Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 CYCSP51-201ENST00000443545 318 ntBASIC5.86□□□□□ -1.47
USP3Q9Y6I4 AC008571.1-201ENST00000467232 300 ntBASIC5.86□□□□□ -1.47
USP3Q9Y6I4 AC022034.3-201ENST00000471393 478 ntBASIC5.86□□□□□ -1.47
USP3Q9Y6I4 AC103987.1-201ENST00000473394 348 ntBASIC5.86□□□□□ -1.47
USP3Q9Y6I4 RPL30P11-201ENST00000495304 339 ntBASIC5.86□□□□□ -1.47
USP3Q9Y6I4 AC021146.3-201ENST00000511911 260 ntBASIC5.86□□□□□ -1.47
USP3Q9Y6I4 FTH1P9-201ENST00000513251 355 ntBASIC5.86□□□□□ -1.47
USP3Q9Y6I4 RFPL4AP5-201ENST00000514977 504 ntBASIC5.86□□□□□ -1.47
USP3Q9Y6I4 AC069120.1-201ENST00000521623 379 ntTSL 3 BASIC5.86□□□□□ -1.47
USP3Q9Y6I4 SULT1C2P2-201ENST00000562517 294 ntBASIC5.86□□□□□ -1.47
USP3Q9Y6I4 AC027130.1-201ENST00000564490 686 ntTSL 2 BASIC5.86□□□□□ -1.47
USP3Q9Y6I4 AC009019.1-203ENST00000568603 515 ntTSL 5 BASIC5.86□□□□□ -1.47
USP3Q9Y6I4 MIR3176-201ENST00000582210 90 ntBASIC5.86□□□□□ -1.47
USP3Q9Y6I4 AC012616.1-201ENST00000600294 197 ntBASIC5.86□□□□□ -1.47
USP3Q9Y6I4 AL589765.7-201ENST00000601684 629 ntTSL 3 BASIC5.86□□□□□ -1.47
USP3Q9Y6I4 MIR6886-201ENST00000619864 61 ntBASIC5.86□□□□□ -1.47
USP3Q9Y6I4 MPP6-209ENST00000625307 126 ntTSL 5 BASIC5.86□□□□□ -1.47
USP3Q9Y6I4 AC079776.5-201ENST00000641920 211 ntBASIC5.86□□□□□ -1.47
USP3Q9Y6I4 AP005212.5-201ENST00000577614 3505 ntTSL 5 BASIC5.86□□□□□ -1.47
USP3Q9Y6I4 CDH13-209ENST00000567109 8042 ntAPPRIS ALT2 TSL 1 (best) BASIC5.86□□□□□ -1.47
USP3Q9Y6I4 TLR5-205ENST00000540964 4088 ntAPPRIS P1 TSL 5 BASIC5.86□□□□□ -1.47
USP3Q9Y6I4 AC087516.1-201ENST00000561236 2428 ntBASIC5.86□□□□□ -1.47
USP3Q9Y6I4 OR2AT4-202ENST00000641504 8661 ntAPPRIS P1 BASIC5.86□□□□□ -1.47
USP3Q9Y6I4 RAD51AP1-202ENST00000352618 2113 ntAPPRIS P3 TSL 1 (best) BASIC5.86□□□□□ -1.47
USP3Q9Y6I4 TPTE2P2-202ENST00000605924 2113 ntTSL 5 BASIC5.86□□□□□ -1.47
USP3Q9Y6I4 AFM-201ENST00000226355 2059 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
USP3Q9Y6I4 ERP27-201ENST00000266397 2096 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
USP3Q9Y6I4 ZBTB25-201ENST00000394715 2094 ntAPPRIS P1 TSL 2 BASIC5.86□□□□□ -1.47
USP3Q9Y6I4 SERPINB7-207ENST00000546027 1951 ntAPPRIS P1 TSL 2 BASIC5.86□□□□□ -1.47
USP3Q9Y6I4 AL442128.2-201ENST00000620246 1824 ntBASIC5.85□□□□□ -1.47
USP3Q9Y6I4 LRRC49-204ENST00000544974 6605 ntTSL 2 BASIC5.85□□□□□ -1.47
USP3Q9Y6I4 SETDB2-205ENST00000611815 5313 ntAPPRIS ALT2 TSL 5 BASIC5.85□□□□□ -1.47
USP3Q9Y6I4 SLC13A1-201ENST00000194130 3815 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
USP3Q9Y6I4 CLCN3-204ENST00000504131 5592 ntTSL 5 BASIC5.85□□□□□ -1.47
USP3Q9Y6I4 MFSD8-201ENST00000296468 4516 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
USP3Q9Y6I4 AL353751.1-201ENST00000354541 495 ntTSL 3 BASIC5.85□□□□□ -1.47
USP3Q9Y6I4 RNA5SP514-201ENST00000363717 111 ntBASIC5.85□□□□□ -1.47
USP3Q9Y6I4 RNU6-209P-201ENST00000384118 107 ntBASIC5.85□□□□□ -1.47
USP3Q9Y6I4 RNU6-434P-201ENST00000384376 107 ntBASIC5.85□□□□□ -1.47
USP3Q9Y6I4 RNU6-754P-201ENST00000391166 107 ntBASIC5.85□□□□□ -1.47
USP3Q9Y6I4 OR3A2-201ENST00000408891 1076 ntBASIC5.85□□□□□ -1.47
USP3Q9Y6I4 RNU2-64P-201ENST00000411315 191 ntBASIC5.85□□□□□ -1.47
USP3Q9Y6I4 TRAPPC2P5-201ENST00000426293 308 ntBASIC5.85□□□□□ -1.47
USP3Q9Y6I4 TMEM183AP1-205ENST00000432739 290 ntBASIC5.85□□□□□ -1.47
USP3Q9Y6I4 AL590399.4-201ENST00000436561 601 ntBASIC5.85□□□□□ -1.47
USP3Q9Y6I4 AC127537.2-201ENST00000439258 465 ntBASIC5.85□□□□□ -1.47
USP3Q9Y6I4 AL442224.1-201ENST00000443771 391 ntTSL 2 BASIC5.85□□□□□ -1.47
USP3Q9Y6I4 RPS24P6-201ENST00000452670 400 ntBASIC5.85□□□□□ -1.47
USP3Q9Y6I4 HMGB3P30-201ENST00000457863 606 ntBASIC5.85□□□□□ -1.47
USP3Q9Y6I4 SNORD5.1-201ENST00000458800 75 ntBASIC5.85□□□□□ -1.47
USP3Q9Y6I4 SNORD125-201ENST00000459538 96 ntBASIC5.85□□□□□ -1.47
USP3Q9Y6I4 RPS20P21-201ENST00000466859 343 ntBASIC5.85□□□□□ -1.47
USP3Q9Y6I4 RN7SL284P-201ENST00000498823 275 ntBASIC5.85□□□□□ -1.47
USP3Q9Y6I4 FTH1P24-201ENST00000503502 462 ntBASIC5.85□□□□□ -1.47
USP3Q9Y6I4 LINC00492-201ENST00000504436 593 ntTSL 3 BASIC5.85□□□□□ -1.47
USP3Q9Y6I4 MGC32805-203ENST00000506053 652 ntTSL 3 BASIC5.85□□□□□ -1.47
USP3Q9Y6I4 MDM4-213ENST00000507825 481 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
USP3Q9Y6I4 AC107396.1-201ENST00000509641 735 ntTSL 5 BASIC5.85□□□□□ -1.47
USP3Q9Y6I4 RNU6-408P-201ENST00000515910 100 ntBASIC5.85□□□□□ -1.47
USP3Q9Y6I4 snoU109.6-201ENST00000516831 118 ntBASIC5.85□□□□□ -1.47
USP3Q9Y6I4 PKIA-203ENST00000518467 588 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
USP3Q9Y6I4 IL7-206ENST00000520269 456 ntTSL 3 BASIC5.85□□□□□ -1.47
USP3Q9Y6I4 APPL2-203ENST00000546731 684 ntTSL 2 BASIC5.85□□□□□ -1.47
USP3Q9Y6I4 AL358913.1-201ENST00000554342 121 ntBASIC5.85□□□□□ -1.47
USP3Q9Y6I4 AC090409.2-202ENST00000585706 604 ntTSL 5 BASIC5.85□□□□□ -1.47
USP3Q9Y6I4 AC008521.1-201ENST00000587471 187 ntBASIC5.85□□□□□ -1.47
USP3Q9Y6I4 AC105265.3-202ENST00000610188 459 ntTSL 5 BASIC5.85□□□□□ -1.47
USP3Q9Y6I4 AL021879.1-201ENST00000611756 288 ntBASIC5.85□□□□□ -1.47
USP3Q9Y6I4 AC132068.1-201ENST00000623805 459 ntBASIC5.85□□□□□ -1.47
USP3Q9Y6I4 AL732372.2-225ENST00000642124 456 ntBASIC5.85□□□□□ -1.47
USP3Q9Y6I4 MEF2C-202ENST00000424173 6336 ntAPPRIS P3 TSL 1 (best) BASIC5.85□□□□□ -1.47
USP3Q9Y6I4 IKZF2-201ENST00000342002 3747 ntAPPRIS ALT2 TSL 1 (best) BASIC5.85□□□□□ -1.47
USP3Q9Y6I4 AL050403.1-201ENST00000448859 2006 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
USP3Q9Y6I4 ZNF780A-204ENST00000455521 3600 ntAPPRIS ALT2 TSL 5 BASIC5.85□□□□□ -1.47
USP3Q9Y6I4 PGBD4-201ENST00000397766 6612 ntAPPRIS P1 BASIC5.85□□□□□ -1.47
USP3Q9Y6I4 MAGI2-222ENST00000636039 5671 ntTSL 5 BASIC5.85□□□□□ -1.47
USP3Q9Y6I4 PREPL-216ENST00000541738 6049 ntTSL 2 BASIC5.85□□□□□ -1.47
USP3Q9Y6I4 DOCK9-208ENST00000448493 7887 ntAPPRIS ALT2 TSL 5 BASIC5.85□□□□□ -1.47
USP3Q9Y6I4 KATNA1-202ENST00000335647 1684 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
USP3Q9Y6I4 NEGR1-202ENST00000357731 12811 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
USP3Q9Y6I4 NELL2-201ENST00000333837 2943 ntTSL 2 BASIC5.85□□□□□ -1.47
USP3Q9Y6I4 FCHO2-207ENST00000512348 2700 ntTSL 2 BASIC5.84□□□□□ -1.47
USP3Q9Y6I4 RWDD2A-201ENST00000369724 3744 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
USP3Q9Y6I4 OTUD4-202ENST00000454497 7069 ntTSL 2 BASIC5.84□□□□□ -1.47
USP3Q9Y6I4 PTPN12-206ENST00000435495 2526 ntTSL 2 BASIC5.84□□□□□ -1.47
USP3Q9Y6I4 AC108751.5-201ENST00000492880 1336 ntBASIC5.84□□□□□ -1.47
USP3Q9Y6I4 AL133284.1-201ENST00000423715 4996 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
USP3Q9Y6I4 NUP107-202ENST00000378905 2859 ntTSL 5 BASIC5.84□□□□□ -1.47
USP3Q9Y6I4 CNGA1-202ENST00000402813 2867 ntAPPRIS ALT2 TSL 1 (best) BASIC5.84□□□□□ -1.47
USP3Q9Y6I4 Y_RNA.39-201ENST00000362620 98 ntBASIC5.84□□□□□ -1.47
USP3Q9Y6I4 RN7SKP160-201ENST00000363804 340 ntBASIC5.84□□□□□ -1.47
USP3Q9Y6I4 RNA5SP234-201ENST00000363916 119 ntBASIC5.84□□□□□ -1.47
USP3Q9Y6I4 Y_RNA.288-201ENST00000364854 92 ntBASIC5.84□□□□□ -1.47
USP3Q9Y6I4 RNU4-2-201ENST00000365668 141 ntBASIC5.84□□□□□ -1.47
USP3Q9Y6I4 CDC123-202ENST00000378900 933 ntTSL 5 BASIC5.84□□□□□ -1.47
USP3Q9Y6I4 MIR551A-201ENST00000385042 96 ntBASIC5.84□□□□□ -1.47
USP3Q9Y6I4 Z99755.1-201ENST00000414048 380 ntBASIC5.84□□□□□ -1.47
USP3Q9Y6I4 FAR2P4-202ENST00000425399 584 ntBASIC5.84□□□□□ -1.47
USP3Q9Y6I4 AL353693.1-201ENST00000429567 442 ntTSL 3 BASIC5.84□□□□□ -1.47
USP3Q9Y6I4 KRTAP8-2P-201ENST00000440620 186 ntBASIC5.84□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 111.3 ms