Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 MIR1305-201ENST00000408300 86 ntBASIC5.66□□□□□ -1.5
USHBP1Q8N6Y0 RN7SKP202-201ENST00000410439 330 ntBASIC5.66□□□□□ -1.5
USHBP1Q8N6Y0 AL589642.2-201ENST00000413291 839 ntTSL 3 BASIC5.66□□□□□ -1.5
USHBP1Q8N6Y0 RPL7P2-201ENST00000427639 268 ntBASIC5.66□□□□□ -1.5
USHBP1Q8N6Y0 ISCA1P6-201ENST00000427740 390 ntBASIC5.66□□□□□ -1.5
USHBP1Q8N6Y0 AC073069.1-201ENST00000428657 441 ntBASIC5.66□□□□□ -1.5
USHBP1Q8N6Y0 AC022022.1-201ENST00000430304 178 ntBASIC5.66□□□□□ -1.5
USHBP1Q8N6Y0 Z82190.1-201ENST00000454534 490 ntBASIC5.66□□□□□ -1.5
USHBP1Q8N6Y0 LINC01150-201ENST00000455671 315 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
USHBP1Q8N6Y0 PCCA-AS1-203ENST00000455958 356 ntTSL 3 BASIC5.66□□□□□ -1.5
USHBP1Q8N6Y0 RPL23AP2-201ENST00000471227 466 ntBASIC5.66□□□□□ -1.5
USHBP1Q8N6Y0 LEKR1-206ENST00000483177 546 ntTSL 3 BASIC5.66□□□□□ -1.5
USHBP1Q8N6Y0 CSN1S1-202ENST00000505782 871 ntAPPRIS ALT2 TSL 5 BASIC5.66□□□□□ -1.5
USHBP1Q8N6Y0 CSN1S1-204ENST00000507772 895 ntAPPRIS ALT2 TSL 5 BASIC5.66□□□□□ -1.5
USHBP1Q8N6Y0 CTD-2350J17.1-202ENST00000510456 360 ntTSL 2 BASIC5.66□□□□□ -1.5
USHBP1Q8N6Y0 RNU2-46P-201ENST00000517038 113 ntBASIC5.66□□□□□ -1.5
USHBP1Q8N6Y0 AC022390.1-201ENST00000517854 434 ntTSL 3 BASIC5.66□□□□□ -1.5
USHBP1Q8N6Y0 MS4A13-204ENST00000527948 790 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
USHBP1Q8N6Y0 AP003034.1-201ENST00000534621 422 ntBASIC5.66□□□□□ -1.5
USHBP1Q8N6Y0 AC009803.2-201ENST00000550378 665 ntTSL 5 BASIC5.66□□□□□ -1.5
USHBP1Q8N6Y0 AC125611.2-201ENST00000551907 647 ntBASIC5.66□□□□□ -1.5
USHBP1Q8N6Y0 AC128707.1-201ENST00000552230 494 ntTSL 3 BASIC5.66□□□□□ -1.5
USHBP1Q8N6Y0 AL133279.2-201ENST00000556546 428 ntTSL 3 BASIC5.66□□□□□ -1.5
USHBP1Q8N6Y0 TTN-AS1-212ENST00000582847 1036 ntTSL 5 BASIC5.66□□□□□ -1.5
USHBP1Q8N6Y0 AC012507.3-201ENST00000603556 477 ntBASIC5.66□□□□□ -1.5
USHBP1Q8N6Y0 AC245014.2-201ENST00000603689 287 ntBASIC5.66□□□□□ -1.5
USHBP1Q8N6Y0 AC246785.4-201ENST00000605374 287 ntBASIC5.66□□□□□ -1.5
USHBP1Q8N6Y0 AC008966.2-201ENST00000606157 453 ntBASIC5.66□□□□□ -1.5
USHBP1Q8N6Y0 AC112250.2-201ENST00000609450 491 ntTSL 3 BASIC5.66□□□□□ -1.5
USHBP1Q8N6Y0 VIPR1-AS1-223ENST00000627073 451 ntTSL 5 BASIC5.66□□□□□ -1.5
USHBP1Q8N6Y0 AC112487.2-201ENST00000637950 304 ntBASIC5.66□□□□□ -1.5
USHBP1Q8N6Y0 OR11H4-203ENST00000641525 1082 ntAPPRIS P1 BASIC5.66□□□□□ -1.5
USHBP1Q8N6Y0 LINC01902-202ENST00000636983 4607 ntTSL 5 BASIC5.66□□□□□ -1.5
USHBP1Q8N6Y0 CENPE-202ENST00000380026 8241 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
USHBP1Q8N6Y0 MTUS1-201ENST00000262102 6160 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
USHBP1Q8N6Y0 C6-201ENST00000263413 3661 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
USHBP1Q8N6Y0 OBSCN-210ENST00000570156 26925 ntAPPRIS P1 TSL 5 BASIC5.66□□□□□ -1.5
USHBP1Q8N6Y0 SPAM1-203ENST00000402183 1860 ntAPPRIS P4 TSL 5 BASIC5.66□□□□□ -1.5
USHBP1Q8N6Y0 HPGDS-201ENST00000295256 1636 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
USHBP1Q8N6Y0 CACNB4-273ENST00000638091 4061 ntTSL 5 BASIC5.66□□□□□ -1.5
USHBP1Q8N6Y0 DMXL2-203ENST00000543779 10400 ntAPPRIS ALT2 TSL 1 (best) BASIC5.66□□□□□ -1.5
USHBP1Q8N6Y0 AL133243.3-201ENST00000617415 3004 ntBASIC5.66□□□□□ -1.5
USHBP1Q8N6Y0 TM4SF18-201ENST00000296059 3852 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
USHBP1Q8N6Y0 AL590399.5-201ENST00000428709 3325 ntTSL 2 BASIC5.66□□□□□ -1.5
USHBP1Q8N6Y0 RMST-202ENST00000541282 2099 ntTSL 2 BASIC5.65□□□□□ -1.5
USHBP1Q8N6Y0 FAM135A-210ENST00000505868 5173 ntTSL 5 BASIC5.65□□□□□ -1.5
USHBP1Q8N6Y0 LPAR4-205ENST00000614823 2155 ntAPPRIS P1 TSL 4 BASIC5.65□□□□□ -1.5
USHBP1Q8N6Y0 CASC19-284ENST00000642142 1868 ntBASIC5.65□□□□□ -1.5
USHBP1Q8N6Y0 RNU1-20P-201ENST00000363314 162 ntBASIC5.65□□□□□ -1.5
USHBP1Q8N6Y0 RNU6-692P-201ENST00000384496 107 ntBASIC5.65□□□□□ -1.5
USHBP1Q8N6Y0 Y_RNA.529-201ENST00000384586 119 ntBASIC5.65□□□□□ -1.5
USHBP1Q8N6Y0 MIR670-201ENST00000390142 98 ntBASIC5.65□□□□□ -1.5
USHBP1Q8N6Y0 SNORD115.1-201ENST00000391109 76 ntBASIC5.65□□□□□ -1.5
USHBP1Q8N6Y0 SPA17P1-201ENST00000416656 452 ntBASIC5.65□□□□□ -1.5
USHBP1Q8N6Y0 HMGB3P20-201ENST00000417997 600 ntBASIC5.65□□□□□ -1.5
USHBP1Q8N6Y0 AC013402.2-201ENST00000424257 437 ntTSL 3 BASIC5.65□□□□□ -1.5
USHBP1Q8N6Y0 SNRPEP7-201ENST00000438350 220 ntBASIC5.65□□□□□ -1.5
USHBP1Q8N6Y0 CALM1P1-201ENST00000442082 433 ntBASIC5.65□□□□□ -1.5
USHBP1Q8N6Y0 AL049552.1-201ENST00000444302 577 ntTSL 2 BASIC5.65□□□□□ -1.5
USHBP1Q8N6Y0 NUTM2A-AS1-209ENST00000447424 571 ntTSL 3 BASIC5.65□□□□□ -1.5
USHBP1Q8N6Y0 AC079448.1-201ENST00000449377 373 ntBASIC5.65□□□□□ -1.5
USHBP1Q8N6Y0 C1DP4-201ENST00000455429 424 ntBASIC5.65□□□□□ -1.5
USHBP1Q8N6Y0 ENSA-211ENST00000503345 793 ntTSL 3 BASIC5.65□□□□□ -1.5
USHBP1Q8N6Y0 SEMA6A-AS2-201ENST00000508766 482 ntTSL 3 BASIC5.65□□□□□ -1.5
USHBP1Q8N6Y0 Y_RNA.675-201ENST00000516389 149 ntBASIC5.65□□□□□ -1.5
USHBP1Q8N6Y0 AC008562.1-201ENST00000521763 330 ntBASIC5.65□□□□□ -1.5
USHBP1Q8N6Y0 AP001992.1-204ENST00000525104 687 ntTSL 3 BASIC5.65□□□□□ -1.5
USHBP1Q8N6Y0 FOPNL-204ENST00000573396 735 ntTSL 3 BASIC5.65□□□□□ -1.5
USHBP1Q8N6Y0 AC092364.1-201ENST00000598561 471 ntTSL 3 BASIC5.65□□□□□ -1.5
USHBP1Q8N6Y0 AC011503.1-202ENST00000598914 919 ntTSL 2 BASIC5.65□□□□□ -1.5
USHBP1Q8N6Y0 AL359999.1-201ENST00000604513 294 ntBASIC5.65□□□□□ -1.5
USHBP1Q8N6Y0 CDRT1-208ENST00000630868 794 ntBASIC5.65□□□□□ -1.5
USHBP1Q8N6Y0 AC025125.1-201ENST00000624743 1922 ntBASIC5.65□□□□□ -1.51
USHBP1Q8N6Y0 AC010127.1-209ENST00000447809 2305 ntTSL 1 (best) BASIC5.65□□□□□ -1.51
USHBP1Q8N6Y0 ASAH2-204ENST00000447815 2311 ntTSL 1 (best) BASIC5.65□□□□□ -1.51
USHBP1Q8N6Y0 OR10K1-203ENST00000641432 3775 ntAPPRIS P1 BASIC5.65□□□□□ -1.51
USHBP1Q8N6Y0 KRR1-201ENST00000229214 10118 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.51
USHBP1Q8N6Y0 SLC10A2-201ENST00000245312 3779 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
USHBP1Q8N6Y0 NFIB-211ENST00000606230 2311 ntTSL 5 BASIC5.64□□□□□ -1.51
USHBP1Q8N6Y0 ZNF382-204ENST00000439428 2742 ntAPPRIS ALT2 TSL 1 (best) BASIC5.64□□□□□ -1.51
USHBP1Q8N6Y0 AP000542.2-201ENST00000623199 6179 ntBASIC5.64□□□□□ -1.51
USHBP1Q8N6Y0 MARCH1-202ENST00000339875 2476 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
USHBP1Q8N6Y0 MDM2-207ENST00000360430 891 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
USHBP1Q8N6Y0 Y_RNA.142-201ENST00000363491 102 ntBASIC5.64□□□□□ -1.51
USHBP1Q8N6Y0 NFIB-202ENST00000380924 840 ntTSL 5 BASIC5.64□□□□□ -1.51
USHBP1Q8N6Y0 Y_RNA.481-201ENST00000384373 102 ntBASIC5.64□□□□□ -1.51
USHBP1Q8N6Y0 Y_RNA.548-201ENST00000384656 105 ntBASIC5.64□□□□□ -1.51
USHBP1Q8N6Y0 MIR554-201ENST00000384874 96 ntBASIC5.64□□□□□ -1.51
USHBP1Q8N6Y0 SNRPEP2-201ENST00000397592 279 ntBASIC5.64□□□□□ -1.51
USHBP1Q8N6Y0 STON1-GTF2A1L-204ENST00000405008 3821 ntAPPRIS P1 TSL 5 BASIC5.64□□□□□ -1.51
USHBP1Q8N6Y0 FAT1P1-201ENST00000406588 507 ntBASIC5.64□□□□□ -1.51
USHBP1Q8N6Y0 AL136322.1-201ENST00000422250 548 ntTSL 4 BASIC5.64□□□□□ -1.51
USHBP1Q8N6Y0 LINC01208-202ENST00000434969 827 ntTSL 2 BASIC5.64□□□□□ -1.51
USHBP1Q8N6Y0 AP000936.3-201ENST00000438127 255 ntBASIC5.64□□□□□ -1.51
USHBP1Q8N6Y0 SNRPGP6-201ENST00000451124 220 ntBASIC5.64□□□□□ -1.51
USHBP1Q8N6Y0 IQCG-204ENST00000453254 1230 ntTSL 2 BASIC5.64□□□□□ -1.51
USHBP1Q8N6Y0 OR6K1P-201ENST00000456766 971 ntBASIC5.64□□□□□ -1.51
USHBP1Q8N6Y0 AC022364.2-201ENST00000457963 554 ntBASIC5.64□□□□□ -1.51
USHBP1Q8N6Y0 MTND1P3-201ENST00000484956 952 ntBASIC5.64□□□□□ -1.51
USHBP1Q8N6Y0 AC146944.2-203ENST00000502493 354 ntBASIC5.64□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 98.5 ms