Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 RPS3AP9-201ENST00000417027 792 ntBASIC2.32□□□□□ -2.04
VCANP13611 SDCBPP3-201ENST00000419629 891 ntBASIC2.32□□□□□ -2.04
VCANP13611 AL358075.3-201ENST00000426289 226 ntBASIC2.32□□□□□ -2.04
VCANP13611 AC016903.1-201ENST00000444017 588 ntTSL 4 BASIC2.32□□□□□ -2.04
VCANP13611 ZNF788-206ENST00000596883 692 ntTSL 3 BASIC2.32□□□□□ -2.04
VCANP13611 AC010872.1-201ENST00000624225 675 ntBASIC2.32□□□□□ -2.04
VCANP13611 ANKAR-209ENST00000520309 4410 ntAPPRIS P1 TSL 5 BASIC2.32□□□□□ -2.04
VCANP13611 FRS2-201ENST00000397997 6550 ntAPPRIS P1 TSL 5 BASIC2.32□□□□□ -2.04
VCANP13611 LINC00301-202ENST00000412599 772 ntTSL 1 (best) BASIC2.32□□□□□ -2.04
VCANP13611 LANCL1-AS1-201ENST00000416344 714 ntTSL 3 BASIC2.32□□□□□ -2.04
VCANP13611 AL590399.3-201ENST00000438072 543 ntTSL 5 BASIC2.32□□□□□ -2.04
VCANP13611 MRPL50P4-201ENST00000446432 475 ntBASIC2.32□□□□□ -2.04
VCANP13611 SNORA9.3-201ENST00000516383 129 ntBASIC2.32□□□□□ -2.04
VCANP13611 AC107398.4-201ENST00000635489 765 ntTSL 2 BASIC2.32□□□□□ -2.04
VCANP13611 MIR219B-201ENST00000637023 88 ntBASIC2.32□□□□□ -2.04
VCANP13611 RAD51AP1-201ENST00000228843 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC2.31□□□□□ -2.04
VCANP13611 DNAH12-208ENST00000495027 12146 ntAPPRIS P1 TSL 5 BASIC2.31□□□□□ -2.04
VCANP13611 AC126182.1-201ENST00000478134 357 ntBASIC2.31□□□□□ -2.04
VCANP13611 MIR3683-201ENST00000580847 82 ntBASIC2.31□□□□□ -2.04
VCANP13611 AP005137.2-201ENST00000609238 400 ntBASIC2.31□□□□□ -2.04
VCANP13611 AC215522.3-201ENST00000635602 354 ntTSL 5 BASIC2.31□□□□□ -2.04
VCANP13611 MIR3199-2-201ENST00000636243 86 ntBASIC2.31□□□□□ -2.04
VCANP13611 FAM126B-202ENST00000418596 9333 ntAPPRIS P1 TSL 1 (best) BASIC2.31□□□□□ -2.04
VCANP13611 ZNF780B-202ENST00000434248 8665 ntAPPRIS P1 TSL 5 BASIC2.31□□□□□ -2.04
VCANP13611 ZNF780B-207ENST00000617676 8664 ntAPPRIS P1 TSL 5 BASIC2.31□□□□□ -2.04
VCANP13611 SPATA17-201ENST00000366933 5818 ntAPPRIS P1 TSL 1 (best) BASIC2.31□□□□□ -2.04
VCANP13611 AC233981.2-201ENST00000611524 1614 ntBASIC2.31□□□□□ -2.04
VCANP13611 XIRP2-207ENST00000628543 12182 ntTSL 5 BASIC2.31□□□□□ -2.04
VCANP13611 Y_RNA.30-201ENST00000362572 97 ntBASIC2.31□□□□□ -2.04
VCANP13611 KLRC2-202ENST00000381902 1221 ntAPPRIS P2 TSL 1 (best) BASIC2.31□□□□□ -2.04
VCANP13611 RN7SKP247-201ENST00000411094 308 ntBASIC2.31□□□□□ -2.04
VCANP13611 PPP1R2P5-201ENST00000457256 603 ntBASIC2.31□□□□□ -2.04
VCANP13611 MTCYBP20-201ENST00000524239 1129 ntBASIC2.31□□□□□ -2.04
VCANP13611 AP005433.1-202ENST00000580845 521 ntTSL 4 BASIC2.31□□□□□ -2.04
VCANP13611 LINC02477-201ENST00000512652 1417 ntTSL 5 BASIC2.31□□□□□ -2.04
VCANP13611 DEFB106A-201ENST00000335186 303 ntAPPRIS P1 TSL 1 (best) BASIC2.3□□□□□ -2.04
VCANP13611 AL024497.2-201ENST00000457081 317 ntTSL 3 BASIC2.3□□□□□ -2.04
VCANP13611 AL451137.1-201ENST00000523363 443 ntTSL 3 BASIC2.3□□□□□ -2.04
VCANP13611 AL161757.2-201ENST00000553800 421 ntTSL 3 BASIC2.3□□□□□ -2.04
VCANP13611 AC007620.3-201ENST00000608131 497 ntBASIC2.3□□□□□ -2.04
VCANP13611 AC025048.6-202ENST00000627667 438 ntBASIC2.3□□□□□ -2.04
VCANP13611 OR5A2-203ENST00000641673 9444 ntAPPRIS P1 BASIC2.3□□□□□ -2.04
VCANP13611 MTND5P35-201ENST00000557537 1720 ntBASIC2.3□□□□□ -2.04
VCANP13611 ATF2-204ENST00000409437 3697 ntTSL 5 BASIC2.3□□□□□ -2.04
VCANP13611 SCEL-202ENST00000377246 3081 ntAPPRIS ALT2 TSL 1 (best) BASIC2.3□□□□□ -2.04
VCANP13611 CSRNP3-202ENST00000342316 11684 ntAPPRIS P1 TSL 1 (best) BASIC2.3□□□□□ -2.04
VCANP13611 SERPINI2-206ENST00000471111 1331 ntAPPRIS P1 TSL 1 (best) BASIC2.3□□□□□ -2.04
VCANP13611 AC080125.1-201ENST00000414888 684 ntBASIC2.3□□□□□ -2.04
VCANP13611 VN1R17P-201ENST00000472048 1090 ntBASIC2.3□□□□□ -2.04
VCANP13611 AC092364.1-201ENST00000598561 471 ntTSL 3 BASIC2.3□□□□□ -2.04
VCANP13611 UTRN-204ENST00000367545 12339 ntAPPRIS P1 TSL 5 BASIC2.3□□□□□ -2.04
VCANP13611 RNA5SP383-201ENST00000362934 120 ntBASIC2.3□□□□□ -2.04
VCANP13611 RNU1-100P-201ENST00000365255 165 ntBASIC2.3□□□□□ -2.04
VCANP13611 NCSTNP1-201ENST00000406229 144 ntBASIC2.3□□□□□ -2.04
VCANP13611 AL451074.5-201ENST00000415894 435 ntBASIC2.3□□□□□ -2.04
VCANP13611 AL139118.1-201ENST00000432707 446 ntTSL 3 BASIC2.3□□□□□ -2.04
VCANP13611 FABP5P13-201ENST00000452144 328 ntBASIC2.3□□□□□ -2.04
VCANP13611 AC092155.2-201ENST00000454675 477 ntBASIC2.3□□□□□ -2.04
VCANP13611 AC131238.1-201ENST00000617135 328 ntBASIC2.3□□□□□ -2.04
VCANP13611 AC091953.2-201ENST00000623979 160 ntBASIC2.3□□□□□ -2.04
VCANP13611 ARHGAP12-201ENST00000311380 4625 ntTSL 1 (best) BASIC2.3□□□□□ -2.04
VCANP13611 MTND4P10-201ENST00000446199 1363 ntBASIC2.29□□□□□ -2.04
VCANP13611 NEBL-202ENST00000377122 9216 ntTSL 1 (best) BASIC2.29□□□□□ -2.04
VCANP13611 HMGB3P23-201ENST00000414981 585 ntBASIC2.29□□□□□ -2.04
VCANP13611 FO393414.1-201ENST00000428697 1184 ntBASIC2.29□□□□□ -2.04
VCANP13611 AC098826.1-201ENST00000433943 471 ntBASIC2.29□□□□□ -2.04
VCANP13611 RPS7P2-201ENST00000435134 607 ntBASIC2.29□□□□□ -2.04
VCANP13611 AC140059.1-201ENST00000489238 361 ntBASIC2.29□□□□□ -2.04
VCANP13611 AP005059.2-201ENST00000577527 578 ntTSL 3 BASIC2.29□□□□□ -2.04
VCANP13611 AC096708.3-201ENST00000584226 559 ntTSL 2 BASIC2.29□□□□□ -2.04
VCANP13611 AL353811.1-201ENST00000602851 736 ntTSL 5 BASIC2.29□□□□□ -2.04
VCANP13611 AP005901.5-201ENST00000545779 1796 ntBASIC2.29□□□□□ -2.04
VCANP13611 AC107027.3-201ENST00000565095 3473 ntBASIC2.29□□□□□ -2.04
VCANP13611 OR5H14-202ENST00000641380 7323 ntAPPRIS P1 BASIC2.29□□□□□ -2.04
VCANP13611 OR56A1-203ENST00000641900 8448 ntAPPRIS P1 BASIC2.29□□□□□ -2.04
VCANP13611 CACNB4-243ENST00000637217 8188 ntTSL 5 BASIC2.29□□□□□ -2.04
VCANP13611 SUMO1-205ENST00000409205 534 ntTSL 2 BASIC2.29□□□□□ -2.04
VCANP13611 RPL31P12-201ENST00000422587 358 ntBASIC2.29□□□□□ -2.04
VCANP13611 AL590399.6-201ENST00000446396 307 ntBASIC2.29□□□□□ -2.04
VCANP13611 SNORD13-201ENST00000459299 104 ntBASIC2.29□□□□□ -2.04
VCANP13611 AC068339.2-201ENST00000534395 618 ntBASIC2.29□□□□□ -2.04
VCANP13611 AL078603.1-201ENST00000603824 313 ntBASIC2.29□□□□□ -2.04
VCANP13611 EPHA7-202ENST00000369303 6588 ntAPPRIS P1 TSL 1 (best) BASIC2.29□□□□□ -2.04
VCANP13611 TTBK2-201ENST00000267890 10905 ntAPPRIS P2 TSL 5 BASIC2.29□□□□□ -2.04
VCANP13611 IL1RAPL2-201ENST00000344799 1290 ntTSL 5 BASIC2.29□□□□□ -2.04
VCANP13611 Y_RNA.36-201ENST00000362602 112 ntBASIC2.29□□□□□ -2.04
VCANP13611 EIF5P1-201ENST00000400019 1231 ntBASIC2.29□□□□□ -2.04
VCANP13611 AC105402.2-201ENST00000438503 358 ntBASIC2.29□□□□□ -2.04
VCANP13611 LINC00971-203ENST00000491849 452 ntTSL 3 BASIC2.29□□□□□ -2.04
VCANP13611 AC022960.1-201ENST00000582269 348 ntTSL 3 BASIC2.29□□□□□ -2.04
VCANP13611 PRKG1-205ENST00000401604 5922 ntTSL 5 BASIC2.29□□□□□ -2.04
VCANP13611 EXOC5P1-201ENST00000510543 1969 ntBASIC2.29□□□□□ -2.04
VCANP13611 AC016717.2-201ENST00000609089 5141 ntBASIC2.28□□□□□ -2.04
VCANP13611 ADGRL3-215ENST00000512091 12636 ntTSL 1 (best) BASIC2.28□□□□□ -2.04
VCANP13611 SNORA40.18-201ENST00000391200 128 ntBASIC2.28□□□□□ -2.04
VCANP13611 SETP15-201ENST00000412724 337 ntBASIC2.28□□□□□ -2.04
VCANP13611 AC133106.1-201ENST00000419029 397 ntTSL 3 BASIC2.28□□□□□ -2.04
VCANP13611 LINC02497-201ENST00000515292 507 ntTSL 3 BASIC2.28□□□□□ -2.04
VCANP13611 AC007686.2-201ENST00000554043 469 ntTSL 2 BASIC2.28□□□□□ -2.04
VCANP13611 AC008121.2-201ENST00000614647 523 ntBASIC2.28□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 100.2 ms