Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 MACROD2-IT1-202ENST00000605675 575 ntTSL 5 BASIC3.07□□□□□ -1.92
COL18A1P39060 XRN1-202ENST00000392981 5383 ntAPPRIS ALT1 TSL 1 (best) BASIC3.07□□□□□ -1.92
COL18A1P39060 ANKRD28-215ENST00000624145 6383 ntTSL 2 BASIC3.07□□□□□ -1.92
COL18A1P39060 POPDC3-201ENST00000254765 1345 ntAPPRIS P1 TSL 1 (best) BASIC3.07□□□□□ -1.92
COL18A1P39060 AC114546.3-201ENST00000623582 1734 ntBASIC3.07□□□□□ -1.92
COL18A1P39060 CSRNP3-202ENST00000342316 11684 ntAPPRIS P1 TSL 1 (best) BASIC3.07□□□□□ -1.92
COL18A1P39060 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC3.07□□□□□ -1.92
COL18A1P39060 UQCRFS1P3-201ENST00000407697 385 ntBASIC3.07□□□□□ -1.92
COL18A1P39060 RNU2-6P-201ENST00000411404 190 ntBASIC3.07□□□□□ -1.92
COL18A1P39060 AC107081.1-201ENST00000414975 361 ntBASIC3.07□□□□□ -1.92
COL18A1P39060 TRGV6-201ENST00000417928 299 ntBASIC3.07□□□□□ -1.92
COL18A1P39060 MTCO2P17-201ENST00000424336 677 ntBASIC3.07□□□□□ -1.92
COL18A1P39060 TRAPPC2P5-201ENST00000426293 308 ntBASIC3.07□□□□□ -1.92
COL18A1P39060 KRR1-202ENST00000438169 975 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
COL18A1P39060 AC104781.1-201ENST00000449838 397 ntTSL 3 BASIC3.07□□□□□ -1.92
COL18A1P39060 LINC01445-202ENST00000458615 679 ntTSL 2 BASIC3.07□□□□□ -1.92
COL18A1P39060 HMGN1P8-201ENST00000463578 288 ntBASIC3.07□□□□□ -1.92
COL18A1P39060 SAR1B-211ENST00000509937 455 ntTSL 5 BASIC3.07□□□□□ -1.92
COL18A1P39060 AC107886.1-201ENST00000526935 516 ntTSL 3 BASIC3.07□□□□□ -1.92
COL18A1P39060 AC116535.2-201ENST00000532365 441 ntTSL 5 BASIC3.07□□□□□ -1.92
COL18A1P39060 RFPL1S-203ENST00000539579 330 ntBASIC3.07□□□□□ -1.92
COL18A1P39060 SNRPGP18-201ENST00000553000 214 ntBASIC3.07□□□□□ -1.92
COL18A1P39060 MEG8-218ENST00000556720 456 ntTSL 3 BASIC3.07□□□□□ -1.92
COL18A1P39060 AC005858.1-201ENST00000620193 677 ntTSL 2 BASIC3.07□□□□□ -1.92
COL18A1P39060 GABRG2-209ENST00000638660 3799 ntTSL 5 BASIC3.07□□□□□ -1.92
COL18A1P39060 AC114316.2-202ENST00000502934 2957 ntTSL 2 BASIC3.07□□□□□ -1.92
COL18A1P39060 OR4K2-204ENST00000641885 8681 ntAPPRIS P1 BASIC3.07□□□□□ -1.92
COL18A1P39060 LINC01684-201ENST00000415182 2176 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
COL18A1P39060 CFH-202ENST00000367429 4127 ntAPPRIS P1 TSL 1 (best) BASIC3.06□□□□□ -1.92
COL18A1P39060 OR8H1-201ENST00000313022 1038 ntAPPRIS P2 BASIC3.06□□□□□ -1.92
COL18A1P39060 AL513175.2-201ENST00000422071 443 ntBASIC3.06□□□□□ -1.92
COL18A1P39060 AC010881.1-201ENST00000433830 235 ntBASIC3.06□□□□□ -1.92
COL18A1P39060 AC093716.1-201ENST00000435923 377 ntBASIC3.06□□□□□ -1.92
COL18A1P39060 COX6CP2-201ENST00000444980 225 ntBASIC3.06□□□□□ -1.92
COL18A1P39060 THAP6-203ENST00000502620 582 ntTSL 3 BASIC3.06□□□□□ -1.92
COL18A1P39060 LINC02465-201ENST00000507099 532 ntTSL 4 BASIC3.06□□□□□ -1.92
COL18A1P39060 RN7SKP282-201ENST00000516824 299 ntBASIC3.06□□□□□ -1.92
COL18A1P39060 AC025437.2-201ENST00000518103 548 ntTSL 4 BASIC3.06□□□□□ -1.92
COL18A1P39060 AC090819.1-201ENST00000523800 1111 ntBASIC3.06□□□□□ -1.92
COL18A1P39060 AC018630.1-201ENST00000541376 925 ntBASIC3.06□□□□□ -1.92
COL18A1P39060 AL109741.3-201ENST00000561748 592 ntBASIC3.06□□□□□ -1.92
COL18A1P39060 C18orf54-203ENST00000578138 776 ntTSL 3 BASIC3.06□□□□□ -1.92
COL18A1P39060 AC017076.1-201ENST00000607613 578 ntBASIC3.06□□□□□ -1.92
COL18A1P39060 MIR6845-201ENST00000613182 61 ntBASIC3.06□□□□□ -1.92
COL18A1P39060 DST-201ENST00000244364 16742 ntTSL 1 (best) BASIC3.06□□□□□ -1.92
COL18A1P39060 KCNRG-201ENST00000312942 1527 ntAPPRIS P1 TSL 1 (best) BASIC3.06□□□□□ -1.92
COL18A1P39060 RPS6KA6-204ENST00000620340 8169 ntTSL 5 BASIC3.06□□□□□ -1.92
COL18A1P39060 AC097714.1-201ENST00000511272 1647 ntBASIC3.05□□□□□ -1.92
COL18A1P39060 AC011155.1-201ENST00000316512 456 ntBASIC3.05□□□□□ -1.92
COL18A1P39060 U8.13-201ENST00000390842 128 ntBASIC3.05□□□□□ -1.92
COL18A1P39060 RBMS3-AS1-201ENST00000414547 554 ntTSL 4 BASIC3.05□□□□□ -1.92
COL18A1P39060 AL929288.1-201ENST00000426262 746 ntTSL 3 BASIC3.05□□□□□ -1.92
COL18A1P39060 RPL23AP11-201ENST00000475260 469 ntBASIC3.05□□□□□ -1.92
COL18A1P39060 VTA1P2-201ENST00000520205 911 ntBASIC3.05□□□□□ -1.92
COL18A1P39060 EMP1-206ENST00000537612 505 ntTSL 3 BASIC3.05□□□□□ -1.92
COL18A1P39060 AC103710.2-201ENST00000609912 942 ntBASIC3.05□□□□□ -1.92
COL18A1P39060 MIR6873-201ENST00000622788 63 ntBASIC3.05□□□□□ -1.92
COL18A1P39060 AKT3-201ENST00000263826 7081 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
COL18A1P39060 GABRA2-209ENST00000510861 3411 ntAPPRIS P1 TSL 5 BASIC3.05□□□□□ -1.92
COL18A1P39060 RFX3-203ENST00000381984 364 ntTSL 3 BASIC3.05□□□□□ -1.92
COL18A1P39060 TRAJ26-201ENST00000390511 60 ntAPPRIS P1 BASIC3.05□□□□□ -1.92
COL18A1P39060 RPS15AP6-201ENST00000420703 385 ntBASIC3.05□□□□□ -1.92
COL18A1P39060 AC004594.1-217ENST00000422260 325 ntTSL 2 BASIC3.05□□□□□ -1.92
COL18A1P39060 RWDD4P2-201ENST00000426392 563 ntBASIC3.05□□□□□ -1.92
COL18A1P39060 MTATP6P11-201ENST00000428071 670 ntBASIC3.05□□□□□ -1.92
COL18A1P39060 MTCYBP29-201ENST00000436327 1006 ntBASIC3.05□□□□□ -1.92
COL18A1P39060 TTTY16-201ENST00000437686 192 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
COL18A1P39060 AL137789.1-201ENST00000439443 682 ntTSL 3 BASIC3.05□□□□□ -1.92
COL18A1P39060 RPL7P52-201ENST00000449200 742 ntBASIC3.05□□□□□ -1.92
COL18A1P39060 GRM7-AS3-208ENST00000455623 947 ntTSL 3 BASIC3.05□□□□□ -1.92
COL18A1P39060 TRBV1-201ENST00000476502 284 ntBASIC3.05□□□□□ -1.92
COL18A1P39060 ODF2L-216ENST00000486215 311 ntTSL 2 BASIC3.05□□□□□ -1.92
COL18A1P39060 RWDD4P1-201ENST00000488019 565 ntBASIC3.05□□□□□ -1.92
COL18A1P39060 AC106872.2-201ENST00000494303 480 ntBASIC3.05□□□□□ -1.92
COL18A1P39060 AC109349.1-201ENST00000503299 758 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
COL18A1P39060 AC117525.1-201ENST00000515228 503 ntBASIC3.05□□□□□ -1.92
COL18A1P39060 AC067817.1-201ENST00000518535 356 ntTSL 2 BASIC3.05□□□□□ -1.92
COL18A1P39060 OR5BN1P-201ENST00000532955 829 ntBASIC3.05□□□□□ -1.92
COL18A1P39060 MYL12A-202ENST00000536605 899 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
COL18A1P39060 AC074029.1-201ENST00000552531 1044 ntBASIC3.05□□□□□ -1.92
COL18A1P39060 PPFIA2-AS1-210ENST00000553197 875 ntTSL 5 BASIC3.05□□□□□ -1.92
COL18A1P39060 MYL12A-209ENST00000580887 899 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
COL18A1P39060 AC090953.1-201ENST00000604305 1092 ntBASIC3.05□□□□□ -1.92
COL18A1P39060 AL139286.1-201ENST00000604465 483 ntBASIC3.05□□□□□ -1.92
COL18A1P39060 AC107031.1-201ENST00000604939 347 ntTSL 2 BASIC3.05□□□□□ -1.92
COL18A1P39060 AC117490.2-201ENST00000610042 594 ntBASIC3.05□□□□□ -1.92
COL18A1P39060 ABCD2-201ENST00000308666 6238 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
COL18A1P39060 CEP44-203ENST00000426172 3037 ntTSL 5 BASIC3.04□□□□□ -1.92
COL18A1P39060 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC3.04□□□□□ -1.92
COL18A1P39060 OR6C4-201ENST00000394256 1046 ntAPPRIS P1 BASIC3.04□□□□□ -1.92
COL18A1P39060 AC004160.1-211ENST00000445839 565 ntTSL 4 BASIC3.04□□□□□ -1.92
COL18A1P39060 AC132942.1-201ENST00000486753 483 ntBASIC3.04□□□□□ -1.92
COL18A1P39060 MTCYBP20-201ENST00000524239 1129 ntBASIC3.04□□□□□ -1.92
COL18A1P39060 AP000873.2-205ENST00000529031 435 ntTSL 2 BASIC3.04□□□□□ -1.92
COL18A1P39060 ATF7IP2-206ENST00000543967 998 ntTSL 2 BASIC3.04□□□□□ -1.92
COL18A1P39060 PSMA6P4-201ENST00000603247 718 ntBASIC3.04□□□□□ -1.92
COL18A1P39060 AC010200.2-201ENST00000605098 235 ntBASIC3.04□□□□□ -1.92
COL18A1P39060 CR589904.2-201ENST00000612533 440 ntBASIC3.04□□□□□ -1.92
COL18A1P39060 ZNF480-202ENST00000335090 2722 ntTSL 3 BASIC3.04□□□□□ -1.92
COL18A1P39060 C9orf153-204ENST00000613665 1738 ntAPPRIS P2 TSL 2 BASIC3.04□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 92.9 ms