Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 SAGE2P-201ENST00000420011 2126 ntBASIC4.59□□□□□ -1.67
MSX2P35548 AL592293.2-201ENST00000422292 996 ntBASIC4.59□□□□□ -1.67
MSX2P35548 AC108075.1-201ENST00000424692 529 ntBASIC4.59□□□□□ -1.67
MSX2P35548 AL138785.1-201ENST00000425821 331 ntBASIC4.59□□□□□ -1.67
MSX2P35548 AL590378.1-201ENST00000426818 303 ntTSL 3 BASIC4.59□□□□□ -1.67
MSX2P35548 AC068481.1-202ENST00000428379 555 ntTSL 4 BASIC4.59□□□□□ -1.67
MSX2P35548 DHX9P1-201ENST00000436565 3076 ntBASIC4.59□□□□□ -1.67
MSX2P35548 RPL7P12-201ENST00000446719 750 ntBASIC4.59□□□□□ -1.67
MSX2P35548 AC005062.1-201ENST00000457921 566 ntTSL 3 BASIC4.59□□□□□ -1.67
MSX2P35548 RN7SL817P-201ENST00000480777 288 ntBASIC4.59□□□□□ -1.67
MSX2P35548 AC034222.1-201ENST00000494052 532 ntBASIC4.59□□□□□ -1.67
MSX2P35548 AC004803.1-201ENST00000503602 3207 ntTSL 1 (best) BASIC4.59□□□□□ -1.67
MSX2P35548 TNFAIP8-205ENST00000504642 711 ntTSL 3 BASIC4.59□□□□□ -1.67
MSX2P35548 IRF5P1-201ENST00000504852 2164 ntBASIC4.59□□□□□ -1.67
MSX2P35548 AC103851.1-201ENST00000506833 274 ntBASIC4.59□□□□□ -1.67
MSX2P35548 AC097478.1-202ENST00000508021 567 ntTSL 4 BASIC4.59□□□□□ -1.67
MSX2P35548 AC126768.3-201ENST00000514519 560 ntTSL 4 BASIC4.59□□□□□ -1.67
MSX2P35548 RNA5SP362-201ENST00000516048 118 ntBASIC4.59□□□□□ -1.67
MSX2P35548 RNU7-30P-201ENST00000516835 62 ntBASIC4.59□□□□□ -1.67
MSX2P35548 RNU6-1220P-201ENST00000517126 108 ntBASIC4.59□□□□□ -1.67
MSX2P35548 RNU6-709P-201ENST00000517257 104 ntBASIC4.59□□□□□ -1.67
MSX2P35548 IGLV2-28-201ENST00000520681 304 ntBASIC4.59□□□□□ -1.67
MSX2P35548 AC079209.1-202ENST00000521953 522 ntTSL 3 BASIC4.59□□□□□ -1.67
MSX2P35548 AC107934.1-201ENST00000522215 217 ntBASIC4.59□□□□□ -1.67
MSX2P35548 AC022616.3-201ENST00000523940 148 ntBASIC4.59□□□□□ -1.67
MSX2P35548 CASP1-212ENST00000531166 300 ntTSL 5 BASIC4.59□□□□□ -1.67
MSX2P35548 AC023050.3-201ENST00000541142 333 ntBASIC4.59□□□□□ -1.67
MSX2P35548 GSTP1P1-201ENST00000548078 319 ntBASIC4.59□□□□□ -1.67
MSX2P35548 FKBP1BP1-201ENST00000553366 325 ntBASIC4.59□□□□□ -1.67
MSX2P35548 LINC00644-201ENST00000555156 295 ntTSL 2 BASIC4.59□□□□□ -1.67
MSX2P35548 AC009396.3-201ENST00000555680 354 ntTSL 5 BASIC4.59□□□□□ -1.67
MSX2P35548 FOPNL-205ENST00000573429 646 ntTSL 3 BASIC4.59□□□□□ -1.67
MSX2P35548 AC019080.3-201ENST00000606180 444 ntTSL 5 BASIC4.59□□□□□ -1.67
MSX2P35548 AL360267.1-201ENST00000607309 666 ntTSL 4 BASIC4.59□□□□□ -1.67
MSX2P35548 SDR42E1P1-201ENST00000611327 477 ntBASIC4.59□□□□□ -1.67
MSX2P35548 RNA5SP440-201ENST00000612665 119 ntBASIC4.59□□□□□ -1.67
MSX2P35548 AC107081.3-201ENST00000612715 2034 ntBASIC4.59□□□□□ -1.67
MSX2P35548 AC131238.1-201ENST00000617135 328 ntBASIC4.59□□□□□ -1.67
MSX2P35548 C2orf27A-204ENST00000623058 969 ntBASIC4.59□□□□□ -1.67
MSX2P35548 AL356585.4-201ENST00000623078 1229 ntBASIC4.59□□□□□ -1.67
MSX2P35548 AC093495.1-217ENST00000627385 428 ntTSL 5 BASIC4.59□□□□□ -1.67
MSX2P35548 OR8J3-203ENST00000641913 3047 ntAPPRIS P1 BASIC4.59□□□□□ -1.67
MSX2P35548 TET2-202ENST00000305737 9233 ntTSL 1 (best) BASIC4.59□□□□□ -1.68
MSX2P35548 ZNF568-216ENST00000619231 3797 ntAPPRIS P1 TSL 3 BASIC4.59□□□□□ -1.68
MSX2P35548 SCEL-201ENST00000349847 2386 ntAPPRIS P4 TSL 1 (best) BASIC4.58□□□□□ -1.68
MSX2P35548 EMSY-207ENST00000525919 4074 ntAPPRIS ALT1 TSL 1 (best) BASIC4.58□□□□□ -1.68
MSX2P35548 OMG-201ENST00000247271 1947 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
MSX2P35548 AC011493.1-201ENST00000596753 1632 ntBASIC4.58□□□□□ -1.68
MSX2P35548 TPTE2-203ENST00000390680 1558 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
MSX2P35548 NUTM2B-AS1-213ENST00000619625 7611 ntTSL 2 BASIC4.58□□□□□ -1.68
MSX2P35548 ABCB5-201ENST00000258738 2906 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
MSX2P35548 CTXN2-201ENST00000417307 2828 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
MSX2P35548 RPL7P26-201ENST00000333817 754 ntBASIC4.58□□□□□ -1.68
MSX2P35548 RNU6-223P-201ENST00000362830 107 ntBASIC4.58□□□□□ -1.68
MSX2P35548 RNU1-20P-201ENST00000363314 162 ntBASIC4.58□□□□□ -1.68
MSX2P35548 RNU6-853P-201ENST00000364306 107 ntBASIC4.58□□□□□ -1.68
MSX2P35548 RNU6-108P-201ENST00000365558 107 ntBASIC4.58□□□□□ -1.68
MSX2P35548 TEX35-202ENST00000367639 785 ntAPPRIS ALT2 TSL 1 (best) BASIC4.58□□□□□ -1.68
MSX2P35548 MIR649-201ENST00000384843 97 ntBASIC4.58□□□□□ -1.68
MSX2P35548 MDM2-208ENST00000393410 732 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
MSX2P35548 AC016769.3-201ENST00000396562 315 ntBASIC4.58□□□□□ -1.68
MSX2P35548 RPL32P23-201ENST00000397237 405 ntBASIC4.58□□□□□ -1.68
MSX2P35548 AL162578.1-201ENST00000406202 378 ntBASIC4.58□□□□□ -1.68
MSX2P35548 RNU6-1148P-201ENST00000410992 104 ntBASIC4.58□□□□□ -1.68
MSX2P35548 AL133384.1-201ENST00000412744 351 ntBASIC4.58□□□□□ -1.68
MSX2P35548 AC073136.2-201ENST00000417282 849 ntBASIC4.58□□□□□ -1.68
MSX2P35548 AL807761.1-201ENST00000417622 171 ntBASIC4.58□□□□□ -1.68
MSX2P35548 ELOCP4-201ENST00000420090 333 ntBASIC4.58□□□□□ -1.68
MSX2P35548 OR2AM1P-201ENST00000422137 422 ntBASIC4.58□□□□□ -1.68
MSX2P35548 AC018644.1-201ENST00000429934 551 ntBASIC4.58□□□□□ -1.68
MSX2P35548 AL731563.2-201ENST00000431293 291 ntTSL 5 BASIC4.58□□□□□ -1.68
MSX2P35548 ZNF385D-AS2-201ENST00000436306 424 ntTSL 5 BASIC4.58□□□□□ -1.68
MSX2P35548 USP9YP15-201ENST00000442391 422 ntBASIC4.58□□□□□ -1.68
MSX2P35548 AC000111.2-201ENST00000448200 210 ntBASIC4.58□□□□□ -1.68
MSX2P35548 PLCB1-IT1-202ENST00000451443 251 ntTSL 3 BASIC4.58□□□□□ -1.68
MSX2P35548 IFNWP4-201ENST00000453148 294 ntBASIC4.58□□□□□ -1.68
MSX2P35548 RPS20P32-201ENST00000456044 356 ntBASIC4.58□□□□□ -1.68
MSX2P35548 RPL7P39-201ENST00000481157 744 ntBASIC4.58□□□□□ -1.68
MSX2P35548 AC108693.1-201ENST00000496068 432 ntBASIC4.58□□□□□ -1.68
MSX2P35548 AC008629.1-202ENST00000504820 525 ntTSL 4 BASIC4.58□□□□□ -1.68
MSX2P35548 AC108517.1-201ENST00000512546 327 ntTSL 3 BASIC4.58□□□□□ -1.68
MSX2P35548 AC112206.3-201ENST00000514578 389 ntBASIC4.58□□□□□ -1.68
MSX2P35548 SNORA19.2-201ENST00000516013 114 ntBASIC4.58□□□□□ -1.68
MSX2P35548 AF186190.1-201ENST00000517470 480 ntBASIC4.58□□□□□ -1.68
MSX2P35548 AC100768.1-201ENST00000525512 506 ntTSL 3 BASIC4.58□□□□□ -1.68
MSX2P35548 PDCD5P1-201ENST00000543528 309 ntBASIC4.58□□□□□ -1.68
MSX2P35548 LINC02326-201ENST00000552028 540 ntTSL 3 BASIC4.58□□□□□ -1.68
MSX2P35548 AL157688.1-201ENST00000555990 369 ntTSL 3 BASIC4.58□□□□□ -1.68
MSX2P35548 AC087477.3-201ENST00000559214 552 ntTSL 4 BASIC4.58□□□□□ -1.68
MSX2P35548 AC093249.4-201ENST00000564755 259 ntBASIC4.58□□□□□ -1.68
MSX2P35548 ATP5J2P6-201ENST00000565203 266 ntBASIC4.58□□□□□ -1.68
MSX2P35548 AC010551.2-201ENST00000569200 416 ntTSL 3 BASIC4.58□□□□□ -1.68
MSX2P35548 RN7SL176P-201ENST00000580352 264 ntBASIC4.58□□□□□ -1.68
MSX2P35548 AC209154.1-201ENST00000582156 337 ntBASIC4.58□□□□□ -1.68
MSX2P35548 MIR3176-201ENST00000582210 90 ntBASIC4.58□□□□□ -1.68
MSX2P35548 AL353997.4-201ENST00000586196 166 ntBASIC4.58□□□□□ -1.68
MSX2P35548 AC243960.4-201ENST00000600532 288 ntBASIC4.58□□□□□ -1.68
MSX2P35548 AC005191.1-201ENST00000603950 358 ntBASIC4.58□□□□□ -1.68
MSX2P35548 AL133255.1-201ENST00000606374 441 ntBASIC4.58□□□□□ -1.68
MSX2P35548 Z98949.1-212ENST00000609820 837 ntTSL 5 BASIC4.58□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 99.6 ms