Protein–RNA interactions for Protein: Q9NNX9

VCX3A, Variable charge X-linked protein 3, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3AQ9NNX9 SNORD56.5-201ENST00000364281 72 ntBASIC2.74□□□□□ -1.97
VCX3AQ9NNX9 RNU1-138P-201ENST00000384093 164 ntBASIC2.74□□□□□ -1.97
VCX3AQ9NNX9 SNORD17-201ENST00000390930 237 ntBASIC2.74□□□□□ -1.97
VCX3AQ9NNX9 U3.29-201ENST00000391296 212 ntBASIC2.74□□□□□ -1.97
VCX3AQ9NNX9 RNA5SP317-201ENST00000410176 116 ntBASIC2.74□□□□□ -1.97
VCX3AQ9NNX9 RNA5SP181-201ENST00000410246 98 ntBASIC2.74□□□□□ -1.97
VCX3AQ9NNX9 RNA5SP311-201ENST00000411290 116 ntBASIC2.74□□□□□ -1.97
VCX3AQ9NNX9 SLC8A1-AS1-201ENST00000413479 800 ntTSL 5 BASIC2.74□□□□□ -1.97
VCX3AQ9NNX9 LINC01709-201ENST00000415532 634 ntTSL 5 BASIC2.74□□□□□ -1.97
VCX3AQ9NNX9 LINC00845-201ENST00000417931 696 ntTSL 2 BASIC2.74□□□□□ -1.97
VCX3AQ9NNX9 AC099677.1-201ENST00000420575 175 ntBASIC2.74□□□□□ -1.97
VCX3AQ9NNX9 AC009276.1-201ENST00000422042 253 ntTSL 5 BASIC2.74□□□□□ -1.97
VCX3AQ9NNX9 EBLN1-201ENST00000422359 1208 ntAPPRIS P1 BASIC2.74□□□□□ -1.97
VCX3AQ9NNX9 RPS6P14-201ENST00000425165 719 ntBASIC2.74□□□□□ -1.97
VCX3AQ9NNX9 RPL31P54-201ENST00000429803 370 ntBASIC2.74□□□□□ -1.97
VCX3AQ9NNX9 AL031123.1-201ENST00000432823 568 ntTSL 2 BASIC2.74□□□□□ -1.97
VCX3AQ9NNX9 AC006037.1-201ENST00000437967 287 ntTSL 5 BASIC2.74□□□□□ -1.97
VCX3AQ9NNX9 UBBP3-201ENST00000445497 241 ntBASIC2.74□□□□□ -1.97
VCX3AQ9NNX9 AC099342.1-201ENST00000446399 1124 ntTSL 3 BASIC2.74□□□□□ -1.97
VCX3AQ9NNX9 AC114755.5-201ENST00000447760 831 ntBASIC2.74□□□□□ -1.97
VCX3AQ9NNX9 AC092162.2-204ENST00000451851 566 ntTSL 4 BASIC2.74□□□□□ -1.97
VCX3AQ9NNX9 RNA5SP315-201ENST00000516340 116 ntBASIC2.74□□□□□ -1.97
VCX3AQ9NNX9 RNA5SP312-201ENST00000517068 116 ntBASIC2.74□□□□□ -1.97
VCX3AQ9NNX9 AC104233.2-201ENST00000518922 414 ntTSL 3 BASIC2.74□□□□□ -1.97
VCX3AQ9NNX9 AC109466.1-214ENST00000522762 583 ntTSL 2 BASIC2.74□□□□□ -1.97
VCX3AQ9NNX9 SPINK7-205ENST00000523535 299 ntTSL 2 BASIC2.74□□□□□ -1.97
VCX3AQ9NNX9 RGS5-218ENST00000526176 574 ntTSL 4 BASIC2.74□□□□□ -1.97
VCX3AQ9NNX9 IL18-204ENST00000528832 795 ntAPPRIS P3 TSL 3 BASIC2.74□□□□□ -1.97
VCX3AQ9NNX9 AC091053.2-201ENST00000534169 537 ntTSL 4 BASIC2.74□□□□□ -1.97
VCX3AQ9NNX9 DNAJC8P1-201ENST00000554535 372 ntBASIC2.74□□□□□ -1.97
VCX3AQ9NNX9 AL049835.1-201ENST00000555850 514 ntTSL 3 BASIC2.74□□□□□ -1.97
VCX3AQ9NNX9 AC104002.1-201ENST00000557025 380 ntTSL 3 BASIC2.74□□□□□ -1.97
VCX3AQ9NNX9 ST20-203ENST00000562759 694 ntAPPRIS P1 TSL 2 BASIC2.74□□□□□ -1.97
VCX3AQ9NNX9 BPTFP1-201ENST00000579209 492 ntBASIC2.74□□□□□ -1.97
VCX3AQ9NNX9 MIR2682-201ENST00000580305 110 ntBASIC2.74□□□□□ -1.97
VCX3AQ9NNX9 AC015908.4-201ENST00000582334 575 ntTSL 4 BASIC2.74□□□□□ -1.97
VCX3AQ9NNX9 AC002546.2-201ENST00000585537 584 ntTSL 3 BASIC2.74□□□□□ -1.97
VCX3AQ9NNX9 AC100781.1-203ENST00000598549 399 ntTSL 5 BASIC2.74□□□□□ -1.97
VCX3AQ9NNX9 AC004160.1-210ENST00000599875 689 ntTSL 5 BASIC2.74□□□□□ -1.97
VCX3AQ9NNX9 AC040174.2-201ENST00000602701 465 ntBASIC2.74□□□□□ -1.97
VCX3AQ9NNX9 DUXAP4-201ENST00000603046 613 ntBASIC2.74□□□□□ -1.97
VCX3AQ9NNX9 AC090115.4-201ENST00000609970 188 ntBASIC2.74□□□□□ -1.97
VCX3AQ9NNX9 AL354696.2-202ENST00000620300 613 ntTSL 2 BASIC2.74□□□□□ -1.97
VCX3AQ9NNX9 AC009318.4-201ENST00000620496 486 ntBASIC2.74□□□□□ -1.97
VCX3AQ9NNX9 AP006248.3-201ENST00000623580 594 ntBASIC2.74□□□□□ -1.97
VCX3AQ9NNX9 C8orf89-202ENST00000624510 658 ntAPPRIS P2 TSL 3 BASIC2.74□□□□□ -1.97
VCX3AQ9NNX9 AC139713.2-210ENST00000641741 992 ntBASIC2.74□□□□□ -1.97
VCX3AQ9NNX9 ZNF732-202ENST00000619749 2179 ntAPPRIS ALT2 TSL 2 BASIC2.74□□□□□ -1.97
VCX3AQ9NNX9 ANKAR-209ENST00000520309 4410 ntAPPRIS P1 TSL 5 BASIC2.74□□□□□ -1.97
VCX3AQ9NNX9 AGTPBP1-205ENST00000376083 4208 ntAPPRIS P1 TSL 1 (best) BASIC2.74□□□□□ -1.97
VCX3AQ9NNX9 ROCK2-203ENST00000401753 4017 ntTSL 1 (best) BASIC2.73□□□□□ -1.97
VCX3AQ9NNX9 NPVF-201ENST00000222674 1190 ntAPPRIS P1 TSL 1 (best) BASIC2.73□□□□□ -1.97
VCX3AQ9NNX9 AL121657.1-201ENST00000327215 531 ntBASIC2.73□□□□□ -1.97
VCX3AQ9NNX9 SPRR2E-201ENST00000368750 678 ntAPPRIS P1 TSL 1 (best) BASIC2.73□□□□□ -1.97
VCX3AQ9NNX9 SNORD3H-201ENST00000384486 214 ntBASIC2.73□□□□□ -1.97
VCX3AQ9NNX9 MIR181A2-201ENST00000384863 110 ntBASIC2.73□□□□□ -1.97
VCX3AQ9NNX9 ATG3P1-201ENST00000419507 911 ntBASIC2.73□□□□□ -1.97
VCX3AQ9NNX9 AL035423.1-201ENST00000420331 213 ntBASIC2.73□□□□□ -1.97
VCX3AQ9NNX9 LINC01040-201ENST00000425048 666 ntTSL 2 BASIC2.73□□□□□ -1.97
VCX3AQ9NNX9 POU6F2-AS1-201ENST00000433519 381 ntTSL 3 BASIC2.73□□□□□ -1.97
VCX3AQ9NNX9 PATE1-202ENST00000437148 457 ntAPPRIS ALT2 TSL 1 (best) BASIC2.73□□□□□ -1.97
VCX3AQ9NNX9 AC013727.2-201ENST00000447761 545 ntTSL 4 BASIC2.73□□□□□ -1.97
VCX3AQ9NNX9 AL359073.1-201ENST00000448036 403 ntBASIC2.73□□□□□ -1.97
VCX3AQ9NNX9 OR51B8P-201ENST00000449892 769 ntBASIC2.73□□□□□ -1.97
VCX3AQ9NNX9 AC008155.2-201ENST00000464337 397 ntBASIC2.73□□□□□ -1.97
VCX3AQ9NNX9 IGKV2-30-201ENST00000468494 390 ntAPPRIS P1 BASIC2.73□□□□□ -1.97
VCX3AQ9NNX9 AC025518.1-201ENST00000479856 347 ntBASIC2.73□□□□□ -1.97
VCX3AQ9NNX9 AC132825.2-201ENST00000483901 504 ntTSL 5 BASIC2.73□□□□□ -1.97
VCX3AQ9NNX9 CRISP1-203ENST00000505118 1296 ntAPPRIS P1 TSL 1 (best) BASIC2.73□□□□□ -1.97
VCX3AQ9NNX9 UQCRB-202ENST00000517523 515 ntTSL 2 BASIC2.73□□□□□ -1.97
VCX3AQ9NNX9 AC124293.1-201ENST00000530034 493 ntBASIC2.73□□□□□ -1.97
VCX3AQ9NNX9 AC018630.1-201ENST00000541376 925 ntBASIC2.73□□□□□ -1.97
VCX3AQ9NNX9 SYNE2-210ENST00000553455 674 ntTSL 2 BASIC2.73□□□□□ -1.97
VCX3AQ9NNX9 LINC01467-201ENST00000554211 1187 ntTSL 1 (best) BASIC2.73□□□□□ -1.97
VCX3AQ9NNX9 MED28P6-201ENST00000558776 231 ntBASIC2.73□□□□□ -1.97
VCX3AQ9NNX9 MAFTRR-204ENST00000568389 506 ntTSL 4 BASIC2.73□□□□□ -1.97
VCX3AQ9NNX9 C15orf65-201ENST00000569691 729 ntAPPRIS P1 TSL 1 (best) BASIC2.73□□□□□ -1.97
VCX3AQ9NNX9 MTATP6P25-201ENST00000574491 261 ntBASIC2.73□□□□□ -1.97
VCX3AQ9NNX9 MIR4446-201ENST00000578505 67 ntBASIC2.73□□□□□ -1.97
VCX3AQ9NNX9 ZNF415P1-201ENST00000582279 1166 ntBASIC2.73□□□□□ -1.97
VCX3AQ9NNX9 LINC01900-202ENST00000584898 603 ntTSL 5 BASIC2.73□□□□□ -1.97
VCX3AQ9NNX9 AL160237.3-201ENST00000604114 1013 ntBASIC2.73□□□□□ -1.97
VCX3AQ9NNX9 HNRNPDLP4-201ENST00000605144 301 ntBASIC2.73□□□□□ -1.97
VCX3AQ9NNX9 LINC00343-210ENST00000608220 806 ntTSL 5 BASIC2.73□□□□□ -1.97
VCX3AQ9NNX9 MIR6076-201ENST00000617521 113 ntBASIC2.73□□□□□ -1.97
VCX3AQ9NNX9 AP003122.6-201ENST00000623831 495 ntBASIC2.73□□□□□ -1.97
VCX3AQ9NNX9 AC132825.7-201ENST00000638744 335 ntBASIC2.73□□□□□ -1.97
VCX3AQ9NNX9 GPBP1-201ENST00000264779 1786 ntAPPRIS ALT2 TSL 1 (best) BASIC2.73□□□□□ -1.97
VCX3AQ9NNX9 CUL1P1-201ENST00000509510 2425 ntBASIC2.72□□□□□ -1.97
VCX3AQ9NNX9 ZNF626-204ENST00000612591 4404 ntAPPRIS P1 TSL 5 BASIC2.72□□□□□ -1.97
VCX3AQ9NNX9 NAALADL2-203ENST00000454872 9865 ntAPPRIS P1 TSL 1 (best) BASIC2.72□□□□□ -1.97
VCX3AQ9NNX9 SPINT4-201ENST00000279058 512 ntAPPRIS P1 TSL 1 (best) BASIC2.72□□□□□ -1.97
VCX3AQ9NNX9 TTTY13-201ENST00000330337 659 ntTSL 1 (best) BASIC2.72□□□□□ -1.97
VCX3AQ9NNX9 NACA3P-201ENST00000359690 648 ntBASIC2.72□□□□□ -1.97
VCX3AQ9NNX9 RNU4-35P-201ENST00000362588 141 ntBASIC2.72□□□□□ -1.97
VCX3AQ9NNX9 PLG-203ENST00000366924 1166 ntTSL 1 (best) BASIC2.72□□□□□ -1.97
VCX3AQ9NNX9 C1orf194-202ENST00000369945 534 ntTSL 5 BASIC2.72□□□□□ -1.97
VCX3AQ9NNX9 MLLT3-201ENST00000380321 708 ntTSL 3 BASIC2.72□□□□□ -1.97
VCX3AQ9NNX9 MIR493-201ENST00000385254 89 ntBASIC2.72□□□□□ -1.97
VCX3AQ9NNX9 RPS4XP3-201ENST00000398541 413 ntBASIC2.72□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 96.7 ms