 ntAPPRIS P1 TSL 5 BASIC4.6□□□□□ -1.67
TDP1Q9NUW8 SCN1A-202ENST00000375405 8097 ntAPPRIS P3 TSL 5 BASIC4.6□□□□□ -1.67
TDP1Q9NUW8 RNU6-97P-201ENST00000363387 104 ntBASIC4.6□□□□□ -1.67
TDP1Q9NUW8 RNU1-132P-201ENST00000364300 164 ntBASIC4.6□□□□□ -1.67
TDP1Q9NUW8 RNA5SP515-201ENST00000364570 118 ntBASIC4.6□□□□□ -1.67
TDP1Q9NUW8 TRAJ4-201ENST00000390533 63 ntAPPRIS P1 BASIC4.6□□□□□ -1.67
TDP1Q9NUW8 RN7SKP263-201ENST00000411194 309 ntBASIC4.6□□□□□ -1.67
TDP1Q9NUW8 EIF4A1P3-201ENST00000411521 244 ntBASIC4.6□□□□□ -1.67
TDP1Q9NUW8 LINC01492-202ENST00000425157 659 ntTSL 5 BASIC4.6□□□□□ -1.67
TDP1Q9NUW8 AC239803.1-202ENST00000432038 590 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
TDP1Q9NUW8 AC078845.1-202ENST00000435996 733 ntTSL 3 BASIC4.6□□□□□ -1.67
TDP1Q9NUW8 AC084149.1-201ENST00000437233 284 ntTSL 5 BASIC4.6□□□□□ -1.67
TDP1Q9NUW8 AL050349.1-201ENST00000441029 401 ntTSL 2 BASIC4.6□□□□□ -1.67
TDP1Q9NUW8 AL162386.2-201ENST00000442428 457 ntTSL 3 BASIC4.6□□□□□ -1.67
TDP1Q9NUW8 TDGF1P1-201ENST00000445734 527 ntBASIC4.6□□□□□ -1.67
TDP1Q9NUW8 AP000844.1-201ENST00000446631 577 ntTSL 3 BASIC4.6□□□□□ -1.67
TDP1Q9NUW8 LINC01150-201ENST00000455671 315 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
TDP1Q9NUW8 MTCO3P38-201ENST00000468910 766 ntBASIC4.6□□□□□ -1.67
TDP1Q9NUW8 AL121769.1-201ENST00000469473 401 ntBASIC4.6□□□□□ -1.67
TDP1Q9NUW8 RPL7P19-201ENST00000469948 618 ntBASIC4.6□□□□□ -1.67
TDP1Q9NUW8 IGKV2D-30-201ENST00000474213 395 ntAPPRIS P1 BASIC4.6□□□□□ -1.67
TDP1Q9NUW8 RBM43P1-201ENST00000476891 1081 ntBASIC4.6□□□□□ -1.67
TDP1Q9NUW8 AC041039.1-201ENST00000485656 536 ntBASIC4.6□□□□□ -1.67
TDP1Q9NUW8 MTAPP1-201ENST00000489154 819 ntBASIC4.6□□□□□ -1.67
TDP1Q9NUW8 AC093752.2-201ENST00000506942 573 ntTSL 5 BASIC4.6□□□□□ -1.67
TDP1Q9NUW8 HMGB3P16-201ENST00000508037 287 ntBASIC4.6□□□□□ -1.67
TDP1Q9NUW8 LINC02383-201ENST00000508563 582 ntTSL 3 BASIC4.6□□□□□ -1.67
TDP1Q9NUW8 RNA5SP497-201ENST00000516081 97 ntBASIC4.6□□□□□ -1.67
TDP1Q9NUW8 AF186190.1-201ENST00000517470 480 ntBASIC4.6□□□□□ -1.67
TDP1Q9NUW8 AL358937.1-201ENST00000524512 336 ntTSL 2 BASIC4.6□□□□□ -1.67
TDP1Q9NUW8 AC025884.1-201ENST00000556034 378 ntBASIC4.6□□□□□ -1.67
TDP1Q9NUW8 PWRN1-202ENST00000562501 642 ntTSL 3 BASIC4.6□□□□□ -1.67
TDP1Q9NUW8 MIR3936-201ENST00000584304 110 ntBASIC4.6□□□□□ -1.67
TDP1Q9NUW8 AL157786.1-204ENST00000594870 506 ntTSL 3 BASIC4.6□□□□□ -1.67
TDP1Q9NUW8 AC011468.4-201ENST00000603942 409 ntBASIC4.6□□□□□ -1.67
TDP1Q9NUW8 AC092954.2-201ENST00000609103 430 ntBASIC4.6□□□□□ -1.67
TDP1Q9NUW8 AC138393.3-201ENST00000618397 573 ntTSL 3 BASIC4.6□□□□□ -1.67
TDP1Q9NUW8 MIR6891-201ENST00000618788 93 ntBASIC4.6□□□□□ -1.67
TDP1Q9NUW8 AL513314.2-204ENST00000619187 459 ntTSL 5 BASIC4.6□□□□□ -1.67
TDP1Q9NUW8 MIR4496-201ENST00000635896 61 ntBASIC4.6□□□□□ -1.67
TDP1Q9NUW8 ARHGAP21-218ENST00000636789 4210 ntTSL 2 BASIC4.6□□□□□ -1.67
TDP1Q9NUW8 MTND5P33-201ENST00000571250 1450 ntBASIC4.6□□□□□ -1.67
TDP1Q9NUW8 RAP1B-201ENST00000250559 13438 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
TDP1Q9NUW8 ZFAND6-212ENST00000559775 1602 ntAPPRIS P1 TSL 2 BASIC4.6□□□□□ -1.67
TDP1Q9NUW8 ZNF66-201ENST00000344519 1745 ntAPPRIS P1 TSL 3 BASIC4.6□□□□□ -1.67
TDP1Q9NUW8 ZNF639-206ENST00000484866 1730 ntAPPRIS P1 TSL 2 BASIC4.6□□□□□ -1.67
TDP1Q9NUW8 ASNSP1-201ENST00000518311 1939 ntBASIC4.6□□□□□ -1.67
TDP1Q9NUW8 RXFP1-204ENST00000423548 3930 ntTSL 2 BASIC4.6□□□□□ -1.67
TDP1Q9NUW8 STAG2-204ENST00000371157 5991 ntAPPRIS P3 TSL 1 (best) BASIC4.6□□□□□ -1.67
TDP1Q9NUW8 PCDH9-203ENST00000456367 5072 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
TDP1Q9NUW8 BCLAF1P2-201ENST00000624956 2609 ntBASIC4.59□□□□□ -1.67
TDP1Q9NUW8 TRGC1-201ENST00000443402 2730 ntAPPRIS P1 BASIC4.59□□□□□ -1.67
TDP1Q9NUW8 RC3H1-201ENST00000258349 10988 ntAPPRIS P3 TSL 1 (best) BASIC4.59□□□□□ -1.67
TDP1Q9NUW8 ASB5-201ENST00000296525 3031 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.67
TDP1Q9NUW8 SCEL-205ENST00000535157 3096 ntAPPRIS ALT2 TSL 2 BASIC4.59□□□□□ -1.67
TDP1Q9NUW8 ZFPM2-203ENST00000517361 3300 ntTSL 2 BASIC4.59□□□□□ -1.67
TDP1Q9NUW8 MIR99AHG-219ENST00000619222 3476 ntTSL 2 BASIC4.59□□□□□ -1.67
TDP1Q9NUW8 MMP16-201ENST00000286614 11558 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.67
TDP1Q9NUW8 PCDH11X-204ENST00000373088 4069 ntAPPRIS ALT2 TSL 1 (best) BASIC4.59□□□□□ -1.67
TDP1Q9NUW8 TEX35-202ENST00000367639 785 ntAPPRIS ALT2 TSL 1 (best) BASIC4.59□□□□□ -1.67
TDP1Q9NUW8 ELF2-203ENST00000379550 3278 ntTSL 5 BASIC4.59□□□□□ -1.67
TDP1Q9NUW8 RNU6-339P-201ENST00000384310 107 ntBASIC4.59□□□□□ -1.67
TDP1Q9NUW8 SNORA57.1-201ENST00000391227 145 ntBASIC4.59□□□□□ -1.67
TDP1Q9NUW8 CCNG1P1-201ENST00000406783 885 ntBASIC4.59□□□□□ -1.67
TDP1Q9NUW8 AC118345.1-201ENST00000411785 366 ntTSL 3 BASIC4.59□□□□□ -1.67
TDP1Q9NUW8 Z93403.1-201ENST00000411879 895 ntTSL 5 BASIC4.59□□□□□ -1.67
TDP1Q9NUW8 AL136368.1-201ENST00000416249 401 ntTSL 2 BASIC4.59□□□□□ -1.67
TDP1Q9NUW8 AL139095.3-201ENST00000419672 1203 ntBASIC4.59□□□□□ -1.67
TDP1Q9NUW8 AC064875.1-202ENST00000421112 561 ntTSL 4 BASIC4.59□□□□□ -1.67
TDP1Q9NUW8 PIGFP2-201ENST00000421400 651 ntBASIC4.59□□□□□ -1.67
TDP1Q9NUW8 PSMA2P3-201ENST00000429685 675 ntBASIC4.59□□□□□ -1.67
TDP1Q9NUW8 EZH2P1-201ENST00000431167 291 ntBASIC4.59□□□□□ -1.67
TDP1Q9NUW8 AL161725.2-201ENST00000442442 403 ntTSL 3 BASIC4.59□□□□□ -1.67
TDP1Q9NUW8 AC114755.5-201ENST00000447760 831 ntBASIC4.59□□□□□ -1.67
TDP1Q9NUW8 Z99127.3-201ENST00000448158 395 ntBASIC4.59□□□□□ -1.67
TDP1Q9NUW8 FABP3P2-201ENST00000453169 399 ntBASIC4.59□□□□□ -1.67
TDP1Q9NUW8 AC146507.1-201ENST00000468335 354 ntBASIC4.59□□□□□ -1.67
TDP1Q9NUW8 AC139769.1-204ENST00000472297 1931 ntBASIC4.59□□□□□ -1.67
TDP1Q9NUW8 Z84488.1-201ENST00000476099 530 ntTSL 2 BASIC4.59□□□□□ -1.67
TDP1Q9NUW8 AC008629.1-202ENST00000504820 525 ntTSL 4 BASIC4.59□□□□□ -1.67
TDP1Q9NUW8 NPM1P41-201ENST00000512920 831 ntBASIC4.59□□□□□ -1.67
TDP1Q9NUW8 PCAT4-202ENST00000514836 373 ntTSL 3 BASIC4.59□□□□□ -1.67
TDP1Q9NUW8 RN7SKP234-201ENST00000517173 224 ntBASIC4.59□□□□□ -1.67
TDP1Q9NUW8 TRAV8-5-201ENST00000537369 341 ntBASIC4.59□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 107.8 ms