Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 AC053481.1-201ENST00000467217 306 ntBASIC5.45□□□□□ -1.54
LIG3P49916 RPL7L1P8-201ENST00000469911 741 ntBASIC5.45□□□□□ -1.54
LIG3P49916 COPS8P2-201ENST00000473228 627 ntBASIC5.45□□□□□ -1.54
LIG3P49916 AC087385.1-201ENST00000475062 312 ntBASIC5.45□□□□□ -1.54
LIG3P49916 RPL21P99-201ENST00000480369 423 ntBASIC5.45□□□□□ -1.54
LIG3P49916 RPS4XP1-201ENST00000482189 787 ntBASIC5.45□□□□□ -1.54
LIG3P49916 RN7SL447P-201ENST00000494711 245 ntBASIC5.45□□□□□ -1.54
LIG3P49916 AC024558.1-201ENST00000505008 528 ntBASIC5.45□□□□□ -1.54
LIG3P49916 AC091885.1-201ENST00000506658 268 ntBASIC5.45□□□□□ -1.54
LIG3P49916 MTCO3P44-201ENST00000510977 541 ntBASIC5.45□□□□□ -1.54
LIG3P49916 RN7SKP256-201ENST00000517201 314 ntBASIC5.45□□□□□ -1.54
LIG3P49916 AC060765.1-201ENST00000522776 544 ntTSL 4 BASIC5.45□□□□□ -1.54
LIG3P49916 LINC02168-201ENST00000565327 352 ntTSL 2 BASIC5.45□□□□□ -1.54
LIG3P49916 AC007599.2-201ENST00000573040 493 ntTSL 5 BASIC5.45□□□□□ -1.54
LIG3P49916 AC090621.1-201ENST00000592121 419 ntTSL 3 BASIC5.45□□□□□ -1.54
LIG3P49916 AC113139.1-201ENST00000605049 239 ntBASIC5.45□□□□□ -1.54
LIG3P49916 AL133255.1-201ENST00000606374 441 ntBASIC5.45□□□□□ -1.54
LIG3P49916 PXT1-202ENST00000619547 619 ntAPPRIS ALT2 TSL 1 (best) BASIC5.45□□□□□ -1.54
LIG3P49916 RNF111-212ENST00000561186 4536 ntTSL 2 BASIC5.45□□□□□ -1.54
LIG3P49916 POU2F1-212ENST00000541643 13937 ntAPPRIS ALT2 TSL 1 (best) BASIC5.44□□□□□ -1.54
LIG3P49916 PTPN12-206ENST00000435495 2526 ntTSL 2 BASIC5.44□□□□□ -1.54
LIG3P49916 RASGEF1B-207ENST00000509081 3016 ntAPPRIS ALT1 TSL 5 BASIC5.44□□□□□ -1.54
LIG3P49916 ADGRL2-204ENST00000370715 5585 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
LIG3P49916 CRISP3-201ENST00000263045 2170 ntAPPRIS P3 TSL 1 (best) BASIC5.44□□□□□ -1.54
LIG3P49916 RNU6-552P-201ENST00000362869 119 ntBASIC5.44□□□□□ -1.54
LIG3P49916 RNU4-66P-201ENST00000365199 138 ntBASIC5.44□□□□□ -1.54
LIG3P49916 RNU6-171P-201ENST00000384354 107 ntBASIC5.44□□□□□ -1.54
LIG3P49916 SNORD56.6-201ENST00000384569 71 ntBASIC5.44□□□□□ -1.54
LIG3P49916 TANK-203ENST00000402568 878 ntTSL 5 BASIC5.44□□□□□ -1.54
LIG3P49916 AL606923.1-201ENST00000406616 190 ntBASIC5.44□□□□□ -1.54
LIG3P49916 MRM2-202ENST00000407040 582 ntTSL 3 BASIC5.44□□□□□ -1.54
LIG3P49916 GSTM5P1-201ENST00000434751 660 ntBASIC5.44□□□□□ -1.54
LIG3P49916 AL162419.1-201ENST00000440674 873 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
LIG3P49916 RPS17P13-201ENST00000448974 407 ntBASIC5.44□□□□□ -1.54
LIG3P49916 PPP1R2P5-201ENST00000457256 603 ntBASIC5.44□□□□□ -1.54
LIG3P49916 AC010273.2-201ENST00000479830 438 ntTSL 5 BASIC5.44□□□□□ -1.54
LIG3P49916 GSTM1-206ENST00000483399 512 ntTSL 3 BASIC5.44□□□□□ -1.54
LIG3P49916 AC008539.1-201ENST00000507653 482 ntTSL 3 BASIC5.44□□□□□ -1.54
LIG3P49916 SLC7A11-AS1-201ENST00000510066 817 ntTSL 2 BASIC5.44□□□□□ -1.54
LIG3P49916 SEMA6A-AS1-204ENST00000510682 521 ntTSL 5 BASIC5.44□□□□□ -1.54
LIG3P49916 IGKV1OR2-1-201ENST00000514060 354 ntBASIC5.44□□□□□ -1.54
LIG3P49916 LINC00992-202ENST00000514186 564 ntTSL 5 BASIC5.44□□□□□ -1.54
LIG3P49916 RNA5SP228-201ENST00000516232 133 ntBASIC5.44□□□□□ -1.54
LIG3P49916 RN7SKP277-201ENST00000516895 283 ntBASIC5.44□□□□□ -1.54
LIG3P49916 IGLV2-28-201ENST00000520681 304 ntBASIC5.44□□□□□ -1.54
LIG3P49916 AC021242.2-203ENST00000521842 687 ntTSL 3 BASIC5.44□□□□□ -1.54
LIG3P49916 AC091944.1-201ENST00000521984 449 ntTSL 3 BASIC5.44□□□□□ -1.54
LIG3P49916 AL133271.1-201ENST00000538229 291 ntBASIC5.44□□□□□ -1.54
LIG3P49916 ZEB1-208ENST00000542815 3217 ntAPPRIS ALT2 TSL 2 BASIC5.44□□□□□ -1.54
LIG3P49916 AL132780.1-201ENST00000548819 556 ntTSL 4 BASIC5.44□□□□□ -1.54
LIG3P49916 LINC02286-201ENST00000552425 285 ntTSL 2 BASIC5.44□□□□□ -1.54
LIG3P49916 AC039056.1-201ENST00000552704 467 ntTSL 3 BASIC5.44□□□□□ -1.54
LIG3P49916 AL049779.2-201ENST00000553847 315 ntBASIC5.44□□□□□ -1.54
LIG3P49916 AF107885.2-202ENST00000557653 448 ntTSL 5 BASIC5.44□□□□□ -1.54
LIG3P49916 AL133153.1-201ENST00000557756 303 ntBASIC5.44□□□□□ -1.54
LIG3P49916 AC005341.1-201ENST00000571086 708 ntBASIC5.44□□□□□ -1.54
LIG3P49916 AC024267.4-201ENST00000580782 683 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
LIG3P49916 RPL26-207ENST00000583011 524 ntAPPRIS P1 TSL 3 BASIC5.44□□□□□ -1.54
LIG3P49916 IGKV1OR2-118-201ENST00000603238 347 ntBASIC5.44□□□□□ -1.54
LIG3P49916 DARS-AS1-220ENST00000607985 660 ntTSL 5 BASIC5.44□□□□□ -1.54
LIG3P49916 AC243829.4-202ENST00000610845 410 ntTSL 5 BASIC5.44□□□□□ -1.54
LIG3P49916 AC015914.2-201ENST00000618167 288 ntBASIC5.44□□□□□ -1.54
LIG3P49916 AL603758.1-201ENST00000618654 241 ntBASIC5.44□□□□□ -1.54
LIG3P49916 AC138058.1-201ENST00000620572 449 ntTSL 3 BASIC5.44□□□□□ -1.54
LIG3P49916 ST6GALNAC3-203ENST00000621530 617 ntTSL 5 BASIC5.44□□□□□ -1.54
LIG3P49916 C2orf27A-204ENST00000623058 969 ntBASIC5.44□□□□□ -1.54
LIG3P49916 LINC02261-201ENST00000512873 2802 ntTSL 2 BASIC5.44□□□□□ -1.54
LIG3P49916 ESF1-202ENST00000617257 1470 ntTSL 5 BASIC5.44□□□□□ -1.54
LIG3P49916 MMP16-201ENST00000286614 11558 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
LIG3P49916 MAP9-208ENST00000515654 2044 ntTSL 5 BASIC5.43□□□□□ -1.54
LIG3P49916 INPP4B-215ENST00000509777 4334 ntTSL 5 BASIC5.43□□□□□ -1.54
LIG3P49916 MUC2-202ENST00000613187 4845 ntBASIC5.43□□□□□ -1.54
LIG3P49916 GPBP1-205ENST00000511209 2243 ntAPPRIS ALT2 TSL 2 BASIC5.43□□□□□ -1.54
LIG3P49916 ZNF568-216ENST00000619231 3797 ntAPPRIS P1 TSL 3 BASIC5.43□□□□□ -1.54
LIG3P49916 DNAH14-208ENST00000430092 13763 ntAPPRIS P1 TSL 5 BASIC5.43□□□□□ -1.54
LIG3P49916 DSPP-202ENST00000399271 4331 ntAPPRIS P1 TSL 5 BASIC5.43□□□□□ -1.54
LIG3P49916 C5orf46-201ENST00000318315 506 ntAPPRIS P2 TSL 1 (best) BASIC5.43□□□□□ -1.54
LIG3P49916 OR4N5-201ENST00000333629 927 ntAPPRIS P1 BASIC5.43□□□□□ -1.54
LIG3P49916 OR2M2-201ENST00000359682 1044 ntAPPRIS P1 BASIC5.43□□□□□ -1.54
LIG3P49916 RNA5SP183-201ENST00000362452 119 ntBASIC5.43□□□□□ -1.54
LIG3P49916 RNU6-339P-201ENST00000384310 107 ntBASIC5.43□□□□□ -1.54
LIG3P49916 RNA5SP339-201ENST00000390987 122 ntBASIC5.43□□□□□ -1.54
LIG3P49916 AL136372.1-201ENST00000403060 228 ntBASIC5.43□□□□□ -1.54
LIG3P49916 RNU2-29P-201ENST00000410423 189 ntBASIC5.43□□□□□ -1.54
LIG3P49916 LINC00276-201ENST00000417751 596 ntTSL 2 BASIC5.43□□□□□ -1.54
LIG3P49916 AL451054.2-201ENST00000420896 202 ntBASIC5.43□□□□□ -1.54
LIG3P49916 HSPE1P1-201ENST00000421494 318 ntBASIC5.43□□□□□ -1.54
LIG3P49916 RPS12P5-201ENST00000423449 371 ntBASIC5.43□□□□□ -1.54
LIG3P49916 MTCYBP6-201ENST00000441810 138 ntBASIC5.43□□□□□ -1.54
LIG3P49916 AL163193.1-201ENST00000444895 788 ntBASIC5.43□□□□□ -1.54
LIG3P49916 AL161629.1-201ENST00000446201 457 ntTSL 3 BASIC5.43□□□□□ -1.54
LIG3P49916 AL356421.2-201ENST00000446733 197 ntTSL 3 BASIC5.43□□□□□ -1.54
LIG3P49916 LINC01422-203ENST00000447149 509 ntTSL 4 BASIC5.43□□□□□ -1.54
LIG3P49916 EIF4A1P11-201ENST00000451239 222 ntBASIC5.43□□□□□ -1.54
LIG3P49916 AL590639.1-201ENST00000456484 337 ntBASIC5.43□□□□□ -1.54
LIG3P49916 Y_RNA.632-201ENST00000459189 102 ntBASIC5.43□□□□□ -1.54
LIG3P49916 ST13P14-201ENST00000474095 734 ntBASIC5.43□□□□□ -1.54
LIG3P49916 AC004889.1-208ENST00000489077 423 ntTSL 3 BASIC5.43□□□□□ -1.54
LIG3P49916 ATP6V1G3-204ENST00000489986 449 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
LIG3P49916 AC006499.3-201ENST00000506077 748 ntBASIC5.43□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 91.4 ms