Protein–RNA interactions for Protein: Q00056

HOXA4, Homeobox protein Hox-A4, humanhuman

Predicted RBP Predictions only

Length 320 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA4Q00056 UQCRBP1-201ENST00000421129 336 ntBASIC3.98□□□□□ -1.77
HOXA4Q00056 RPS27P18-201ENST00000431701 247 ntBASIC3.98□□□□□ -1.77
HOXA4Q00056 AL139824.1-201ENST00000431983 453 ntTSL 3 BASIC3.98□□□□□ -1.77
HOXA4Q00056 NRBF2P3-201ENST00000432731 865 ntBASIC3.98□□□□□ -1.77
HOXA4Q00056 AC004938.1-201ENST00000438468 308 ntBASIC3.98□□□□□ -1.77
HOXA4Q00056 BNIP3P2-201ENST00000441221 577 ntBASIC3.98□□□□□ -1.77
HOXA4Q00056 AL354794.1-201ENST00000442103 516 ntTSL 3 BASIC3.98□□□□□ -1.77
HOXA4Q00056 AL356421.2-201ENST00000446733 197 ntTSL 3 BASIC3.98□□□□□ -1.77
HOXA4Q00056 AL157882.1-201ENST00000447148 429 ntTSL 3 BASIC3.98□□□□□ -1.77
HOXA4Q00056 AL353691.1-201ENST00000451332 387 ntBASIC3.98□□□□□ -1.77
HOXA4Q00056 SPIN4-AS1-201ENST00000451979 426 ntTSL 2 BASIC3.98□□□□□ -1.77
HOXA4Q00056 CEACAMP6-201ENST00000452007 574 ntBASIC3.98□□□□□ -1.77
HOXA4Q00056 AC104308.1-201ENST00000454621 333 ntBASIC3.98□□□□□ -1.77
HOXA4Q00056 LINC01755-201ENST00000455010 453 ntTSL 2 BASIC3.98□□□□□ -1.77
HOXA4Q00056 AC010683.1-201ENST00000473673 378 ntBASIC3.98□□□□□ -1.77
HOXA4Q00056 MTCO2P30-201ENST00000503662 364 ntBASIC3.98□□□□□ -1.77
HOXA4Q00056 LRRC34P2-201ENST00000514850 553 ntBASIC3.98□□□□□ -1.77
HOXA4Q00056 RNU6-835P-201ENST00000516974 104 ntBASIC3.98□□□□□ -1.77
HOXA4Q00056 AC084116.3-201ENST00000519123 429 ntTSL 3 BASIC3.98□□□□□ -1.77
HOXA4Q00056 OR5D15P-201ENST00000531671 942 ntBASIC3.98□□□□□ -1.77
HOXA4Q00056 AC110275.1-201ENST00000534420 623 ntAPPRIS P1 TSL 4 BASIC3.98□□□□□ -1.77
HOXA4Q00056 AC123904.3-201ENST00000547218 814 ntBASIC3.98□□□□□ -1.77
HOXA4Q00056 BNIP3P1-201ENST00000547295 580 ntBASIC3.98□□□□□ -1.77
HOXA4Q00056 AC068789.1-201ENST00000547942 577 ntTSL 2 BASIC3.98□□□□□ -1.77
HOXA4Q00056 LSM3P2-201ENST00000551246 273 ntBASIC3.98□□□□□ -1.77
HOXA4Q00056 CBX3P5-201ENST00000552017 521 ntBASIC3.98□□□□□ -1.77
HOXA4Q00056 TRAV30-201ENST00000557168 337 ntAPPRIS P1 BASIC3.98□□□□□ -1.77
HOXA4Q00056 AP005059.2-201ENST00000577527 578 ntTSL 3 BASIC3.98□□□□□ -1.77
HOXA4Q00056 AC068112.1-201ENST00000580057 346 ntTSL 3 BASIC3.98□□□□□ -1.77
HOXA4Q00056 RPL26P30-202ENST00000602923 645 ntBASIC3.98□□□□□ -1.77
HOXA4Q00056 AC068790.3-201ENST00000602988 553 ntBASIC3.98□□□□□ -1.77
HOXA4Q00056 NRBF2P5-201ENST00000603087 788 ntBASIC3.98□□□□□ -1.77
HOXA4Q00056 AL512782.1-201ENST00000603093 364 ntBASIC3.98□□□□□ -1.77
HOXA4Q00056 AC004853.1-201ENST00000604902 698 ntBASIC3.98□□□□□ -1.77
HOXA4Q00056 RMST_3.1-201ENST00000611651 109 ntBASIC3.98□□□□□ -1.77
HOXA4Q00056 AC159540.2-206ENST00000619371 355 ntTSL 3 BASIC3.98□□□□□ -1.77
HOXA4Q00056 AC010338.1-201ENST00000621823 717 ntBASIC3.98□□□□□ -1.77
HOXA4Q00056 AC112204.3-201ENST00000623822 332 ntBASIC3.98□□□□□ -1.77
HOXA4Q00056 UGT2B4-207ENST00000639621 1154 ntTSL 5 BASIC3.98□□□□□ -1.77
HOXA4Q00056 AC099654.10-201ENST00000640395 161 ntBASIC3.98□□□□□ -1.77
HOXA4Q00056 CENPF-201ENST00000366955 10307 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
HOXA4Q00056 VBP1-204ENST00000625964 1547 ntTSL 5 BASIC3.98□□□□□ -1.77
HOXA4Q00056 ZNF415-201ENST00000243643 2270 ntAPPRIS P3 TSL 1 (best) BASIC3.98□□□□□ -1.77
HOXA4Q00056 PAN3-202ENST00000399613 4940 ntAPPRIS ALT2 TSL 5 BASIC3.98□□□□□ -1.77
HOXA4Q00056 CLCA1-202ENST00000394711 3118 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
HOXA4Q00056 PDCD1LG2-201ENST00000397747 2365 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
HOXA4Q00056 UGP2-229ENST00000613823 1858 ntAPPRIS ALT1 TSL 5 BASIC3.98□□□□□ -1.77
HOXA4Q00056 RAP1B-201ENST00000250559 13438 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
HOXA4Q00056 GOLPH3L-201ENST00000271732 2999 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
HOXA4Q00056 AC093849.1-201ENST00000563631 2209 ntBASIC3.98□□□□□ -1.77
HOXA4Q00056 CNTN5-207ENST00000527185 4303 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
HOXA4Q00056 PCDH15-214ENST00000395446 3948 ntTSL 5 BASIC3.98□□□□□ -1.77
HOXA4Q00056 LINC00550-201ENST00000629293 3434 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
HOXA4Q00056 ING3-201ENST00000315870 3777 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
HOXA4Q00056 AL445487.1-201ENST00000415694 1580 ntBASIC3.97□□□□□ -1.77
HOXA4Q00056 AC108467.2-201ENST00000617640 1597 ntBASIC3.97□□□□□ -1.77
HOXA4Q00056 AC107068.1-201ENST00000563286 4218 ntBASIC3.97□□□□□ -1.77
HOXA4Q00056 RXFP1-204ENST00000423548 3930 ntTSL 2 BASIC3.97□□□□□ -1.77
HOXA4Q00056 PCAT14-202ENST00000627127 3935 ntBASIC3.97□□□□□ -1.77
HOXA4Q00056 ADAM7-202ENST00000380789 3358 ntAPPRIS ALT2 TSL 5 BASIC3.97□□□□□ -1.77
HOXA4Q00056 PTPRO-203ENST00000442921 3030 ntAPPRIS ALT2 TSL 1 (best) BASIC3.97□□□□□ -1.77
HOXA4Q00056 PHKBP1-201ENST00000450951 1951 ntBASIC3.97□□□□□ -1.77
HOXA4Q00056 Y_RNA.86-201ENST00000363020 111 ntBASIC3.97□□□□□ -1.77
HOXA4Q00056 RNY3P3-201ENST00000363816 102 ntBASIC3.97□□□□□ -1.77
HOXA4Q00056 RNY1P12-201ENST00000364251 105 ntBASIC3.97□□□□□ -1.77
HOXA4Q00056 RNVU1-3-201ENST00000364313 161 ntBASIC3.97□□□□□ -1.77
HOXA4Q00056 C1orf54-201ENST00000369098 418 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
HOXA4Q00056 RNA5SP87-201ENST00000384155 118 ntBASIC3.97□□□□□ -1.77
HOXA4Q00056 TRAV8-1-201ENST00000390430 473 ntAPPRIS P1 BASIC3.97□□□□□ -1.77
HOXA4Q00056 U3.20-201ENST00000390909 217 ntBASIC3.97□□□□□ -1.77
HOXA4Q00056 AL590762.2-201ENST00000395798 571 ntBASIC3.97□□□□□ -1.77
HOXA4Q00056 RPL7P60-201ENST00000397636 735 ntBASIC3.97□□□□□ -1.77
HOXA4Q00056 U3.35-201ENST00000408405 208 ntBASIC3.97□□□□□ -1.77
HOXA4Q00056 RNU2-9P-201ENST00000410194 145 ntBASIC3.97□□□□□ -1.77
HOXA4Q00056 RN7SKP263-201ENST00000411194 309 ntBASIC3.97□□□□□ -1.77
HOXA4Q00056 AC009505.1-201ENST00000413151 424 ntTSL 2 BASIC3.97□□□□□ -1.77
HOXA4Q00056 AC114755.2-201ENST00000413520 361 ntBASIC3.97□□□□□ -1.77
HOXA4Q00056 AC069213.2-201ENST00000420238 366 ntBASIC3.97□□□□□ -1.77
HOXA4Q00056 AL157786.1-206ENST00000424422 551 ntTSL 3 BASIC3.97□□□□□ -1.77
HOXA4Q00056 AL451139.1-201ENST00000434718 346 ntBASIC3.97□□□□□ -1.77
HOXA4Q00056 AC108734.1-201ENST00000439549 399 ntBASIC3.97□□□□□ -1.77
HOXA4Q00056 AC099566.1-201ENST00000442558 479 ntTSL 3 BASIC3.97□□□□□ -1.77
HOXA4Q00056 AC114814.3-201ENST00000449362 663 ntTSL 2 BASIC3.97□□□□□ -1.77
HOXA4Q00056 AL442647.1-201ENST00000449485 481 ntTSL 5 BASIC3.97□□□□□ -1.77
HOXA4Q00056 AL354771.1-201ENST00000452178 602 ntTSL 5 BASIC3.97□□□□□ -1.77
HOXA4Q00056 AC083798.1-201ENST00000472671 131 ntBASIC3.97□□□□□ -1.77
HOXA4Q00056 RPL23AP41-201ENST00000484754 458 ntBASIC3.97□□□□□ -1.77
HOXA4Q00056 HMGB3P16-201ENST00000508037 287 ntBASIC3.97□□□□□ -1.77
HOXA4Q00056 AL033397.2-201ENST00000508884 547 ntTSL 2 BASIC3.97□□□□□ -1.77
HOXA4Q00056 MTCO3P44-201ENST00000510977 541 ntBASIC3.97□□□□□ -1.77
HOXA4Q00056 AC021146.1-201ENST00000511202 716 ntBASIC3.97□□□□□ -1.77
HOXA4Q00056 AC008728.1-201ENST00000512730 691 ntTSL 2 BASIC3.97□□□□□ -1.77
HOXA4Q00056 AC124854.1-202ENST00000513779 339 ntTSL 3 BASIC3.97□□□□□ -1.77
HOXA4Q00056 AC022360.2-202ENST00000517308 407 ntTSL 3 BASIC3.97□□□□□ -1.77
HOXA4Q00056 AC083923.2-203ENST00000520512 372 ntTSL 3 BASIC3.97□□□□□ -1.77
HOXA4Q00056 AC113145.1-201ENST00000522408 412 ntTSL 5 BASIC3.97□□□□□ -1.77
HOXA4Q00056 DEUP1-203ENST00000527307 767 ntTSL 3 BASIC3.97□□□□□ -1.77
HOXA4Q00056 AC084291.1-201ENST00000544667 548 ntTSL 2 BASIC3.97□□□□□ -1.77
HOXA4Q00056 AC025575.1-201ENST00000548497 544 ntTSL 4 BASIC3.97□□□□□ -1.77
HOXA4Q00056 AL355073.1-201ENST00000560296 517 ntTSL 4 BASIC3.97□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 96.6 ms