Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 LINC01625-201ENST00000454788 1690 ntTSL 2 BASIC3.36□□□□□ -1.87
ZNF540Q8NDQ6 AC009975.2-201ENST00000635306 1429 ntTSL 5 BASIC3.36□□□□□ -1.87
ZNF540Q8NDQ6 PHF3-202ENST00000393387 6947 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
ZNF540Q8NDQ6 TAB3P1-202ENST00000452645 1634 ntBASIC3.35□□□□□ -1.87
ZNF540Q8NDQ6 ACEA_U3.1-201ENST00000363057 217 ntBASIC3.35□□□□□ -1.87
ZNF540Q8NDQ6 CGA-201ENST00000369582 729 ntTSL 5 BASIC3.35□□□□□ -1.87
ZNF540Q8NDQ6 AP002088.1-201ENST00000382740 395 ntBASIC3.35□□□□□ -1.87
ZNF540Q8NDQ6 RNU6-207P-201ENST00000384137 107 ntBASIC3.35□□□□□ -1.87
ZNF540Q8NDQ6 TRAV7-201ENST00000390429 337 ntAPPRIS P1 BASIC3.35□□□□□ -1.87
ZNF540Q8NDQ6 TRAV39-201ENST00000390466 331 ntAPPRIS P1 BASIC3.35□□□□□ -1.87
ZNF540Q8NDQ6 MIR1290-201ENST00000408735 78 ntBASIC3.35□□□□□ -1.87
ZNF540Q8NDQ6 LINC01402-201ENST00000422226 279 ntTSL 3 BASIC3.35□□□□□ -1.87
ZNF540Q8NDQ6 AL139247.1-201ENST00000422768 325 ntBASIC3.35□□□□□ -1.87
ZNF540Q8NDQ6 AL590783.1-201ENST00000424138 456 ntTSL 2 BASIC3.35□□□□□ -1.87
ZNF540Q8NDQ6 AC092598.1-201ENST00000431708 797 ntTSL 3 BASIC3.35□□□□□ -1.87
ZNF540Q8NDQ6 AL583835.2-201ENST00000435483 500 ntTSL 2 BASIC3.35□□□□□ -1.87
ZNF540Q8NDQ6 RPL23AP74-201ENST00000437246 471 ntBASIC3.35□□□□□ -1.87
ZNF540Q8NDQ6 LINC00972-202ENST00000438065 788 ntTSL 3 BASIC3.35□□□□□ -1.87
ZNF540Q8NDQ6 RPS3AP46-201ENST00000448352 682 ntBASIC3.35□□□□□ -1.87
ZNF540Q8NDQ6 AC099794.1-201ENST00000450811 447 ntTSL 3 BASIC3.35□□□□□ -1.87
ZNF540Q8NDQ6 AC092958.2-201ENST00000476987 492 ntTSL 3 BASIC3.35□□□□□ -1.87
ZNF540Q8NDQ6 RN7SL323P-201ENST00000494712 295 ntBASIC3.35□□□□□ -1.87
ZNF540Q8NDQ6 PANCR-202ENST00000513690 448 ntTSL 2 BASIC3.35□□□□□ -1.87
ZNF540Q8NDQ6 AC023632.1-201ENST00000518463 375 ntBASIC3.35□□□□□ -1.87
ZNF540Q8NDQ6 AP000462.1-201ENST00000535704 818 ntTSL 3 BASIC3.35□□□□□ -1.87
ZNF540Q8NDQ6 AC068643.2-201ENST00000547418 852 ntTSL 5 BASIC3.35□□□□□ -1.87
ZNF540Q8NDQ6 AL132780.1-202ENST00000548322 591 ntTSL 4 BASIC3.35□□□□□ -1.87
ZNF540Q8NDQ6 AC090502.2-201ENST00000549267 280 ntBASIC3.35□□□□□ -1.87
ZNF540Q8NDQ6 BNIP3P24-201ENST00000593398 557 ntBASIC3.35□□□□□ -1.87
ZNF540Q8NDQ6 AC008739.1-201ENST00000598137 575 ntTSL 2 BASIC3.35□□□□□ -1.87
ZNF540Q8NDQ6 AC092364.1-201ENST00000598561 471 ntTSL 3 BASIC3.35□□□□□ -1.87
ZNF540Q8NDQ6 AL022099.1-201ENST00000604551 712 ntBASIC3.35□□□□□ -1.87
ZNF540Q8NDQ6 AL008729.1-201ENST00000606627 553 ntTSL 4 BASIC3.35□□□□□ -1.87
ZNF540Q8NDQ6 AC004832.5-201ENST00000608677 401 ntBASIC3.35□□□□□ -1.87
ZNF540Q8NDQ6 AC005344.1-201ENST00000613391 459 ntBASIC3.35□□□□□ -1.87
ZNF540Q8NDQ6 AL512506.1-201ENST00000613918 449 ntBASIC3.35□□□□□ -1.87
ZNF540Q8NDQ6 MAGI2-AS3-224ENST00000619135 205 ntTSL 5 BASIC3.35□□□□□ -1.87
ZNF540Q8NDQ6 FOXP2-206ENST00000393491 6085 ntTSL 5 BASIC3.35□□□□□ -1.87
ZNF540Q8NDQ6 ATF2-221ENST00000538946 1325 ntTSL 5 BASIC3.35□□□□□ -1.87
ZNF540Q8NDQ6 MUC7-203ENST00000456088 2479 ntAPPRIS P2 TSL 4 BASIC3.35□□□□□ -1.87
ZNF540Q8NDQ6 SLC39A10-202ENST00000409086 5432 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
ZNF540Q8NDQ6 OR4G11P-202ENST00000642116 1414 ntBASIC3.35□□□□□ -1.87
ZNF540Q8NDQ6 LINC01416-201ENST00000563553 2310 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
ZNF540Q8NDQ6 ERBIN-201ENST00000284037 8647 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
ZNF540Q8NDQ6 ZBTB20-201ENST00000357258 27125 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
ZNF540Q8NDQ6 AC093010.3-201ENST00000570269 15214 ntBASIC3.34□□□□□ -1.87
ZNF540Q8NDQ6 SYNE1-212ENST00000423061 27436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.34□□□□□ -1.87
ZNF540Q8NDQ6 AC087359.1-201ENST00000508335 1740 ntBASIC3.34□□□□□ -1.87
ZNF540Q8NDQ6 MIR30E-201ENST00000362104 92 ntBASIC3.34□□□□□ -1.87
ZNF540Q8NDQ6 RNA5SP42-201ENST00000364278 115 ntBASIC3.34□□□□□ -1.87
ZNF540Q8NDQ6 SUGT1P1-201ENST00000379514 476 ntBASIC3.34□□□□□ -1.87
ZNF540Q8NDQ6 MIR7-3-201ENST00000384898 110 ntBASIC3.34□□□□□ -1.87
ZNF540Q8NDQ6 RNU6-1176P-201ENST00000390955 107 ntBASIC3.34□□□□□ -1.87
ZNF540Q8NDQ6 RAC1P8-201ENST00000427086 527 ntBASIC3.34□□□□□ -1.87
ZNF540Q8NDQ6 BX679664.1-201ENST00000434429 253 ntBASIC3.34□□□□□ -1.87
ZNF540Q8NDQ6 LINC00113-203ENST00000442550 572 ntTSL 3 BASIC3.34□□□□□ -1.87
ZNF540Q8NDQ6 AC018643.1-201ENST00000445459 414 ntTSL 5 BASIC3.34□□□□□ -1.87
ZNF540Q8NDQ6 DYNLL1P6-201ENST00000503440 264 ntBASIC3.34□□□□□ -1.87
ZNF540Q8NDQ6 AC097521.1-201ENST00000505488 567 ntTSL 3 BASIC3.34□□□□□ -1.87
ZNF540Q8NDQ6 LINC02272-202ENST00000511399 607 ntTSL 2 BASIC3.34□□□□□ -1.87
ZNF540Q8NDQ6 PKIA-203ENST00000518467 588 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
ZNF540Q8NDQ6 CHCHD7-209ENST00000519367 442 ntTSL 3 BASIC3.34□□□□□ -1.87
ZNF540Q8NDQ6 AP001636.2-201ENST00000525517 696 ntBASIC3.34□□□□□ -1.87
ZNF540Q8NDQ6 PIGY-201ENST00000527353 217 ntAPPRIS P1 BASIC3.34□□□□□ -1.87
ZNF540Q8NDQ6 AC118942.1-202ENST00000529081 578 ntTSL 5 BASIC3.34□□□□□ -1.87
ZNF540Q8NDQ6 KLRC2-204ENST00000536833 771 ntTSL 5 BASIC3.34□□□□□ -1.87
ZNF540Q8NDQ6 MRPL51-207ENST00000543959 472 ntTSL 3 BASIC3.34□□□□□ -1.87
ZNF540Q8NDQ6 SETP7-201ENST00000552169 453 ntBASIC3.34□□□□□ -1.87
ZNF540Q8NDQ6 EGLN3-AS1-201ENST00000555922 308 ntTSL 3 BASIC3.34□□□□□ -1.87
ZNF540Q8NDQ6 LINC00519-201ENST00000557518 682 ntTSL 2 BASIC3.34□□□□□ -1.87
ZNF540Q8NDQ6 ZNF971P-201ENST00000562068 1249 ntBASIC3.34□□□□□ -1.87
ZNF540Q8NDQ6 AC005774.1-201ENST00000565247 567 ntTSL 4 BASIC3.34□□□□□ -1.87
ZNF540Q8NDQ6 AC011260.1-201ENST00000578420 472 ntBASIC3.34□□□□□ -1.87
ZNF540Q8NDQ6 MIR4444-1-201ENST00000581696 74 ntBASIC3.34□□□□□ -1.87
ZNF540Q8NDQ6 MIR4444-2-201ENST00000584390 74 ntBASIC3.34□□□□□ -1.87
ZNF540Q8NDQ6 AL031176.1-201ENST00000604554 466 ntBASIC3.34□□□□□ -1.87
ZNF540Q8NDQ6 SNORA62.6-201ENST00000606322 83 ntBASIC3.34□□□□□ -1.87
ZNF540Q8NDQ6 AC068631.1-219ENST00000625826 668 ntTSL 5 BASIC3.34□□□□□ -1.87
ZNF540Q8NDQ6 RPS4Y2-201ENST00000629237 792 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
ZNF540Q8NDQ6 AL513302.2-201ENST00000562313 1842 ntBASIC3.34□□□□□ -1.87
ZNF540Q8NDQ6 RNF17-201ENST00000255324 5119 ntAPPRIS P1 TSL 2 BASIC3.34□□□□□ -1.87
ZNF540Q8NDQ6 AP003122.5-201ENST00000527668 3766 ntBASIC3.34□□□□□ -1.88
ZNF540Q8NDQ6 MANEA-201ENST00000358812 4575 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.88
ZNF540Q8NDQ6 OR52E2-201ENST00000321522 978 ntAPPRIS P1 BASIC3.33□□□□□ -1.88
ZNF540Q8NDQ6 RNU1-75P-201ENST00000347264 129 ntBASIC3.33□□□□□ -1.88
ZNF540Q8NDQ6 RNU6-882P-201ENST00000391025 103 ntBASIC3.33□□□□□ -1.88
ZNF540Q8NDQ6 SOD2P1-201ENST00000396543 562 ntBASIC3.33□□□□□ -1.88
ZNF540Q8NDQ6 FBXO11-201ENST00000402508 3844 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
ZNF540Q8NDQ6 RN7SKP156-201ENST00000410308 342 ntBASIC3.33□□□□□ -1.88
ZNF540Q8NDQ6 RNU2-72P-201ENST00000411175 163 ntBASIC3.33□□□□□ -1.88
ZNF540Q8NDQ6 ZDHHC20P2-201ENST00000424108 429 ntBASIC3.33□□□□□ -1.88
ZNF540Q8NDQ6 AL512637.2-201ENST00000431287 1256 ntBASIC3.33□□□□□ -1.88
ZNF540Q8NDQ6 LINC01208-202ENST00000434969 827 ntTSL 2 BASIC3.33□□□□□ -1.88
ZNF540Q8NDQ6 ZNF736P1Y-201ENST00000440402 1276 ntBASIC3.33□□□□□ -1.88
ZNF540Q8NDQ6 AL096829.2-201ENST00000446582 742 ntBASIC3.33□□□□□ -1.88
ZNF540Q8NDQ6 AL358232.1-201ENST00000448030 501 ntBASIC3.33□□□□□ -1.88
ZNF540Q8NDQ6 AL513422.1-201ENST00000449531 383 ntTSL 2 BASIC3.33□□□□□ -1.88
ZNF540Q8NDQ6 AL391704.1-202ENST00000453889 874 ntTSL 3 BASIC3.33□□□□□ -1.88
ZNF540Q8NDQ6 AC092798.1-201ENST00000458542 409 ntBASIC3.33□□□□□ -1.88
ZNF540Q8NDQ6 RN7SL442P-201ENST00000473804 320 ntBASIC3.33□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 163.4 ms