Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 AC092017.2-201ENST00000427600 362 ntBASIC3.35□□□□□ -1.87
CDX1P47902 AC018742.1-201ENST00000435237 488 ntTSL 3 BASIC3.35□□□□□ -1.87
CDX1P47902 AL117351.1-201ENST00000438864 766 ntBASIC3.35□□□□□ -1.87
CDX1P47902 MTCO3P20-201ENST00000454926 688 ntBASIC3.35□□□□□ -1.87
CDX1P47902 AC010884.1-201ENST00000456519 642 ntTSL 3 BASIC3.35□□□□□ -1.87
CDX1P47902 ARPC3P2-201ENST00000457786 533 ntBASIC3.35□□□□□ -1.87
CDX1P47902 RPL35AP15-201ENST00000468042 339 ntBASIC3.35□□□□□ -1.87
CDX1P47902 LINC00888-204ENST00000487386 421 ntBASIC3.35□□□□□ -1.87
CDX1P47902 SUB1-203ENST00000502897 562 ntAPPRIS P1 TSL 4 BASIC3.35□□□□□ -1.87
CDX1P47902 AC016933.1-201ENST00000504735 539 ntTSL 2 BASIC3.35□□□□□ -1.87
CDX1P47902 AC008652.1-201ENST00000505261 469 ntTSL 3 BASIC3.35□□□□□ -1.87
CDX1P47902 AC018752.1-201ENST00000507813 206 ntTSL 5 BASIC3.35□□□□□ -1.87
CDX1P47902 AC008958.1-201ENST00000511047 682 ntBASIC3.35□□□□□ -1.87
CDX1P47902 IL7R-208ENST00000511982 612 ntTSL 2 BASIC3.35□□□□□ -1.87
CDX1P47902 SUB1-211ENST00000512913 684 ntAPPRIS P1 TSL 2 BASIC3.35□□□□□ -1.87
CDX1P47902 AC017037.2-201ENST00000513850 890 ntBASIC3.35□□□□□ -1.87
CDX1P47902 AC034159.1-201ENST00000513885 583 ntBASIC3.35□□□□□ -1.87
CDX1P47902 SNORA31.8-201ENST00000516327 108 ntBASIC3.35□□□□□ -1.87
CDX1P47902 SNORA31.9-201ENST00000516429 84 ntBASIC3.35□□□□□ -1.87
CDX1P47902 MTERF3-203ENST00000522822 1148 ntTSL 2 BASIC3.35□□□□□ -1.87
CDX1P47902 AP003730.2-201ENST00000526385 546 ntTSL 3 BASIC3.35□□□□□ -1.87
CDX1P47902 AC105233.3-201ENST00000531125 744 ntBASIC3.35□□□□□ -1.87
CDX1P47902 TRAV8-5-201ENST00000537369 341 ntBASIC3.35□□□□□ -1.87
CDX1P47902 AL132780.1-201ENST00000548819 556 ntTSL 4 BASIC3.35□□□□□ -1.87
CDX1P47902 ZNF321P-202ENST00000550843 495 ntBASIC3.35□□□□□ -1.87
CDX1P47902 ZNF192P1-203ENST00000565888 810 ntBASIC3.35□□□□□ -1.87
CDX1P47902 LINC01633-201ENST00000566476 1091 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
CDX1P47902 AC009039.1-201ENST00000568711 471 ntTSL 4 BASIC3.35□□□□□ -1.87
CDX1P47902 AC025272.1-201ENST00000569661 483 ntTSL 2 BASIC3.35□□□□□ -1.87
CDX1P47902 EIF4A2P1-201ENST00000587313 1063 ntBASIC3.35□□□□□ -1.87
CDX1P47902 AC006116.8-203ENST00000587448 465 ntTSL 3 BASIC3.35□□□□□ -1.87
CDX1P47902 AC011461.1-201ENST00000592671 357 ntTSL 3 BASIC3.35□□□□□ -1.87
CDX1P47902 TEX41-222ENST00000597173 1134 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
CDX1P47902 ARF4P1-201ENST00000605447 541 ntBASIC3.35□□□□□ -1.87
CDX1P47902 Z98200.1-201ENST00000607298 470 ntBASIC3.35□□□□□ -1.87
CDX1P47902 AL450489.1-201ENST00000612071 468 ntBASIC3.35□□□□□ -1.87
CDX1P47902 FAM27D1-201ENST00000612308 341 ntBASIC3.35□□□□□ -1.87
CDX1P47902 AC008121.2-201ENST00000614647 523 ntBASIC3.35□□□□□ -1.87
CDX1P47902 AC244472.2-201ENST00000617639 406 ntAPPRIS P1 BASIC3.35□□□□□ -1.87
CDX1P47902 MIR8059-201ENST00000620427 81 ntBASIC3.35□□□□□ -1.87
CDX1P47902 AC018816.2-201ENST00000621460 353 ntBASIC3.35□□□□□ -1.87
CDX1P47902 ABCC9-206ENST00000621589 450 ntTSL 5 BASIC3.35□□□□□ -1.87
CDX1P47902 AL353748.2-201ENST00000622148 471 ntBASIC3.35□□□□□ -1.87
CDX1P47902 AC092628.2-201ENST00000622492 339 ntBASIC3.35□□□□□ -1.87
CDX1P47902 CPB2-201ENST00000181383 1717 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
CDX1P47902 DMXL1-201ENST00000311085 11072 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
CDX1P47902 ADAM29-201ENST00000359240 3325 ntAPPRIS P1 TSL 2 BASIC3.35□□□□□ -1.87
CDX1P47902 AP000526.1-201ENST00000603308 1388 ntBASIC3.35□□□□□ -1.87
CDX1P47902 MACC1-201ENST00000332878 2994 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
CDX1P47902 AL158064.1-201ENST00000627044 2242 ntTSL 4 BASIC3.35□□□□□ -1.87
CDX1P47902 UGT2B10-201ENST00000265403 1931 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
CDX1P47902 LINC02432-202ENST00000509161 2839 ntTSL 2 BASIC3.34□□□□□ -1.87
CDX1P47902 MTCO1P9-201ENST00000505577 1534 ntBASIC3.34□□□□□ -1.87
CDX1P47902 C12orf50-203ENST00000550553 1525 ntTSL 5 BASIC3.34□□□□□ -1.87
CDX1P47902 NKTR-219ENST00000617821 7319 ntTSL 5 BASIC3.34□□□□□ -1.87
CDX1P47902 OR56A3-203ENST00000641160 4438 ntAPPRIS P1 BASIC3.34□□□□□ -1.87
CDX1P47902 CYP3A4-201ENST00000336411 2153 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
CDX1P47902 LYST-201ENST00000389793 13480 ntAPPRIS P1 TSL 5 BASIC3.34□□□□□ -1.87
CDX1P47902 CCDC168-201ENST00000322527 21466 ntAPPRIS P1 TSL 3 BASIC3.34□□□□□ -1.87
CDX1P47902 PIGW-206ENST00000620233 2264 ntAPPRIS P1 TSL 2 BASIC3.34□□□□□ -1.87
CDX1P47902 OR5H2-202ENST00000356526 930 ntAPPRIS P1 BASIC3.34□□□□□ -1.87
CDX1P47902 Y_RNA.18-201ENST00000362461 102 ntBASIC3.34□□□□□ -1.87
CDX1P47902 GTSF1L-201ENST00000373003 835 ntAPPRIS P3 BASIC3.34□□□□□ -1.87
CDX1P47902 GTSF1L-202ENST00000373005 459 ntAPPRIS ALT2 TSL 3 BASIC3.34□□□□□ -1.87
CDX1P47902 MIR135A2-201ENST00000384854 100 ntBASIC3.34□□□□□ -1.87
CDX1P47902 ATP5F1P3-201ENST00000397213 657 ntBASIC3.34□□□□□ -1.87
CDX1P47902 AC119751.3-201ENST00000399720 670 ntBASIC3.34□□□□□ -1.87
CDX1P47902 AL024509.3-201ENST00000413898 745 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
CDX1P47902 CCDC58P2-201ENST00000417131 366 ntBASIC3.34□□□□□ -1.87
CDX1P47902 SSXP9-201ENST00000417503 292 ntBASIC3.34□□□□□ -1.87
CDX1P47902 RPL36AP36-201ENST00000418616 301 ntBASIC3.34□□□□□ -1.87
CDX1P47902 RPL9P9-201ENST00000418824 636 ntTSL 2 BASIC3.34□□□□□ -1.87
CDX1P47902 RBMY1KP-201ENST00000423480 476 ntBASIC3.34□□□□□ -1.87
CDX1P47902 AL357375.1-201ENST00000424274 525 ntTSL 3 BASIC3.34□□□□□ -1.87
CDX1P47902 LSM1P1-201ENST00000438629 273 ntBASIC3.34□□□□□ -1.87
CDX1P47902 AC083863.1-201ENST00000438811 231 ntBASIC3.34□□□□□ -1.87
CDX1P47902 AL591503.2-201ENST00000442314 1005 ntBASIC3.34□□□□□ -1.87
CDX1P47902 RPL21P133-201ENST00000443666 476 ntBASIC3.34□□□□□ -1.87
CDX1P47902 RAC1P7-201ENST00000445367 377 ntBASIC3.34□□□□□ -1.87
CDX1P47902 DIAPH2-AS1-202ENST00000445414 606 ntTSL 2 BASIC3.34□□□□□ -1.87
CDX1P47902 MTCO1P27-201ENST00000448269 226 ntBASIC3.34□□□□□ -1.87
CDX1P47902 AL008723.1-201ENST00000452181 590 ntTSL 5 BASIC3.34□□□□□ -1.87
CDX1P47902 HMGN2P16-201ENST00000456802 261 ntBASIC3.34□□□□□ -1.87
CDX1P47902 RPL30P9-201ENST00000465586 330 ntBASIC3.34□□□□□ -1.87
CDX1P47902 SNRPGP3-201ENST00000469405 227 ntBASIC3.34□□□□□ -1.87
CDX1P47902 AL049830.2-201ENST00000480072 201 ntBASIC3.34□□□□□ -1.87
CDX1P47902 AC041039.1-201ENST00000485656 536 ntBASIC3.34□□□□□ -1.87
CDX1P47902 HMGB1P36-201ENST00000487709 576 ntBASIC3.34□□□□□ -1.87
CDX1P47902 AP001025.2-201ENST00000490908 477 ntBASIC3.34□□□□□ -1.87
CDX1P47902 RN7SL691P-201ENST00000494487 301 ntBASIC3.34□□□□□ -1.87
CDX1P47902 MTCYBP35-201ENST00000503630 1137 ntBASIC3.34□□□□□ -1.87
CDX1P47902 BNIP3P41-201ENST00000503774 571 ntBASIC3.34□□□□□ -1.87
CDX1P47902 AC108475.1-201ENST00000507880 950 ntBASIC3.34□□□□□ -1.87
CDX1P47902 AC027613.1-201ENST00000508414 457 ntTSL 3 BASIC3.34□□□□□ -1.87
CDX1P47902 ERAP2-205ENST00000510309 1275 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
CDX1P47902 AC091906.1-201ENST00000511310 391 ntTSL 2 BASIC3.34□□□□□ -1.87
CDX1P47902 AC026780.1-201ENST00000512237 952 ntTSL 3 BASIC3.34□□□□□ -1.87
CDX1P47902 AC008780.1-201ENST00000513392 409 ntTSL 5 BASIC3.34□□□□□ -1.87
CDX1P47902 RNA5SP49-201ENST00000516450 115 ntBASIC3.34□□□□□ -1.87
CDX1P47902 AC109466.1-211ENST00000519327 496 ntTSL 3 BASIC3.34□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 104.3 ms