Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 AC005332.10-201ENST00000612725 619 ntBASIC3.06□□□□□ -1.92
COL4A4P53420 AC068880.4-201ENST00000623082 495 ntBASIC3.06□□□□□ -1.92
COL4A4P53420 AP006248.3-201ENST00000623580 594 ntBASIC3.06□□□□□ -1.92
COL4A4P53420 SLITRK5-201ENST00000325089 21103 ntAPPRIS P1 TSL 1 (best) BASIC3.06□□□□□ -1.92
COL4A4P53420 ERBIN-201ENST00000284037 8647 ntTSL 1 (best) BASIC3.06□□□□□ -1.92
COL4A4P53420 DNAJC10-201ENST00000264065 20129 ntAPPRIS P1 TSL 1 (best) BASIC3.06□□□□□ -1.92
COL4A4P53420 FRS2-201ENST00000397997 6550 ntAPPRIS P1 TSL 5 BASIC3.06□□□□□ -1.92
COL4A4P53420 TMPRSS11A-201ENST00000334830 3054 ntAPPRIS P3 TSL 2 BASIC3.06□□□□□ -1.92
COL4A4P53420 MTCO1P9-201ENST00000505577 1534 ntBASIC3.05□□□□□ -1.92
COL4A4P53420 OR9H1P-201ENST00000446393 4888 ntAPPRIS P1 BASIC3.05□□□□□ -1.92
COL4A4P53420 ZNF658B-202ENST00000615961 3375 ntBASIC3.05□□□□□ -1.92
COL4A4P53420 ZNF29P-201ENST00000225587 168 ntBASIC3.05□□□□□ -1.92
COL4A4P53420 RNA5SP289-201ENST00000362332 137 ntBASIC3.05□□□□□ -1.92
COL4A4P53420 Y_RNA.226-201ENST00000364337 114 ntBASIC3.05□□□□□ -1.92
COL4A4P53420 TRAV26-1-201ENST00000390455 537 ntAPPRIS P1 BASIC3.05□□□□□ -1.92
COL4A4P53420 RPL22P22-201ENST00000395439 379 ntBASIC3.05□□□□□ -1.92
COL4A4P53420 RNA5SP508-201ENST00000411327 119 ntBASIC3.05□□□□□ -1.92
COL4A4P53420 AC004870.3-202ENST00000412996 432 ntTSL 3 BASIC3.05□□□□□ -1.92
COL4A4P53420 LINC01412-201ENST00000413525 362 ntTSL 2 BASIC3.05□□□□□ -1.92
COL4A4P53420 AL009048.1-201ENST00000450437 298 ntBASIC3.05□□□□□ -1.92
COL4A4P53420 LINC01813-201ENST00000451034 712 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
COL4A4P53420 AC116666.1-201ENST00000453915 551 ntTSL 5 BASIC3.05□□□□□ -1.92
COL4A4P53420 AC121764.2-201ENST00000469806 587 ntTSL 2 BASIC3.05□□□□□ -1.92
COL4A4P53420 AC078857.1-201ENST00000469870 667 ntBASIC3.05□□□□□ -1.92
COL4A4P53420 LINC02428-201ENST00000508099 527 ntTSL 5 BASIC3.05□□□□□ -1.92
COL4A4P53420 AC008549.1-201ENST00000512900 643 ntBASIC3.05□□□□□ -1.92
COL4A4P53420 SCGB1D5P-201ENST00000515134 247 ntBASIC3.05□□□□□ -1.92
COL4A4P53420 RNA5SP380-201ENST00000517190 98 ntBASIC3.05□□□□□ -1.92
COL4A4P53420 SKP1-208ENST00000521216 899 ntAPPRIS ALT1 TSL 5 BASIC3.05□□□□□ -1.92
COL4A4P53420 LRRC6P1-201ENST00000532188 885 ntBASIC3.05□□□□□ -1.92
COL4A4P53420 REXO2-218ENST00000544827 880 ntTSL 3 BASIC3.05□□□□□ -1.92
COL4A4P53420 AC090616.5-201ENST00000581225 299 ntTSL 5 BASIC3.05□□□□□ -1.92
COL4A4P53420 AC068790.6-201ENST00000602558 258 ntBASIC3.05□□□□□ -1.92
COL4A4P53420 AC069431.2-201ENST00000604149 1099 ntBASIC3.05□□□□□ -1.92
COL4A4P53420 AC002487.1-201ENST00000604565 994 ntBASIC3.05□□□□□ -1.92
COL4A4P53420 AC018926.1-201ENST00000616335 435 ntBASIC3.05□□□□□ -1.92
COL4A4P53420 AP003476.1-201ENST00000623984 516 ntBASIC3.05□□□□□ -1.92
COL4A4P53420 KNTC1-201ENST00000333479 6975 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
COL4A4P53420 MAPK10-362ENST00000641864 4484 ntBASIC3.05□□□□□ -1.92
COL4A4P53420 ATP2B1-202ENST00000359142 6977 ntTSL 5 BASIC3.05□□□□□ -1.92
COL4A4P53420 GPR34-202ENST00000378142 1928 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
COL4A4P53420 LINC00428-201ENST00000415620 227 ntTSL 5 BASIC3.04□□□□□ -1.92
COL4A4P53420 MRPL50P2-201ENST00000416821 482 ntBASIC3.04□□□□□ -1.92
COL4A4P53420 AC016907.1-201ENST00000419483 435 ntBASIC3.04□□□□□ -1.92
COL4A4P53420 AL353771.1-201ENST00000422107 457 ntTSL 3 BASIC3.04□□□□□ -1.92
COL4A4P53420 AC005189.1-201ENST00000431286 310 ntBASIC3.04□□□□□ -1.92
COL4A4P53420 RPS6P15-201ENST00000431996 751 ntBASIC3.04□□□□□ -1.92
COL4A4P53420 AC008568.1-203ENST00000433406 765 ntTSL 3 BASIC3.04□□□□□ -1.92
COL4A4P53420 TRAPPC13P1-201ENST00000435991 1062 ntBASIC3.04□□□□□ -1.92
COL4A4P53420 AL445490.2-201ENST00000440492 441 ntTSL 3 BASIC3.04□□□□□ -1.92
COL4A4P53420 AC009299.3-202ENST00000445372 538 ntTSL 3 BASIC3.04□□□□□ -1.92
COL4A4P53420 RPL7P12-201ENST00000446719 750 ntBASIC3.04□□□□□ -1.92
COL4A4P53420 AL157400.4-201ENST00000455699 667 ntTSL 1 (best) BASIC3.04□□□□□ -1.92
COL4A4P53420 FAIM-205ENST00000464668 641 ntAPPRIS P3 TSL 5 BASIC3.04□□□□□ -1.92
COL4A4P53420 AC073359.1-201ENST00000486545 521 ntTSL 2 BASIC3.04□□□□□ -1.92
COL4A4P53420 AC010486.2-201ENST00000505572 483 ntBASIC3.04□□□□□ -1.92
COL4A4P53420 AP001960.1-201ENST00000506494 658 ntBASIC3.04□□□□□ -1.92
COL4A4P53420 AC112178.1-201ENST00000511165 676 ntTSL 3 BASIC3.04□□□□□ -1.92
COL4A4P53420 AC096736.1-201ENST00000512609 947 ntTSL 3 BASIC3.04□□□□□ -1.92
COL4A4P53420 AC005150.1-201ENST00000512831 628 ntTSL 2 BASIC3.04□□□□□ -1.92
COL4A4P53420 AC012625.1-201ENST00000515153 625 ntTSL 5 BASIC3.04□□□□□ -1.92
COL4A4P53420 AC109466.1-214ENST00000522762 583 ntTSL 2 BASIC3.04□□□□□ -1.92
COL4A4P53420 C11orf65-206ENST00000529391 973 ntAPPRIS P1 TSL 2 BASIC3.04□□□□□ -1.92
COL4A4P53420 HTN3-205ENST00000530128 775 ntAPPRIS P2 TSL 2 BASIC3.04□□□□□ -1.92
COL4A4P53420 AP002993.1-201ENST00000538624 210 ntTSL 5 BASIC3.04□□□□□ -1.92
COL4A4P53420 OSBPL9P5-201ENST00000542581 171 ntBASIC3.04□□□□□ -1.92
COL4A4P53420 AL442163.2-201ENST00000553912 710 ntBASIC3.04□□□□□ -1.92
COL4A4P53420 AC012414.2-201ENST00000559474 187 ntBASIC3.04□□□□□ -1.92
COL4A4P53420 AC018554.1-201ENST00000565506 800 ntTSL 2 BASIC3.04□□□□□ -1.92
COL4A4P53420 AC106734.1-201ENST00000568646 663 ntBASIC3.04□□□□□ -1.92
COL4A4P53420 MTND3P13-201ENST00000574391 343 ntBASIC3.04□□□□□ -1.92
COL4A4P53420 KATNBL1P5-201ENST00000605015 517 ntBASIC3.04□□□□□ -1.92
COL4A4P53420 AC090425.2-201ENST00000608818 501 ntBASIC3.04□□□□□ -1.92
COL4A4P53420 AC013562.2-201ENST00000611632 603 ntBASIC3.04□□□□□ -1.92
COL4A4P53420 AC097460.3-201ENST00000623099 442 ntBASIC3.04□□□□□ -1.92
COL4A4P53420 AL512506.2-201ENST00000624472 458 ntBASIC3.04□□□□□ -1.92
COL4A4P53420 AL121594.5-201ENST00000631724 573 ntBASIC3.04□□□□□ -1.92
COL4A4P53420 LINC02211-204ENST00000642024 1070 ntBASIC3.04□□□□□ -1.92
COL4A4P53420 NEDD4-208ENST00000508342 7235 ntTSL 1 (best) BASIC3.04□□□□□ -1.92
COL4A4P53420 TTC6-201ENST00000267368 1681 ntTSL 5 BASIC3.04□□□□□ -1.92
COL4A4P53420 EMSY-210ENST00000529032 6848 ntAPPRIS P3 TSL 1 (best) BASIC3.04□□□□□ -1.92
COL4A4P53420 ATF7IP2-202ENST00000356427 3463 ntAPPRIS P1 TSL 1 (best) BASIC3.04□□□□□ -1.92
COL4A4P53420 BCLAF1-202ENST00000392348 2610 ntTSL 5 BASIC3.04□□□□□ -1.92
COL4A4P53420 ZCCHC10-201ENST00000324170 2178 ntAPPRIS P3 TSL 1 (best) BASIC3.04□□□□□ -1.92
COL4A4P53420 MYOT-208ENST00000515645 1578 ntTSL 2 BASIC3.04□□□□□ -1.92
COL4A4P53420 CACNB4-222ENST00000636350 7654 ntTSL 5 BASIC3.04□□□□□ -1.92
COL4A4P53420 Y_RNA.599-201ENST00000410489 109 ntBASIC3.04□□□□□ -1.92
COL4A4P53420 BBS9-205ENST00000425508 1252 ntTSL 1 (best) BASIC3.04□□□□□ -1.92
COL4A4P53420 AC023128.1-201ENST00000432431 799 ntTSL 3 BASIC3.04□□□□□ -1.92
COL4A4P53420 MTND2P5-201ENST00000432656 1006 ntBASIC3.04□□□□□ -1.92
COL4A4P53420 AP000146.1-202ENST00000441666 441 ntTSL 3 BASIC3.04□□□□□ -1.92
COL4A4P53420 IFNA11P-201ENST00000446352 526 ntBASIC3.04□□□□□ -1.92
COL4A4P53420 EXOSC3P1-201ENST00000448649 500 ntBASIC3.04□□□□□ -1.92
COL4A4P53420 AL589963.1-201ENST00000449282 727 ntTSL 3 BASIC3.04□□□□□ -1.92
COL4A4P53420 NDUFA6-201ENST00000470753 475 ntTSL 2 BASIC3.04□□□□□ -1.92
COL4A4P53420 AC109349.1-201ENST00000503299 758 ntTSL 1 (best) BASIC3.04□□□□□ -1.92
COL4A4P53420 AC107401.1-201ENST00000503426 685 ntBASIC3.04□□□□□ -1.92
COL4A4P53420 MTCO3P27-201ENST00000514397 196 ntBASIC3.04□□□□□ -1.92
COL4A4P53420 AC078906.1-201ENST00000523602 798 ntTSL 3 BASIC3.04□□□□□ -1.92
COL4A4P53420 EMP1-206ENST00000537612 505 ntTSL 3 BASIC3.04□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 81.8 ms