Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 SNORA40.2-201ENST00000390847 128 ntBASIC3.69□□□□□ -1.82
VMP1Q96GC9 RPS4XP3-201ENST00000398541 413 ntBASIC3.69□□□□□ -1.82
VMP1Q96GC9 SSXP9-201ENST00000417503 292 ntBASIC3.69□□□□□ -1.82
VMP1Q96GC9 TMEM167AP1-201ENST00000423409 219 ntBASIC3.69□□□□□ -1.82
VMP1Q96GC9 RPL27AP8-201ENST00000424277 446 ntBASIC3.69□□□□□ -1.82
VMP1Q96GC9 TBCAP1-201ENST00000436520 327 ntBASIC3.69□□□□□ -1.82
VMP1Q96GC9 LINC01423-202ENST00000436845 423 ntTSL 2 BASIC3.69□□□□□ -1.82
VMP1Q96GC9 NRG3-AS1-201ENST00000448936 555 ntTSL 2 BASIC3.69□□□□□ -1.82
VMP1Q96GC9 AC091179.1-201ENST00000461606 579 ntBASIC3.69□□□□□ -1.82
VMP1Q96GC9 AC104982.1-201ENST00000478775 574 ntBASIC3.69□□□□□ -1.82
VMP1Q96GC9 RPL30P14-201ENST00000482744 348 ntBASIC3.69□□□□□ -1.82
VMP1Q96GC9 AC108210.1-201ENST00000510772 825 ntTSL 3 BASIC3.69□□□□□ -1.82
VMP1Q96GC9 AC026402.1-201ENST00000513642 170 ntBASIC3.69□□□□□ -1.82
VMP1Q96GC9 SNORA70.16-201ENST00000516390 95 ntBASIC3.69□□□□□ -1.82
VMP1Q96GC9 AP001207.2-201ENST00000519490 539 ntBASIC3.69□□□□□ -1.82
VMP1Q96GC9 AC022509.2-201ENST00000540392 699 ntTSL 3 BASIC3.69□□□□□ -1.82
VMP1Q96GC9 AP000777.1-201ENST00000541495 355 ntTSL 3 BASIC3.69□□□□□ -1.82
VMP1Q96GC9 UTS2-201ENST00000054668 420 ntAPPRIS P4 TSL 1 (best) BASIC3.69□□□□□ -1.82
VMP1Q96GC9 AL032819.1-201ENST00000568554 379 ntTSL 3 BASIC3.69□□□□□ -1.82
VMP1Q96GC9 OR4K8P-201ENST00000578842 1048 ntBASIC3.69□□□□□ -1.82
VMP1Q96GC9 AC093227.2-201ENST00000589357 285 ntBASIC3.69□□□□□ -1.82
VMP1Q96GC9 AC021517.1-203ENST00000590257 421 ntTSL 3 BASIC3.69□□□□□ -1.82
VMP1Q96GC9 AC007001.1-201ENST00000590912 670 ntTSL 5 BASIC3.69□□□□□ -1.82
VMP1Q96GC9 BNIP3P11-201ENST00000603878 563 ntBASIC3.69□□□□□ -1.82
VMP1Q96GC9 AC091167.4-201ENST00000605079 184 ntBASIC3.69□□□□□ -1.82
VMP1Q96GC9 AL008729.1-201ENST00000606627 553 ntTSL 4 BASIC3.69□□□□□ -1.82
VMP1Q96GC9 LINC00343-210ENST00000608220 806 ntTSL 5 BASIC3.69□□□□□ -1.82
VMP1Q96GC9 AL138960.2-201ENST00000625145 535 ntBASIC3.69□□□□□ -1.82
VMP1Q96GC9 NRDE2-210ENST00000628832 132 ntTSL 5 BASIC3.69□□□□□ -1.82
VMP1Q96GC9 CEP85L-202ENST00000368488 7118 ntTSL 5 BASIC3.69□□□□□ -1.82
VMP1Q96GC9 D21S2088E-201ENST00000262354 1725 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
VMP1Q96GC9 AL356473.1-201ENST00000406203 1408 ntBASIC3.69□□□□□ -1.82
VMP1Q96GC9 TRMT10A-203ENST00000394877 3516 ntAPPRIS P1 TSL 2 BASIC3.69□□□□□ -1.82
VMP1Q96GC9 PPHLN1-208ENST00000449194 1583 ntAPPRIS ALT1 TSL 1 (best) BASIC3.68□□□□□ -1.82
VMP1Q96GC9 FAM35CP-201ENST00000554755 2470 ntBASIC3.68□□□□□ -1.82
VMP1Q96GC9 AC092435.3-201ENST00000565538 3654 ntBASIC3.68□□□□□ -1.82
VMP1Q96GC9 FIGNL1-201ENST00000356889 3471 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
VMP1Q96GC9 OR2AP1-201ENST00000321688 930 ntAPPRIS P1 BASIC3.68□□□□□ -1.82
VMP1Q96GC9 RNA5SP399-201ENST00000364003 117 ntBASIC3.68□□□□□ -1.82
VMP1Q96GC9 RN7SKP280-201ENST00000364196 304 ntBASIC3.68□□□□□ -1.82
VMP1Q96GC9 SNORA1.3-201ENST00000384676 136 ntBASIC3.68□□□□□ -1.82
VMP1Q96GC9 LGALS16-201ENST00000392051 624 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
VMP1Q96GC9 AL445189.1-201ENST00000405722 338 ntBASIC3.68□□□□□ -1.82
VMP1Q96GC9 RNU2-43P-201ENST00000410306 190 ntBASIC3.68□□□□□ -1.82
VMP1Q96GC9 RNA5SP38-201ENST00000410750 119 ntBASIC3.68□□□□□ -1.82
VMP1Q96GC9 AL449283.1-202ENST00000418249 604 ntBASIC3.68□□□□□ -1.82
VMP1Q96GC9 AC002075.2-201ENST00000425207 252 ntBASIC3.68□□□□□ -1.82
VMP1Q96GC9 AC093581.1-202ENST00000430890 391 ntTSL 2 BASIC3.68□□□□□ -1.82
VMP1Q96GC9 AL445259.1-202ENST00000434768 379 ntTSL 3 BASIC3.68□□□□□ -1.82
VMP1Q96GC9 AC024082.2-201ENST00000434771 238 ntBASIC3.68□□□□□ -1.82
VMP1Q96GC9 AC018742.1-201ENST00000435237 488 ntTSL 3 BASIC3.68□□□□□ -1.82
VMP1Q96GC9 LINC01359-202ENST00000436350 710 ntTSL 3 BASIC3.68□□□□□ -1.82
VMP1Q96GC9 MTND4P6-201ENST00000438297 472 ntBASIC3.68□□□□□ -1.82
VMP1Q96GC9 ACBD3-AS1-201ENST00000440540 535 ntTSL 5 BASIC3.68□□□□□ -1.82
VMP1Q96GC9 TRIM60P18-201ENST00000441518 828 ntBASIC3.68□□□□□ -1.82
VMP1Q96GC9 AL590664.1-201ENST00000448065 339 ntBASIC3.68□□□□□ -1.82
VMP1Q96GC9 RPL21P11-201ENST00000461458 483 ntBASIC3.68□□□□□ -1.82
VMP1Q96GC9 PTP4A2-203ENST00000470404 575 ntTSL 3 BASIC3.68□□□□□ -1.82
VMP1Q96GC9 RPS3AP6-201ENST00000484430 795 ntBASIC3.68□□□□□ -1.82
VMP1Q96GC9 AC108860.1-201ENST00000484521 383 ntBASIC3.68□□□□□ -1.82
VMP1Q96GC9 AC068724.1-201ENST00000487100 792 ntBASIC3.68□□□□□ -1.82
VMP1Q96GC9 RPS4XP15-201ENST00000489210 795 ntBASIC3.68□□□□□ -1.82
VMP1Q96GC9 AC114912.1-201ENST00000503394 546 ntTSL 3 BASIC3.68□□□□□ -1.82
VMP1Q96GC9 AC108062.1-201ENST00000505133 637 ntTSL 3 BASIC3.68□□□□□ -1.82
VMP1Q96GC9 LEF1-218ENST00000512172 598 ntTSL 2 BASIC3.68□□□□□ -1.82
VMP1Q96GC9 AC026726.1-201ENST00000512859 601 ntBASIC3.68□□□□□ -1.82
VMP1Q96GC9 AC010255.3-204ENST00000514637 454 ntTSL 2 BASIC3.68□□□□□ -1.82
VMP1Q96GC9 AP003472.1-201ENST00000519844 644 ntTSL 3 BASIC3.68□□□□□ -1.82
VMP1Q96GC9 PTS-202ENST00000524931 696 ntTSL 3 BASIC3.68□□□□□ -1.82
VMP1Q96GC9 AC073655.2-202ENST00000547927 401 ntTSL 3 BASIC3.68□□□□□ -1.82
VMP1Q96GC9 AC079598.1-201ENST00000548691 554 ntTSL 4 BASIC3.68□□□□□ -1.82
VMP1Q96GC9 YWHAZP1-201ENST00000556286 722 ntBASIC3.68□□□□□ -1.82
VMP1Q96GC9 LINC02562-201ENST00000561705 785 ntTSL 2 BASIC3.68□□□□□ -1.82
VMP1Q96GC9 AC009101.2-201ENST00000564293 456 ntTSL 3 BASIC3.68□□□□□ -1.82
VMP1Q96GC9 AC018767.1-201ENST00000566236 405 ntTSL 3 BASIC3.68□□□□□ -1.82
VMP1Q96GC9 AC087463.4-202ENST00000566676 579 ntTSL 3 BASIC3.68□□□□□ -1.82
VMP1Q96GC9 MTND3P13-201ENST00000574391 343 ntBASIC3.68□□□□□ -1.82
VMP1Q96GC9 AC099489.2-201ENST00000574976 260 ntBASIC3.68□□□□□ -1.82
VMP1Q96GC9 RN7SL339P-201ENST00000580597 296 ntBASIC3.68□□□□□ -1.82
VMP1Q96GC9 AC004853.1-201ENST00000604902 698 ntBASIC3.68□□□□□ -1.82
VMP1Q96GC9 AC097717.1-250ENST00000608498 273 ntTSL 5 BASIC3.68□□□□□ -1.82
VMP1Q96GC9 AC090912.3-201ENST00000609775 533 ntBASIC3.68□□□□□ -1.82
VMP1Q96GC9 AL158163.2-201ENST00000619110 700 ntBASIC3.68□□□□□ -1.82
VMP1Q96GC9 CCT7-217ENST00000626868 249 ntTSL 5 BASIC3.68□□□□□ -1.82
VMP1Q96GC9 DOCK7-201ENST00000251157 7084 ntAPPRIS ALT2 TSL 5 BASIC3.68□□□□□ -1.82
VMP1Q96GC9 RAD17-202ENST00000305138 3164 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
VMP1Q96GC9 GLCE-202ENST00000559420 4840 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
VMP1Q96GC9 IDE-202ENST00000371581 4480 ntTSL 2 BASIC3.68□□□□□ -1.82
VMP1Q96GC9 MTUS1-228ENST00000544260 3650 ntTSL 2 BASIC3.68□□□□□ -1.82
VMP1Q96GC9 ISPD-AS1-202ENST00000438573 2252 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
VMP1Q96GC9 CCSER2-201ENST00000224756 7664 ntAPPRIS P1 TSL 5 BASIC3.68□□□□□ -1.82
VMP1Q96GC9 PSMA5-201ENST00000271308 3729 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
VMP1Q96GC9 ZNF883-201ENST00000619044 2051 ntAPPRIS P1 TSL 5 BASIC3.67□□□□□ -1.82
VMP1Q96GC9 USP9Y-201ENST00000338981 10036 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
VMP1Q96GC9 DDX60L-207ENST00000505890 4568 ntTSL 2 BASIC3.67□□□□□ -1.82
VMP1Q96GC9 STATH-201ENST00000246895 598 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
VMP1Q96GC9 AC092941.1-201ENST00000415940 427 ntTSL 5 BASIC3.67□□□□□ -1.82
VMP1Q96GC9 AL355989.1-202ENST00000419406 408 ntTSL 3 BASIC3.67□□□□□ -1.82
VMP1Q96GC9 Z97055.1-201ENST00000419730 712 ntBASIC3.67□□□□□ -1.82
VMP1Q96GC9 MTCO2P5-201ENST00000422621 426 ntBASIC3.67□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 82.4 ms