Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 SUGT1P1-201ENST00000379514 476 ntBASIC3.4□□□□□ -1.87
SDC3O75056 RNU6-224P-201ENST00000384055 107 ntBASIC3.4□□□□□ -1.87
SDC3O75056 U3.19-201ENST00000390893 196 ntBASIC3.4□□□□□ -1.87
SDC3O75056 KCNJ16-203ENST00000392671 3981 ntAPPRIS P1 TSL 2 BASIC3.4□□□□□ -1.87
SDC3O75056 BPIFC-202ENST00000397450 458 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
SDC3O75056 HSPE1P8-201ENST00000406997 288 ntBASIC3.4□□□□□ -1.87
SDC3O75056 MTHFD2P2-201ENST00000407725 247 ntBASIC3.4□□□□□ -1.87
SDC3O75056 RN7SKP285-201ENST00000410137 318 ntBASIC3.4□□□□□ -1.87
SDC3O75056 AC017079.2-201ENST00000416102 485 ntBASIC3.4□□□□□ -1.87
SDC3O75056 FNDC3CP-201ENST00000420795 1155 ntBASIC3.4□□□□□ -1.87
SDC3O75056 LINC01389-201ENST00000420876 483 ntTSL 3 BASIC3.4□□□□□ -1.87
SDC3O75056 AC013402.2-201ENST00000424257 437 ntTSL 3 BASIC3.4□□□□□ -1.87
SDC3O75056 AC023469.2-201ENST00000425983 657 ntTSL 5 BASIC3.4□□□□□ -1.87
SDC3O75056 MTCO1P3-201ENST00000429327 192 ntBASIC3.4□□□□□ -1.87
SDC3O75056 C21orf91-OT1-202ENST00000430815 717 ntTSL 5 BASIC3.4□□□□□ -1.87
SDC3O75056 MRPS18BP2-201ENST00000434310 759 ntBASIC3.4□□□□□ -1.87
SDC3O75056 GTF2IP7-202ENST00000436677 309 ntBASIC3.4□□□□□ -1.87
SDC3O75056 AC127537.2-201ENST00000439258 465 ntBASIC3.4□□□□□ -1.87
SDC3O75056 LINC01004-201ENST00000445184 686 ntTSL 5 BASIC3.4□□□□□ -1.87
SDC3O75056 AC002383.1-201ENST00000448260 671 ntTSL 5 BASIC3.4□□□□□ -1.87
SDC3O75056 HMGB3P8-201ENST00000449709 577 ntBASIC3.4□□□□□ -1.87
SDC3O75056 HMGB1P15-201ENST00000453854 435 ntBASIC3.4□□□□□ -1.87
SDC3O75056 DNAJC19P1-201ENST00000455312 319 ntBASIC3.4□□□□□ -1.87
SDC3O75056 MTCO3P2-201ENST00000457365 171 ntBASIC3.4□□□□□ -1.87
SDC3O75056 snoU109.3-201ENST00000459477 145 ntBASIC3.4□□□□□ -1.87
SDC3O75056 AC092919.1-201ENST00000467896 229 ntTSL 2 BASIC3.4□□□□□ -1.87
SDC3O75056 AC078785.3-201ENST00000476607 425 ntBASIC3.4□□□□□ -1.87
SDC3O75056 TIPARP-AS1-202ENST00000478005 554 ntTSL 4 BASIC3.4□□□□□ -1.87
SDC3O75056 KLRA1P-201ENST00000503499 986 ntBASIC3.4□□□□□ -1.87
SDC3O75056 PRELID3BP6-201ENST00000503839 571 ntBASIC3.4□□□□□ -1.87
SDC3O75056 HMGB1P22-201ENST00000505315 124 ntBASIC3.4□□□□□ -1.87
SDC3O75056 PAIP2-205ENST00000510080 858 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
SDC3O75056 MTCYBP37-201ENST00000510642 1133 ntBASIC3.4□□□□□ -1.87
SDC3O75056 AC091163.3-201ENST00000518269 1144 ntBASIC3.4□□□□□ -1.87
SDC3O75056 AP001317.1-201ENST00000531194 960 ntBASIC3.4□□□□□ -1.87
SDC3O75056 UBE2NP1-201ENST00000545592 458 ntBASIC3.4□□□□□ -1.87
SDC3O75056 AC063947.1-201ENST00000549036 557 ntTSL 4 BASIC3.4□□□□□ -1.87
SDC3O75056 SYF2P1-201ENST00000550658 413 ntBASIC3.4□□□□□ -1.87
SDC3O75056 MTCYBP27-201ENST00000555160 670 ntBASIC3.4□□□□□ -1.87
SDC3O75056 AC009019.1-202ENST00000568410 405 ntTSL 3 BASIC3.4□□□□□ -1.87
SDC3O75056 AC091588.1-201ENST00000578504 359 ntTSL 3 BASIC3.4□□□□□ -1.87
SDC3O75056 LINC01255-206ENST00000591431 441 ntTSL 5 BASIC3.4□□□□□ -1.87
SDC3O75056 AL606834.2-201ENST00000602954 668 ntBASIC3.4□□□□□ -1.87
SDC3O75056 AL445435.1-201ENST00000604232 665 ntBASIC3.4□□□□□ -1.87
SDC3O75056 ACTR3BP1-201ENST00000605584 1247 ntBASIC3.4□□□□□ -1.87
SDC3O75056 AC006963.1-201ENST00000624003 1052 ntBASIC3.4□□□□□ -1.87
SDC3O75056 OR1S1-201ENST00000624470 978 ntBASIC3.4□□□□□ -1.87
SDC3O75056 CGA-204ENST00000627148 1010 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
SDC3O75056 LINC02246-205ENST00000627623 417 ntTSL 5 BASIC3.4□□□□□ -1.87
SDC3O75056 MCF2-202ENST00000370573 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC3.4□□□□□ -1.87
SDC3O75056 AL049830.3-201ENST00000555108 1991 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
SDC3O75056 SYT14-204ENST00000472886 2966 ntAPPRIS P3 TSL 1 (best) BASIC3.39□□□□□ -1.87
SDC3O75056 AL365361.1-201ENST00000566942 3481 ntBASIC3.39□□□□□ -1.87
SDC3O75056 BLM-208ENST00000560509 3966 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
SDC3O75056 AC019117.3-201ENST00000637807 3523 ntAPPRIS P1 TSL 5 BASIC3.39□□□□□ -1.87
SDC3O75056 ZNF83-201ENST00000301096 2599 ntAPPRIS P1 TSL 3 BASIC3.39□□□□□ -1.87
SDC3O75056 RNU6-1249P-201ENST00000363237 111 ntBASIC3.39□□□□□ -1.87
SDC3O75056 RNU6-1066P-201ENST00000363573 105 ntBASIC3.39□□□□□ -1.87
SDC3O75056 MIR634-201ENST00000385208 97 ntBASIC3.39□□□□□ -1.87
SDC3O75056 EI24P2-201ENST00000397776 1076 ntBASIC3.39□□□□□ -1.87
SDC3O75056 AC096664.2-201ENST00000411843 406 ntBASIC3.39□□□□□ -1.87
SDC3O75056 AL133384.1-201ENST00000412744 351 ntBASIC3.39□□□□□ -1.87
SDC3O75056 RAD23BP2-201ENST00000416003 1207 ntBASIC3.39□□□□□ -1.87
SDC3O75056 MTCO3P12-201ENST00000416718 547 ntBASIC3.39□□□□□ -1.87
SDC3O75056 AL391839.1-201ENST00000417447 265 ntTSL 2 BASIC3.39□□□□□ -1.87
SDC3O75056 BOLA3P4-201ENST00000418151 400 ntBASIC3.39□□□□□ -1.87
SDC3O75056 AC092634.6-201ENST00000418558 192 ntBASIC3.39□□□□□ -1.87
SDC3O75056 AC007349.1-201ENST00000419326 587 ntTSL 4 BASIC3.39□□□□□ -1.87
SDC3O75056 AL034347.1-201ENST00000420766 835 ntTSL 3 BASIC3.39□□□□□ -1.87
SDC3O75056 LINC02526-201ENST00000424162 419 ntTSL 2 BASIC3.39□□□□□ -1.87
SDC3O75056 RPL7P44-201ENST00000424827 742 ntBASIC3.39□□□□□ -1.87
SDC3O75056 OSTCP5-201ENST00000425293 453 ntBASIC3.39□□□□□ -1.87
SDC3O75056 AC006548.1-201ENST00000427470 102 ntBASIC3.39□□□□□ -1.87
SDC3O75056 OFD1P12Y-201ENST00000427963 1207 ntBASIC3.39□□□□□ -1.87
SDC3O75056 AL512649.1-201ENST00000428997 581 ntBASIC3.39□□□□□ -1.87
SDC3O75056 OFD1P13Y-201ENST00000431179 1232 ntBASIC3.39□□□□□ -1.87
SDC3O75056 AC026167.1-201ENST00000435651 299 ntTSL 3 BASIC3.39□□□□□ -1.87
SDC3O75056 SKP1P1-201ENST00000438081 489 ntBASIC3.39□□□□□ -1.87
SDC3O75056 AC092393.1-201ENST00000439625 742 ntBASIC3.39□□□□□ -1.87
SDC3O75056 AC012070.1-201ENST00000442062 427 ntTSL 3 BASIC3.39□□□□□ -1.87
SDC3O75056 AL034418.1-201ENST00000448675 860 ntBASIC3.39□□□□□ -1.87
SDC3O75056 MIR1302-2HG-201ENST00000469289 535 ntTSL 5 BASIC3.39□□□□□ -1.87
SDC3O75056 AC069528.1-202ENST00000482888 637 ntBASIC3.39□□□□□ -1.87
SDC3O75056 WDR78-207ENST00000488333 613 ntTSL 3 BASIC3.39□□□□□ -1.87
SDC3O75056 RPL7P23-201ENST00000493874 747 ntBASIC3.39□□□□□ -1.87
SDC3O75056 AC084024.2-201ENST00000503480 791 ntBASIC3.39□□□□□ -1.87
SDC3O75056 AC004062.1-201ENST00000509926 645 ntBASIC3.39□□□□□ -1.87
SDC3O75056 MTCO2P32-201ENST00000514865 403 ntBASIC3.39□□□□□ -1.87
SDC3O75056 FBXO3-AS1-202ENST00000533046 386 ntTSL 3 BASIC3.39□□□□□ -1.87
SDC3O75056 AL121603.1-201ENST00000553815 142 ntBASIC3.39□□□□□ -1.87
SDC3O75056 AC066613.1-202ENST00000560727 630 ntTSL 5 BASIC3.39□□□□□ -1.87
SDC3O75056 AC138305.2-201ENST00000561595 556 ntTSL 4 BASIC3.39□□□□□ -1.87
SDC3O75056 SULT1C2P1-202ENST00000562418 459 ntBASIC3.39□□□□□ -1.87
SDC3O75056 MIR5708-201ENST00000579723 85 ntBASIC3.39□□□□□ -1.87
SDC3O75056 AC025682.1-201ENST00000582389 437 ntTSL 5 BASIC3.39□□□□□ -1.87
SDC3O75056 AC011518.1-202ENST00000592668 407 ntTSL 5 BASIC3.39□□□□□ -1.87
SDC3O75056 AC012493.2-201ENST00000595083 291 ntBASIC3.39□□□□□ -1.87
SDC3O75056 AC090948.3-201ENST00000606713 551 ntTSL 4 BASIC3.39□□□□□ -1.87
SDC3O75056 AC009237.15-201ENST00000610252 501 ntBASIC3.39□□□□□ -1.87
SDC3O75056 ABCC9-206ENST00000621589 450 ntTSL 5 BASIC3.39□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 80.2 ms