Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 PRUNE2-201ENST00000223609 2697 ntTSL 2 BASIC4.32□□□□□ -1.72
CLRN3Q8NCR9 SMAD5-212ENST00000545620 6937 ntAPPRIS P1 TSL 5 BASIC4.32□□□□□ -1.72
CLRN3Q8NCR9 CNTRL-201ENST00000238341 7431 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
CLRN3Q8NCR9 AL136537.2-201ENST00000562049 2471 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
CLRN3Q8NCR9 AC009643.2-201ENST00000603543 1448 ntBASIC4.32□□□□□ -1.72
CLRN3Q8NCR9 BIRC3-206ENST00000532808 4238 ntAPPRIS P1 TSL 5 BASIC4.32□□□□□ -1.72
CLRN3Q8NCR9 AGBL4-201ENST00000334103 881 ntTSL 5 BASIC4.32□□□□□ -1.72
CLRN3Q8NCR9 RNU6-797P-201ENST00000363101 109 ntBASIC4.32□□□□□ -1.72
CLRN3Q8NCR9 AC117402.1-202ENST00000383686 820 ntTSL 2 BASIC4.32□□□□□ -1.72
CLRN3Q8NCR9 RNU6-190P-201ENST00000384154 102 ntBASIC4.32□□□□□ -1.72
CLRN3Q8NCR9 MIR551B-201ENST00000384984 96 ntBASIC4.32□□□□□ -1.72
CLRN3Q8NCR9 RNU6-817P-201ENST00000391083 104 ntBASIC4.32□□□□□ -1.72
CLRN3Q8NCR9 AL353133.1-201ENST00000407695 401 ntBASIC4.32□□□□□ -1.72
CLRN3Q8NCR9 AL078645.1-201ENST00000414377 423 ntTSL 3 BASIC4.32□□□□□ -1.72
CLRN3Q8NCR9 LHFPL3-AS1-203ENST00000417290 950 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
CLRN3Q8NCR9 AC233728.1-201ENST00000418049 218 ntTSL 5 BASIC4.32□□□□□ -1.72
CLRN3Q8NCR9 LINC02542-201ENST00000418567 822 ntTSL 5 BASIC4.32□□□□□ -1.72
CLRN3Q8NCR9 ARL5AP1-201ENST00000418991 388 ntBASIC4.32□□□□□ -1.72
CLRN3Q8NCR9 EIF4EP1-201ENST00000422311 642 ntBASIC4.32□□□□□ -1.72
CLRN3Q8NCR9 TRBV29OR9-2-201ENST00000427589 333 ntBASIC4.32□□□□□ -1.72
CLRN3Q8NCR9 AL158212.1-201ENST00000428766 315 ntTSL 5 BASIC4.32□□□□□ -1.72
CLRN3Q8NCR9 HMGB1P27-201ENST00000431429 603 ntBASIC4.32□□□□□ -1.72
CLRN3Q8NCR9 AC069285.2-201ENST00000440210 275 ntBASIC4.32□□□□□ -1.72
CLRN3Q8NCR9 AC048351.1-202ENST00000449483 735 ntTSL 3 BASIC4.32□□□□□ -1.72
CLRN3Q8NCR9 AL118520.1-201ENST00000450770 291 ntBASIC4.32□□□□□ -1.72
CLRN3Q8NCR9 LINC00571-203ENST00000454060 525 ntTSL 3 BASIC4.32□□□□□ -1.72
CLRN3Q8NCR9 RNU6-953P-201ENST00000459154 107 ntBASIC4.32□□□□□ -1.72
CLRN3Q8NCR9 AC010469.1-201ENST00000463864 576 ntBASIC4.32□□□□□ -1.72
CLRN3Q8NCR9 CREM-230ENST00000474931 626 ntTSL 2 BASIC4.32□□□□□ -1.72
CLRN3Q8NCR9 TRBV1-201ENST00000476502 284 ntBASIC4.32□□□□□ -1.72
CLRN3Q8NCR9 RN7SL70P-201ENST00000478322 302 ntBASIC4.32□□□□□ -1.72
CLRN3Q8NCR9 HMGN1P12-201ENST00000499125 195 ntBASIC4.32□□□□□ -1.72
CLRN3Q8NCR9 AC009567.2-201ENST00000502989 349 ntBASIC4.32□□□□□ -1.72
CLRN3Q8NCR9 AC010350.1-201ENST00000504908 231 ntBASIC4.32□□□□□ -1.72
CLRN3Q8NCR9 AC018645.1-201ENST00000505003 109 ntBASIC4.32□□□□□ -1.72
CLRN3Q8NCR9 AC021151.1-201ENST00000506933 183 ntTSL 3 BASIC4.32□□□□□ -1.72
CLRN3Q8NCR9 LINC02512-201ENST00000509548 429 ntTSL 5 BASIC4.32□□□□□ -1.72
CLRN3Q8NCR9 AC098591.2-201ENST00000510152 315 ntBASIC4.32□□□□□ -1.72
CLRN3Q8NCR9 MTND6P2-201ENST00000512226 524 ntBASIC4.32□□□□□ -1.72
CLRN3Q8NCR9 SUMO2P20-201ENST00000520803 283 ntBASIC4.32□□□□□ -1.72
CLRN3Q8NCR9 AC021698.1-201ENST00000524858 716 ntTSL 3 BASIC4.32□□□□□ -1.72
CLRN3Q8NCR9 AC134775.1-201ENST00000531268 464 ntTSL 2 BASIC4.32□□□□□ -1.72
CLRN3Q8NCR9 KIRREL3-AS2-201ENST00000532988 492 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
CLRN3Q8NCR9 LINC00944-201ENST00000536517 421 ntTSL 2 BASIC4.32□□□□□ -1.72
CLRN3Q8NCR9 ADI1P3-201ENST00000549509 470 ntBASIC4.32□□□□□ -1.72
CLRN3Q8NCR9 AC012038.2-201ENST00000553006 256 ntTSL 3 BASIC4.32□□□□□ -1.72
CLRN3Q8NCR9 FKBP1BP1-201ENST00000553366 325 ntBASIC4.32□□□□□ -1.72
CLRN3Q8NCR9 AC005519.1-201ENST00000554490 601 ntBASIC4.32□□□□□ -1.72
CLRN3Q8NCR9 AC023510.1-201ENST00000555862 490 ntTSL 2 BASIC4.32□□□□□ -1.72
CLRN3Q8NCR9 AC022196.1-202ENST00000559570 462 ntTSL 3 BASIC4.32□□□□□ -1.72
CLRN3Q8NCR9 AC055855.3-201ENST00000564269 578 ntTSL 2 BASIC4.32□□□□□ -1.72
CLRN3Q8NCR9 MIR3921-201ENST00000577308 85 ntBASIC4.32□□□□□ -1.72
CLRN3Q8NCR9 AC090283.1-201ENST00000582101 265 ntTSL 3 BASIC4.32□□□□□ -1.72
CLRN3Q8NCR9 AC012409.4-201ENST00000612923 249 ntBASIC4.32□□□□□ -1.72
CLRN3Q8NCR9 AL023881.1-201ENST00000621088 301 ntBASIC4.32□□□□□ -1.72
CLRN3Q8NCR9 AC068213.1-201ENST00000625124 226 ntBASIC4.32□□□□□ -1.72
CLRN3Q8NCR9 DLG1-210ENST00000422288 2854 ntTSL 5 BASIC4.32□□□□□ -1.72
CLRN3Q8NCR9 NFIB-210ENST00000543693 7622 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
CLRN3Q8NCR9 RLIM-201ENST00000332687 8317 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
CLRN3Q8NCR9 CASC19-201ENST00000500112 5735 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
CLRN3Q8NCR9 ZNF681-201ENST00000402377 6497 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
CLRN3Q8NCR9 ZNF705E-201ENST00000525199 3442 ntAPPRIS P1 TSL 2 BASIC4.32□□□□□ -1.72
CLRN3Q8NCR9 PRG4-203ENST00000367485 4765 ntAPPRIS ALT2 TSL 5 BASIC4.32□□□□□ -1.72
CLRN3Q8NCR9 OBSCN-204ENST00000366707 26772 ntAPPRIS P1 TSL 5 BASIC4.32□□□□□ -1.72
CLRN3Q8NCR9 UGT2A3-201ENST00000251566 2965 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
CLRN3Q8NCR9 ANKRD20A10P-201ENST00000457591 1515 ntBASIC4.31□□□□□ -1.72
CLRN3Q8NCR9 SLC26A7-209ENST00000617078 5094 ntTSL 5 BASIC4.31□□□□□ -1.72
CLRN3Q8NCR9 MYBPC1-204ENST00000452455 3861 ntAPPRIS ALT2 TSL 2 BASIC4.31□□□□□ -1.72
CLRN3Q8NCR9 SMAD4-202ENST00000398417 8495 ntAPPRIS P1 TSL 5 BASIC4.31□□□□□ -1.72
CLRN3Q8NCR9 SAMSN1-206ENST00000619120 2028 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
CLRN3Q8NCR9 DMTF1-204ENST00000413276 3548 ntTSL 5 BASIC4.31□□□□□ -1.72
CLRN3Q8NCR9 CUL2-206ENST00000421317 2376 ntTSL 2 BASIC4.31□□□□□ -1.72
CLRN3Q8NCR9 TMEM255A-202ENST00000371352 2879 ntTSL 2 BASIC4.31□□□□□ -1.72
CLRN3Q8NCR9 AC116096.1-201ENST00000566804 2314 ntBASIC4.31□□□□□ -1.72
CLRN3Q8NCR9 OR4N2-201ENST00000315947 924 ntAPPRIS P1 BASIC4.31□□□□□ -1.72
CLRN3Q8NCR9 FAM183A-201ENST00000335282 488 ntAPPRIS P1 TSL 2 BASIC4.31□□□□□ -1.72
CLRN3Q8NCR9 PLET1-201ENST00000338832 1215 ntAPPRIS P1 TSL 5 BASIC4.31□□□□□ -1.72
CLRN3Q8NCR9 RNA5SP346-201ENST00000363541 121 ntBASIC4.31□□□□□ -1.72
CLRN3Q8NCR9 SNORA51.2-201ENST00000364595 132 ntBASIC4.31□□□□□ -1.72
CLRN3Q8NCR9 RNA5SP132-201ENST00000364725 118 ntBASIC4.31□□□□□ -1.72
CLRN3Q8NCR9 AC092634.1-201ENST00000366505 199 ntBASIC4.31□□□□□ -1.72
CLRN3Q8NCR9 MIR607-201ENST00000385241 96 ntBASIC4.31□□□□□ -1.72
CLRN3Q8NCR9 OPRPN-201ENST00000399575 1040 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
CLRN3Q8NCR9 RNU6ATAC16P-201ENST00000408591 138 ntBASIC4.31□□□□□ -1.72
CLRN3Q8NCR9 MIR1290-201ENST00000408735 78 ntBASIC4.31□□□□□ -1.72
CLRN3Q8NCR9 FAM183A-205ENST00000410048 500 ntTSL 3 BASIC4.31□□□□□ -1.72
CLRN3Q8NCR9 AC018630.2-202ENST00000422992 927 ntBASIC4.31□□□□□ -1.72
CLRN3Q8NCR9 AL500522.1-201ENST00000423667 318 ntTSL 3 BASIC4.31□□□□□ -1.72
CLRN3Q8NCR9 ERLEC1P1-201ENST00000433806 578 ntBASIC4.31□□□□□ -1.72
CLRN3Q8NCR9 TRAPPC2P3-201ENST00000443200 321 ntBASIC4.31□□□□□ -1.72
CLRN3Q8NCR9 AC003991.1-205ENST00000447758 625 ntTSL 5 BASIC4.31□□□□□ -1.72
CLRN3Q8NCR9 MTND3P16-201ENST00000452205 344 ntBASIC4.31□□□□□ -1.72
CLRN3Q8NCR9 LINC01755-201ENST00000455010 453 ntTSL 2 BASIC4.31□□□□□ -1.72
CLRN3Q8NCR9 RPS23P2-201ENST00000463671 415 ntBASIC4.31□□□□□ -1.72
CLRN3Q8NCR9 RPL21P8-201ENST00000465083 535 ntBASIC4.31□□□□□ -1.72
CLRN3Q8NCR9 RN7SL83P-201ENST00000468131 297 ntBASIC4.31□□□□□ -1.72
CLRN3Q8NCR9 RN7SL790P-201ENST00000474043 298 ntBASIC4.31□□□□□ -1.72
CLRN3Q8NCR9 RN7SL655P-201ENST00000486087 298 ntBASIC4.31□□□□□ -1.72
CLRN3Q8NCR9 RN7SL214P-201ENST00000487317 265 ntBASIC4.31□□□□□ -1.72
CLRN3Q8NCR9 AC091951.2-201ENST00000500762 203 ntBASIC4.31□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 101.4 ms