Protein–RNA interactions for Protein: Q9Y3E7

CHMP3, Charged multivesicular body protein 3, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3Q9Y3E7 RN7SKP113-201ENST00000363891 295 ntBASIC6.34□□□□□ -1.39
CHMP3Q9Y3E7 RNU6-39P-201ENST00000384344 107 ntBASIC6.34□□□□□ -1.39
CHMP3Q9Y3E7 RNU6-1105P-201ENST00000384774 107 ntBASIC6.34□□□□□ -1.39
CHMP3Q9Y3E7 Y_RNA.605-201ENST00000410577 105 ntBASIC6.34□□□□□ -1.39
CHMP3Q9Y3E7 OR2AM1P-201ENST00000422137 422 ntBASIC6.34□□□□□ -1.39
CHMP3Q9Y3E7 OR4K11P-201ENST00000431829 904 ntBASIC6.34□□□□□ -1.39
CHMP3Q9Y3E7 RPS3AP52-201ENST00000435639 297 ntBASIC6.34□□□□□ -1.39
CHMP3Q9Y3E7 AC055855.1-201ENST00000489563 579 ntBASIC6.34□□□□□ -1.39
CHMP3Q9Y3E7 AC111194.2-201ENST00000511222 455 ntTSL 5 BASIC6.34□□□□□ -1.39
CHMP3Q9Y3E7 AC114797.1-201ENST00000514003 728 ntBASIC6.34□□□□□ -1.39
CHMP3Q9Y3E7 FAM92A-209ENST00000519679 538 ntTSL 4 BASIC6.34□□□□□ -1.39
CHMP3Q9Y3E7 AC124290.1-202ENST00000523342 387 ntTSL 3 BASIC6.34□□□□□ -1.39
CHMP3Q9Y3E7 AL355097.1-201ENST00000555889 539 ntTSL 4 BASIC6.34□□□□□ -1.39
CHMP3Q9Y3E7 OR4K8P-201ENST00000578842 1048 ntBASIC6.34□□□□□ -1.39
CHMP3Q9Y3E7 PPIAL4F-202ENST00000581138 660 ntAPPRIS P1 BASIC6.34□□□□□ -1.39
CHMP3Q9Y3E7 PPIAL4E-201ENST00000581164 785 ntAPPRIS P1 BASIC6.34□□□□□ -1.39
CHMP3Q9Y3E7 AC092364.1-202ENST00000593824 565 ntTSL 4 BASIC6.34□□□□□ -1.39
CHMP3Q9Y3E7 GMFG-202ENST00000594700 397 ntTSL 2 BASIC6.34□□□□□ -1.39
CHMP3Q9Y3E7 PPP3CB-AS1-206ENST00000595935 675 ntTSL 5 BASIC6.34□□□□□ -1.39
CHMP3Q9Y3E7 AC012313.1-202ENST00000597309 423 ntTSL 3 BASIC6.34□□□□□ -1.39
CHMP3Q9Y3E7 AP005432.2-201ENST00000608162 586 ntBASIC6.34□□□□□ -1.39
CHMP3Q9Y3E7 AC019193.3-201ENST00000609144 554 ntBASIC6.34□□□□□ -1.39
CHMP3Q9Y3E7 AL589935.1-202ENST00000612512 393 ntTSL 5 BASIC6.34□□□□□ -1.39
CHMP3Q9Y3E7 uc_338.15-201ENST00000615470 191 ntBASIC6.34□□□□□ -1.39
CHMP3Q9Y3E7 AC000123.2-201ENST00000623124 461 ntBASIC6.34□□□□□ -1.39
CHMP3Q9Y3E7 AC091953.3-201ENST00000623220 236 ntBASIC6.34□□□□□ -1.39
CHMP3Q9Y3E7 CR392039.4-201ENST00000624968 501 ntBASIC6.34□□□□□ -1.39
CHMP3Q9Y3E7 VSNL1-203ENST00000406397 2725 ntAPPRIS P1 TSL 5 BASIC6.34□□□□□ -1.39
CHMP3Q9Y3E7 ERVFRD-3-201ENST00000578561 1617 ntBASIC6.34□□□□□ -1.39
CHMP3Q9Y3E7 CD96-203ENST00000438817 1565 ntTSL 1 (best) BASIC6.34□□□□□ -1.39
CHMP3Q9Y3E7 DNAH14-208ENST00000430092 13763 ntAPPRIS P1 TSL 5 BASIC6.34□□□□□ -1.39
CHMP3Q9Y3E7 RNMT-203ENST00000543302 1849 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.4
CHMP3Q9Y3E7 SPART-202ENST00000438666 4789 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.4
CHMP3Q9Y3E7 FGF13-202ENST00000315930 19519 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.4
CHMP3Q9Y3E7 AC097461.1-201ENST00000568928 2821 ntBASIC6.33□□□□□ -1.4
CHMP3Q9Y3E7 AC069228.1-201ENST00000546936 1615 ntTSL 3 BASIC6.33□□□□□ -1.4
CHMP3Q9Y3E7 HDAC9-204ENST00000406451 9705 ntAPPRIS ALT1 TSL 1 (best) BASIC6.33□□□□□ -1.4
CHMP3Q9Y3E7 TANK-205ENST00000405852 2155 ntTSL 5 BASIC6.33□□□□□ -1.4
CHMP3Q9Y3E7 SYCP1-209ENST00000613524 3034 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
CHMP3Q9Y3E7 PLCH1-201ENST00000334686 6128 ntAPPRIS P3 TSL 1 (best) BASIC6.33□□□□□ -1.4
CHMP3Q9Y3E7 RNU6-28P-201ENST00000362378 107 ntBASIC6.33□□□□□ -1.4
CHMP3Q9Y3E7 Y_RNA.373-201ENST00000365600 103 ntBASIC6.33□□□□□ -1.4
CHMP3Q9Y3E7 TRAV12-2-201ENST00000390437 445 ntAPPRIS P1 BASIC6.33□□□□□ -1.4
CHMP3Q9Y3E7 RNA5SP241-201ENST00000391326 114 ntBASIC6.33□□□□□ -1.4
CHMP3Q9Y3E7 AL078599.1-201ENST00000402075 293 ntBASIC6.33□□□□□ -1.4
CHMP3Q9Y3E7 RNU4-26P-201ENST00000410270 107 ntBASIC6.33□□□□□ -1.4
CHMP3Q9Y3E7 RNU6-193P-201ENST00000410977 107 ntBASIC6.33□□□□□ -1.4
CHMP3Q9Y3E7 AC008154.2-201ENST00000420268 414 ntTSL 3 BASIC6.33□□□□□ -1.4
CHMP3Q9Y3E7 LINC01389-201ENST00000420876 483 ntTSL 3 BASIC6.33□□□□□ -1.4
CHMP3Q9Y3E7 AL360227.1-201ENST00000425364 433 ntTSL 3 BASIC6.33□□□□□ -1.4
CHMP3Q9Y3E7 AC006466.1-201ENST00000438721 289 ntBASIC6.33□□□□□ -1.4
CHMP3Q9Y3E7 AL138767.2-201ENST00000446794 168 ntTSL 3 BASIC6.33□□□□□ -1.4
CHMP3Q9Y3E7 KNOP1P3-201ENST00000446933 426 ntBASIC6.33□□□□□ -1.4
CHMP3Q9Y3E7 AL591504.1-201ENST00000450681 414 ntTSL 3 BASIC6.33□□□□□ -1.4
CHMP3Q9Y3E7 AC091180.1-201ENST00000462104 372 ntBASIC6.33□□□□□ -1.4
CHMP3Q9Y3E7 RPL5P22-201ENST00000480199 884 ntBASIC6.33□□□□□ -1.4
CHMP3Q9Y3E7 RPL21P99-201ENST00000480369 423 ntBASIC6.33□□□□□ -1.4
CHMP3Q9Y3E7 CDV3-208ENST00000511392 554 ntTSL 5 BASIC6.33□□□□□ -1.4
CHMP3Q9Y3E7 RNU4ATAC8P-201ENST00000516196 109 ntBASIC6.33□□□□□ -1.4
CHMP3Q9Y3E7 RNA5SP43-201ENST00000516559 110 ntBASIC6.33□□□□□ -1.4
CHMP3Q9Y3E7 AC100801.1-202ENST00000518266 371 ntTSL 3 BASIC6.33□□□□□ -1.4
CHMP3Q9Y3E7 AC110275.1-201ENST00000534420 623 ntAPPRIS P1 TSL 4 BASIC6.33□□□□□ -1.4
CHMP3Q9Y3E7 LINC02442-201ENST00000537732 343 ntTSL 3 BASIC6.33□□□□□ -1.4
CHMP3Q9Y3E7 AC044873.1-201ENST00000580487 399 ntTSL 3 BASIC6.33□□□□□ -1.4
CHMP3Q9Y3E7 MIR4480-201ENST00000582492 71 ntBASIC6.33□□□□□ -1.4
CHMP3Q9Y3E7 GLUD1P4-201ENST00000590914 418 ntBASIC6.33□□□□□ -1.4
CHMP3Q9Y3E7 SLC14A2-AS1-204ENST00000592899 359 ntTSL 3 BASIC6.33□□□□□ -1.4
CHMP3Q9Y3E7 LINC01905-206ENST00000593180 524 ntTSL 2 BASIC6.33□□□□□ -1.4
CHMP3Q9Y3E7 APOOP1-201ENST00000604695 592 ntBASIC6.33□□□□□ -1.4
CHMP3Q9Y3E7 AL121992.2-201ENST00000606262 256 ntBASIC6.33□□□□□ -1.4
CHMP3Q9Y3E7 AC022017.1-201ENST00000608793 559 ntTSL 4 BASIC6.33□□□□□ -1.4
CHMP3Q9Y3E7 AC087385.3-201ENST00000620477 187 ntBASIC6.33□□□□□ -1.4
CHMP3Q9Y3E7 HSPA8P14-201ENST00000552265 1805 ntBASIC6.33□□□□□ -1.4
CHMP3Q9Y3E7 GHR-210ENST00000615111 4814 ntAPPRIS P1 TSL 5 BASIC6.33□□□□□ -1.4
CHMP3Q9Y3E7 MYOT-202ENST00000421631 1474 ntTSL 2 BASIC6.33□□□□□ -1.4
CHMP3Q9Y3E7 ADH6-202ENST00000394897 3337 ntTSL 2 BASIC6.33□□□□□ -1.4
CHMP3Q9Y3E7 AC024337.2-201ENST00000616608 2797 ntTSL 5 BASIC6.33□□□□□ -1.4
CHMP3Q9Y3E7 GAS2L3-203ENST00000539410 2229 ntAPPRIS P1 TSL 2 BASIC6.33□□□□□ -1.4
CHMP3Q9Y3E7 NPSR1-AS1-205ENST00000436945 1406 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
CHMP3Q9Y3E7 NAP1L1-204ENST00000535020 1686 ntTSL 2 BASIC6.33□□□□□ -1.4
CHMP3Q9Y3E7 OXR1-201ENST00000297447 1944 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
CHMP3Q9Y3E7 NT5C3A-202ENST00000381626 1909 ntAPPRIS ALT1 TSL 5 BASIC6.33□□□□□ -1.4
CHMP3Q9Y3E7 DNA2-201ENST00000358410 4208 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
CHMP3Q9Y3E7 AC093671.1-201ENST00000624981 2929 ntBASIC6.32□□□□□ -1.4
CHMP3Q9Y3E7 IL1RAPL1-202ENST00000378993 3667 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
CHMP3Q9Y3E7 IREB2-201ENST00000258886 6354 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
CHMP3Q9Y3E7 RNF182-207ENST00000537663 3382 ntAPPRIS P1 TSL 4 BASIC6.32□□□□□ -1.4
CHMP3Q9Y3E7 IRAK1BP1-204ENST00000607739 1387 ntTSL 2 BASIC6.32□□□□□ -1.4
CHMP3Q9Y3E7 LINC02203-203ENST00000625989 1600 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
CHMP3Q9Y3E7 DNAH7-202ENST00000409063 1845 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
CHMP3Q9Y3E7 SRSF11-201ENST00000370949 3034 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
CHMP3Q9Y3E7 FAM216B-201ENST00000313851 3243 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
CHMP3Q9Y3E7 SDHC-202ENST00000367975 13566 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
CHMP3Q9Y3E7 FILIP1-201ENST00000237172 4580 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
CHMP3Q9Y3E7 RNU5E-8P-201ENST00000363502 116 ntBASIC6.32□□□□□ -1.4
CHMP3Q9Y3E7 RN7SKP44-201ENST00000363602 316 ntBASIC6.32□□□□□ -1.4
CHMP3Q9Y3E7 DEFB119-203ENST00000376321 457 ntAPPRIS P3 TSL 1 (best) BASIC6.32□□□□□ -1.4
CHMP3Q9Y3E7 SNORA2.3-201ENST00000383920 135 ntBASIC6.32□□□□□ -1.4
CHMP3Q9Y3E7 RNU6-1207P-201ENST00000384343 107 ntBASIC6.32□□□□□ -1.4
CHMP3Q9Y3E7 RNY4P36-201ENST00000391116 96 ntBASIC6.32□□□□□ -1.4
Retrieved 100 of 98,524 protein–RNA pairs in 92.9 ms