Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 AP001207.3-201ENST00000520268 491 ntTSL 3 BASIC4.79□□□□□ -1.64
VPS53Q5VIR6 AC239860.2-201ENST00000525886 270 ntBASIC4.79□□□□□ -1.64
VPS53Q5VIR6 C14orf105-204ENST00000526336 598 ntTSL 4 BASIC4.79□□□□□ -1.64
VPS53Q5VIR6 AC113192.1-201ENST00000527270 321 ntTSL 3 BASIC4.79□□□□□ -1.64
VPS53Q5VIR6 OR8L1P-201ENST00000534005 955 ntBASIC4.79□□□□□ -1.64
VPS53Q5VIR6 YPEL5P3-201ENST00000547227 352 ntBASIC4.79□□□□□ -1.64
VPS53Q5VIR6 AC073525.1-202ENST00000550049 732 ntTSL 3 BASIC4.79□□□□□ -1.64
VPS53Q5VIR6 GNRHR2P1-201ENST00000555315 631 ntBASIC4.79□□□□□ -1.64
VPS53Q5VIR6 TIMM9-208ENST00000556007 746 ntTSL 3 BASIC4.79□□□□□ -1.64
VPS53Q5VIR6 AL162872.1-201ENST00000557709 448 ntTSL 3 BASIC4.79□□□□□ -1.64
VPS53Q5VIR6 ANKRD36BP2-206ENST00000575193 1245 ntBASIC4.79□□□□□ -1.64
VPS53Q5VIR6 MIR3160-1-201ENST00000577972 85 ntBASIC4.79□□□□□ -1.64
VPS53Q5VIR6 LINC02079-201ENST00000582518 294 ntTSL 2 BASIC4.79□□□□□ -1.64
VPS53Q5VIR6 AC068790.5-201ENST00000602741 355 ntBASIC4.79□□□□□ -1.64
VPS53Q5VIR6 AC239868.4-201ENST00000608318 671 ntBASIC4.79□□□□□ -1.64
VPS53Q5VIR6 AC026368.1-201ENST00000614934 690 ntBASIC4.79□□□□□ -1.64
VPS53Q5VIR6 NMD3P1-201ENST00000439704 1488 ntBASIC4.79□□□□□ -1.64
VPS53Q5VIR6 YWHAZ-201ENST00000353245 2829 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
VPS53Q5VIR6 SKP1-209ENST00000522552 1683 ntAPPRIS ALT1 TSL 1 (best) BASIC4.79□□□□□ -1.64
VPS53Q5VIR6 AL391684.1-201ENST00000416191 2998 ntTSL 5 BASIC4.79□□□□□ -1.64
VPS53Q5VIR6 PPP1R9A-208ENST00000456331 10090 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
VPS53Q5VIR6 FKTN-201ENST00000223528 7364 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
VPS53Q5VIR6 LINC01247-201ENST00000448901 4209 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
VPS53Q5VIR6 DPPA3-201ENST00000345088 1079 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
VPS53Q5VIR6 SNORA75-201ENST00000384158 137 ntBASIC4.78□□□□□ -1.64
VPS53Q5VIR6 RNU6-517P-201ENST00000384362 110 ntBASIC4.78□□□□□ -1.64
VPS53Q5VIR6 RNU6-1122P-201ENST00000384449 107 ntBASIC4.78□□□□□ -1.64
VPS53Q5VIR6 MFAP5-202ENST00000396549 1195 ntTSL 2 BASIC4.78□□□□□ -1.64
VPS53Q5VIR6 MEIG1-202ENST00000407572 625 ntAPPRIS P1 TSL 2 BASIC4.78□□□□□ -1.64
VPS53Q5VIR6 RPS7P13-201ENST00000413955 498 ntBASIC4.78□□□□□ -1.64
VPS53Q5VIR6 RAD23BP2-201ENST00000416003 1207 ntBASIC4.78□□□□□ -1.64
VPS53Q5VIR6 AC092647.1-201ENST00000420654 287 ntBASIC4.78□□□□□ -1.64
VPS53Q5VIR6 AC009237.2-201ENST00000421358 284 ntBASIC4.78□□□□□ -1.64
VPS53Q5VIR6 AC093843.1-201ENST00000424395 512 ntTSL 2 BASIC4.78□□□□□ -1.64
VPS53Q5VIR6 OR51AB1P-201ENST00000429046 620 ntBASIC4.78□□□□□ -1.64
VPS53Q5VIR6 AC002465.1-201ENST00000436097 349 ntTSL 2 BASIC4.78□□□□□ -1.64
VPS53Q5VIR6 LARP1BP3-201ENST00000437229 869 ntBASIC4.78□□□□□ -1.64
VPS53Q5VIR6 AL451129.1-201ENST00000437471 285 ntTSL 3 BASIC4.78□□□□□ -1.64
VPS53Q5VIR6 BMI1P1-201ENST00000445879 941 ntBASIC4.78□□□□□ -1.64
VPS53Q5VIR6 RPL29P29-201ENST00000448725 423 ntBASIC4.78□□□□□ -1.64
VPS53Q5VIR6 AL356859.1-201ENST00000449180 414 ntTSL 5 BASIC4.78□□□□□ -1.64
VPS53Q5VIR6 AC011897.1-201ENST00000450715 346 ntTSL 3 BASIC4.78□□□□□ -1.64
VPS53Q5VIR6 NDUFA5P7-201ENST00000452914 242 ntBASIC4.78□□□□□ -1.64
VPS53Q5VIR6 FGF7P3-201ENST00000454645 303 ntBASIC4.78□□□□□ -1.64
VPS53Q5VIR6 NDUFAF4P4-201ENST00000454883 502 ntBASIC4.78□□□□□ -1.64
VPS53Q5VIR6 AC011825.1-201ENST00000484967 388 ntBASIC4.78□□□□□ -1.64
VPS53Q5VIR6 AC005726.1-201ENST00000494679 427 ntBASIC4.78□□□□□ -1.64
VPS53Q5VIR6 RNF138P1-201ENST00000502765 546 ntBASIC4.78□□□□□ -1.64
VPS53Q5VIR6 AC090673.1-204ENST00000504038 977 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
VPS53Q5VIR6 AC108210.1-201ENST00000510772 825 ntTSL 3 BASIC4.78□□□□□ -1.64
VPS53Q5VIR6 GTF2H2C-212ENST00000512736 832 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
VPS53Q5VIR6 AC011377.1-201ENST00000517708 275 ntTSL 3 BASIC4.78□□□□□ -1.64
VPS53Q5VIR6 ARL2BPP5-201ENST00000523141 481 ntBASIC4.78□□□□□ -1.64
VPS53Q5VIR6 AC087276.1-201ENST00000529659 480 ntBASIC4.78□□□□□ -1.64
VPS53Q5VIR6 AC091053.2-201ENST00000534169 537 ntTSL 4 BASIC4.78□□□□□ -1.64
VPS53Q5VIR6 TOMM20P2-201ENST00000540082 421 ntBASIC4.78□□□□□ -1.64
VPS53Q5VIR6 AC093025.1-201ENST00000547795 569 ntTSL 2 BASIC4.78□□□□□ -1.64
VPS53Q5VIR6 AC012170.2-201ENST00000560380 667 ntTSL 3 BASIC4.78□□□□□ -1.64
VPS53Q5VIR6 AC012378.1-201ENST00000561155 364 ntTSL 3 BASIC4.78□□□□□ -1.64
VPS53Q5VIR6 AL035425.2-201ENST00000563887 563 ntAPPRIS P1 TSL 4 BASIC4.78□□□□□ -1.64
VPS53Q5VIR6 PCMTD1P2-201ENST00000565017 355 ntBASIC4.78□□□□□ -1.64
VPS53Q5VIR6 AC073878.2-201ENST00000565449 385 ntTSL 3 BASIC4.78□□□□□ -1.64
VPS53Q5VIR6 AC064805.2-201ENST00000582959 523 ntTSL 4 BASIC4.78□□□□□ -1.64
VPS53Q5VIR6 AC007566.2-201ENST00000603642 413 ntBASIC4.78□□□□□ -1.64
VPS53Q5VIR6 AC097478.4-201ENST00000615968 522 ntTSL 5 BASIC4.78□□□□□ -1.64
VPS53Q5VIR6 ZNF117-203ENST00000610793 1374 ntTSL 2 BASIC4.78□□□□□ -1.64
VPS53Q5VIR6 PLCL2-202ENST00000432376 3940 ntAPPRIS P3 TSL 1 (best) BASIC4.78□□□□□ -1.65
VPS53Q5VIR6 STXBP4-204ENST00000434978 2807 ntTSL 1 (best) BASIC4.78□□□□□ -1.65
VPS53Q5VIR6 LGI1-210ENST00000629035 2251 ntTSL 5 BASIC4.77□□□□□ -1.65
VPS53Q5VIR6 OR6A2-202ENST00000641196 4295 ntAPPRIS P1 BASIC4.77□□□□□ -1.65
VPS53Q5VIR6 ANKRD20A10P-201ENST00000457591 1515 ntBASIC4.77□□□□□ -1.65
VPS53Q5VIR6 CR383658.2-201ENST00000547576 1525 ntBASIC4.77□□□□□ -1.65
VPS53Q5VIR6 AC093274.1-201ENST00000503488 5454 ntTSL 5 BASIC4.77□□□□□ -1.65
VPS53Q5VIR6 AC027514.1-201ENST00000588561 1603 ntBASIC4.77□□□□□ -1.65
VPS53Q5VIR6 SUCNR1-201ENST00000362032 4181 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
VPS53Q5VIR6 NPVF-201ENST00000222674 1190 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
VPS53Q5VIR6 RNU1-85P-201ENST00000364127 164 ntBASIC4.77□□□□□ -1.65
VPS53Q5VIR6 Y_RNA.359-201ENST00000365498 102 ntBASIC4.77□□□□□ -1.65
VPS53Q5VIR6 CUBN-201ENST00000377823 705 ntTSL 3 BASIC4.77□□□□□ -1.65
VPS53Q5VIR6 ESD-201ENST00000378697 1079 ntTSL 5 BASIC4.77□□□□□ -1.65
VPS53Q5VIR6 RNU6-441P-201ENST00000384545 106 ntBASIC4.77□□□□□ -1.65
VPS53Q5VIR6 SSXP10-201ENST00000402595 565 ntBASIC4.77□□□□□ -1.65
VPS53Q5VIR6 AL450338.1-201ENST00000407987 512 ntBASIC4.77□□□□□ -1.65
VPS53Q5VIR6 AC073264.1-201ENST00000411508 416 ntBASIC4.77□□□□□ -1.65
VPS53Q5VIR6 AL162254.1-202ENST00000419604 497 ntTSL 5 BASIC4.77□□□□□ -1.65
VPS53Q5VIR6 AC002454.1-204ENST00000419668 527 ntTSL 3 BASIC4.77□□□□□ -1.65
VPS53Q5VIR6 AC093698.1-201ENST00000423843 571 ntBASIC4.77□□□□□ -1.65
VPS53Q5VIR6 AC004160.1-205ENST00000428967 577 ntTSL 4 BASIC4.77□□□□□ -1.65
VPS53Q5VIR6 LINC00392-201ENST00000430033 557 ntTSL 3 BASIC4.77□□□□□ -1.65
VPS53Q5VIR6 AC010157.1-201ENST00000440589 527 ntTSL 4 BASIC4.77□□□□□ -1.65
VPS53Q5VIR6 AL121957.1-201ENST00000441532 338 ntTSL 2 BASIC4.77□□□□□ -1.65
VPS53Q5VIR6 RPL21P133-201ENST00000443666 476 ntBASIC4.77□□□□□ -1.65
VPS53Q5VIR6 RPL21P89-201ENST00000444021 467 ntBASIC4.77□□□□□ -1.65
VPS53Q5VIR6 HSFY6P-201ENST00000445573 403 ntBASIC4.77□□□□□ -1.65
VPS53Q5VIR6 NDUFS5P3-201ENST00000450668 321 ntBASIC4.77□□□□□ -1.65
VPS53Q5VIR6 FABP3P2-201ENST00000453169 399 ntBASIC4.77□□□□□ -1.65
VPS53Q5VIR6 ARPC3P2-201ENST00000457786 533 ntBASIC4.77□□□□□ -1.65
VPS53Q5VIR6 AC010460.1-201ENST00000507087 466 ntBASIC4.77□□□□□ -1.65
VPS53Q5VIR6 AC104663.1-201ENST00000508555 557 ntTSL 2 BASIC4.77□□□□□ -1.65
VPS53Q5VIR6 AC011352.1-201ENST00000512300 793 ntBASIC4.77□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 95 ms