Protein–RNA interactions for Protein: Q70EL4

USP43, Ubiquitin carboxyl-terminal hydrolase 43, humanhuman

Predictions only

Length 1,123 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP43Q70EL4 TMEM106C-220ENST00000552561 810 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
USP43Q70EL4 AC009142.1-202ENST00000562565 563 ntTSL 2 BASIC3.83□□□□□ -1.8
USP43Q70EL4 AC009063.1-201ENST00000563342 702 ntBASIC3.83□□□□□ -1.8
USP43Q70EL4 AC084783.1-201ENST00000565846 910 ntBASIC3.83□□□□□ -1.8
USP43Q70EL4 AC074237.1-201ENST00000577674 471 ntTSL 3 BASIC3.83□□□□□ -1.8
USP43Q70EL4 MIR3671-201ENST00000580455 88 ntBASIC3.83□□□□□ -1.8
USP43Q70EL4 AC022432.1-201ENST00000595739 310 ntBASIC3.83□□□□□ -1.8
USP43Q70EL4 BNIP3P4-201ENST00000604946 565 ntBASIC3.83□□□□□ -1.8
USP43Q70EL4 AC090970.3-201ENST00000612566 866 ntBASIC3.83□□□□□ -1.8
USP43Q70EL4 HOTAIRM1_5.1-201ENST00000619311 145 ntBASIC3.83□□□□□ -1.8
USP43Q70EL4 AC007342.8-201ENST00000623278 678 ntBASIC3.83□□□□□ -1.8
USP43Q70EL4 OR51G1-201ENST00000623849 966 ntAPPRIS P1 BASIC3.83□□□□□ -1.8
USP43Q70EL4 LINC01090-203ENST00000632331 466 ntTSL 5 BASIC3.83□□□□□ -1.8
USP43Q70EL4 AC245088.3-201ENST00000634383 424 ntAPPRIS P1 BASIC3.83□□□□□ -1.8
USP43Q70EL4 RUVBL2-213ENST00000639391 120 ntTSL 5 BASIC3.83□□□□□ -1.8
USP43Q70EL4 AC072062.1-210ENST00000628464 1315 ntTSL 5 BASIC3.83□□□□□ -1.8
USP43Q70EL4 CPNE8-202ENST00000360449 1757 ntAPPRIS ALT2 TSL 2 BASIC3.83□□□□□ -1.8
USP43Q70EL4 CENPI-202ENST00000372927 3262 ntAPPRIS P3 TSL 5 BASIC3.83□□□□□ -1.8
USP43Q70EL4 DGKH-201ENST00000261491 17261 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
USP43Q70EL4 MUC19-205ENST00000454784 24775 ntTSL 5 BASIC3.82□□□□□ -1.8
USP43Q70EL4 ZNF137P-201ENST00000456718 1920 ntBASIC3.82□□□□□ -1.8
USP43Q70EL4 CCT8P1-201ENST00000413611 1657 ntBASIC3.82□□□□□ -1.8
USP43Q70EL4 ELF2P3-201ENST00000445099 1506 ntBASIC3.82□□□□□ -1.8
USP43Q70EL4 MTCO1P6-201ENST00000481192 1384 ntBASIC3.82□□□□□ -1.8
USP43Q70EL4 MUCL1-201ENST00000308796 470 ntAPPRIS P2 TSL 1 (best) BASIC3.82□□□□□ -1.8
USP43Q70EL4 SNORA57.1-201ENST00000391227 145 ntBASIC3.82□□□□□ -1.8
USP43Q70EL4 AC009411.1-202ENST00000412424 548 ntTSL 4 BASIC3.82□□□□□ -1.8
USP43Q70EL4 LINC01312-201ENST00000412745 775 ntTSL 3 BASIC3.82□□□□□ -1.8
USP43Q70EL4 AC079150.1-201ENST00000413043 383 ntTSL 3 BASIC3.82□□□□□ -1.8
USP43Q70EL4 AL732292.1-201ENST00000426692 226 ntBASIC3.82□□□□□ -1.8
USP43Q70EL4 AP001324.1-201ENST00000428553 399 ntBASIC3.82□□□□□ -1.8
USP43Q70EL4 MTCO1P54-201ENST00000430139 712 ntBASIC3.82□□□□□ -1.8
USP43Q70EL4 CXorf51B-201ENST00000438525 436 ntAPPRIS P1 TSL 2 BASIC3.82□□□□□ -1.8
USP43Q70EL4 LINC02195-201ENST00000443373 294 ntTSL 3 BASIC3.82□□□□□ -1.8
USP43Q70EL4 RPS26P30-201ENST00000443431 335 ntBASIC3.82□□□□□ -1.8
USP43Q70EL4 ARL5AP2-201ENST00000444698 533 ntBASIC3.82□□□□□ -1.8
USP43Q70EL4 GPC6-AS2-201ENST00000445540 587 ntTSL 5 BASIC3.82□□□□□ -1.8
USP43Q70EL4 AL357514.1-201ENST00000446322 488 ntTSL 3 BASIC3.82□□□□□ -1.8
USP43Q70EL4 AC239367.2-201ENST00000447309 705 ntBASIC3.82□□□□□ -1.8
USP43Q70EL4 NANOGNBP1-201ENST00000448444 480 ntBASIC3.82□□□□□ -1.8
USP43Q70EL4 AL353148.1-201ENST00000449761 463 ntTSL 2 BASIC3.82□□□□□ -1.8
USP43Q70EL4 ANP32BP2-201ENST00000454525 545 ntBASIC3.82□□□□□ -1.8
USP43Q70EL4 RPS27AP17-201ENST00000463344 455 ntBASIC3.82□□□□□ -1.8
USP43Q70EL4 AC010618.1-201ENST00000469924 477 ntBASIC3.82□□□□□ -1.8
USP43Q70EL4 AC116337.2-201ENST00000477662 156 ntBASIC3.82□□□□□ -1.8
USP43Q70EL4 GAPDHP39-201ENST00000481866 979 ntBASIC3.82□□□□□ -1.8
USP43Q70EL4 ACTG1P13-201ENST00000486987 1043 ntBASIC3.82□□□□□ -1.8
USP43Q70EL4 RPL7P47-201ENST00000497299 556 ntBASIC3.82□□□□□ -1.8
USP43Q70EL4 AC008628.2-201ENST00000502605 298 ntBASIC3.82□□□□□ -1.8
USP43Q70EL4 LINC02118-201ENST00000505899 407 ntTSL 3 BASIC3.82□□□□□ -1.8
USP43Q70EL4 AC107463.1-203ENST00000509713 284 ntTSL 5 BASIC3.82□□□□□ -1.8
USP43Q70EL4 RNU6-506P-201ENST00000516553 94 ntBASIC3.82□□□□□ -1.8
USP43Q70EL4 IGKV2-38-201ENST00000517443 247 ntBASIC3.82□□□□□ -1.8
USP43Q70EL4 TPT1-AS1-216ENST00000522845 403 ntTSL 3 BASIC3.82□□□□□ -1.8
USP43Q70EL4 CENPUP1-201ENST00000526649 1202 ntBASIC3.82□□□□□ -1.8
USP43Q70EL4 AC074029.1-201ENST00000552531 1044 ntBASIC3.82□□□□□ -1.8
USP43Q70EL4 AL392023.2-202ENST00000555342 494 ntTSL 5 BASIC3.82□□□□□ -1.8
USP43Q70EL4 ZNF519P2-201ENST00000557032 169 ntBASIC3.82□□□□□ -1.8
USP43Q70EL4 NR2F2-AS1-208ENST00000560395 441 ntTSL 5 BASIC3.82□□□□□ -1.8
USP43Q70EL4 EIF5A2P1-201ENST00000564027 460 ntBASIC3.82□□□□□ -1.8
USP43Q70EL4 AC073878.2-201ENST00000565449 385 ntTSL 3 BASIC3.82□□□□□ -1.8
USP43Q70EL4 MIR1254-2-201ENST00000579553 63 ntBASIC3.82□□□□□ -1.8
USP43Q70EL4 EIF1P6-201ENST00000600054 334 ntBASIC3.82□□□□□ -1.8
USP43Q70EL4 AC015871.2-201ENST00000603605 948 ntBASIC3.82□□□□□ -1.8
USP43Q70EL4 AC016747.2-202ENST00000607743 332 ntTSL 5 BASIC3.82□□□□□ -1.8
USP43Q70EL4 AC011944.2-201ENST00000624440 683 ntBASIC3.82□□□□□ -1.8
USP43Q70EL4 AC006065.6-201ENST00000625201 545 ntBASIC3.82□□□□□ -1.8
USP43Q70EL4 SEC23A-215ENST00000625395 261 ntTSL 5 BASIC3.82□□□□□ -1.8
USP43Q70EL4 ORMDL1-201ENST00000325795 2692 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
USP43Q70EL4 ORC4-201ENST00000264169 6598 ntAPPRIS P1 TSL 5 BASIC3.82□□□□□ -1.8
USP43Q70EL4 SGIP1-206ENST00000435165 3646 ntAPPRIS ALT2 TSL 2 BASIC3.82□□□□□ -1.8
USP43Q70EL4 MGAT4A-203ENST00000409391 2018 ntAPPRIS P1 TSL 5 BASIC3.82□□□□□ -1.8
USP43Q70EL4 AC006026.1-201ENST00000444025 1803 ntBASIC3.81□□□□□ -1.8
USP43Q70EL4 C12orf60-201ENST00000330828 1684 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
USP43Q70EL4 OR1C1-202ENST00000641256 3719 ntAPPRIS P1 BASIC3.81□□□□□ -1.8
USP43Q70EL4 ZNF616-201ENST00000330123 2563 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
USP43Q70EL4 TLR6-205ENST00000610323 1443 ntTSL 5 BASIC3.81□□□□□ -1.8
USP43Q70EL4 OR5AK2-201ENST00000326855 996 ntAPPRIS P1 BASIC3.81□□□□□ -1.8
USP43Q70EL4 ZBTB8OSP1-201ENST00000342688 498 ntBASIC3.81□□□□□ -1.8
USP43Q70EL4 IL1RAPL2-201ENST00000344799 1290 ntTSL 5 BASIC3.81□□□□□ -1.8
USP43Q70EL4 Y_RNA.126-201ENST00000363382 111 ntBASIC3.81□□□□□ -1.8
USP43Q70EL4 RNU6-666P-201ENST00000363499 107 ntBASIC3.81□□□□□ -1.8
USP43Q70EL4 RNA5SP509-201ENST00000364577 119 ntBASIC3.81□□□□□ -1.8
USP43Q70EL4 RNU6-259P-201ENST00000383999 107 ntBASIC3.81□□□□□ -1.8
USP43Q70EL4 RNU6ATAC5P-201ENST00000388104 126 ntBASIC3.81□□□□□ -1.8
USP43Q70EL4 MIR320B1-201ENST00000390209 79 ntBASIC3.81□□□□□ -1.8
USP43Q70EL4 SNORD65.1-201ENST00000390889 71 ntBASIC3.81□□□□□ -1.8
USP43Q70EL4 SNORD115-47-201ENST00000391226 86 ntBASIC3.81□□□□□ -1.8
USP43Q70EL4 GUCA1C-202ENST00000393963 900 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
USP43Q70EL4 RPL17P50-201ENST00000396131 546 ntBASIC3.81□□□□□ -1.8
USP43Q70EL4 AL139098.1-201ENST00000407291 389 ntBASIC3.81□□□□□ -1.8
USP43Q70EL4 AL589642.2-201ENST00000413291 839 ntTSL 3 BASIC3.81□□□□□ -1.8
USP43Q70EL4 FNDC1-IT1-201ENST00000419703 516 ntTSL 3 BASIC3.81□□□□□ -1.8
USP43Q70EL4 MYCBP2-AS2-201ENST00000428716 428 ntTSL 5 BASIC3.81□□□□□ -1.8
USP43Q70EL4 AL451070.1-201ENST00000430143 439 ntTSL 5 BASIC3.81□□□□□ -1.8
USP43Q70EL4 AL590302.1-201ENST00000431017 359 ntTSL 2 BASIC3.81□□□□□ -1.8
USP43Q70EL4 AC010132.1-201ENST00000433315 561 ntTSL 4 BASIC3.81□□□□□ -1.8
USP43Q70EL4 ENOX1-AS2-201ENST00000434273 609 ntTSL 3 BASIC3.81□□□□□ -1.8
USP43Q70EL4 AL360089.1-201ENST00000442260 436 ntTSL 5 BASIC3.81□□□□□ -1.8
USP43Q70EL4 RPL23AP43-201ENST00000446445 471 ntBASIC3.81□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 89.2 ms