Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 AL157371.1-201ENST00000451910 394 ntTSL 3 BASIC5.23□□□□□ -1.57
HIF3AQ9Y2N7 AL133481.3-201ENST00000456546 333 ntTSL 3 BASIC5.23□□□□□ -1.57
HIF3AQ9Y2N7 AC117462.1-201ENST00000461186 554 ntTSL 4 BASIC5.23□□□□□ -1.57
HIF3AQ9Y2N7 PPIAP21-201ENST00000464473 501 ntBASIC5.23□□□□□ -1.57
HIF3AQ9Y2N7 RPL12P20-201ENST00000475538 479 ntBASIC5.23□□□□□ -1.57
HIF3AQ9Y2N7 UBA52P7-201ENST00000486088 380 ntBASIC5.23□□□□□ -1.57
HIF3AQ9Y2N7 RN7SL284P-201ENST00000498823 275 ntBASIC5.23□□□□□ -1.57
HIF3AQ9Y2N7 AC114801.2-201ENST00000503825 781 ntBASIC5.23□□□□□ -1.57
HIF3AQ9Y2N7 LINC02469-201ENST00000506460 741 ntTSL 3 BASIC5.23□□□□□ -1.57
HIF3AQ9Y2N7 HSD3BP3-201ENST00000514706 994 ntBASIC5.23□□□□□ -1.57
HIF3AQ9Y2N7 AC103726.2-201ENST00000523318 411 ntTSL 2 BASIC5.23□□□□□ -1.57
HIF3AQ9Y2N7 CARD16-203ENST00000525374 503 ntTSL 3 BASIC5.23□□□□□ -1.57
HIF3AQ9Y2N7 AP003396.4-201ENST00000527574 265 ntBASIC5.23□□□□□ -1.57
HIF3AQ9Y2N7 AC134511.1-201ENST00000535721 192 ntTSL 3 BASIC5.23□□□□□ -1.57
HIF3AQ9Y2N7 AL133271.1-201ENST00000538229 291 ntBASIC5.23□□□□□ -1.57
HIF3AQ9Y2N7 AC091544.7-201ENST00000554000 240 ntTSL 3 BASIC5.23□□□□□ -1.57
HIF3AQ9Y2N7 AC023510.1-201ENST00000555862 490 ntTSL 2 BASIC5.23□□□□□ -1.57
HIF3AQ9Y2N7 AC010325.1-202ENST00000562076 279 ntAPPRIS ALT2 TSL 1 (best) BASIC5.23□□□□□ -1.57
HIF3AQ9Y2N7 AC027130.1-201ENST00000564490 686 ntTSL 2 BASIC5.23□□□□□ -1.57
HIF3AQ9Y2N7 C16orf97-203ENST00000566314 281 ntTSL 3 BASIC5.23□□□□□ -1.57
HIF3AQ9Y2N7 AC090617.5-201ENST00000571815 528 ntTSL 3 BASIC5.23□□□□□ -1.57
HIF3AQ9Y2N7 MIR3128-201ENST00000581957 66 ntBASIC5.23□□□□□ -1.57
HIF3AQ9Y2N7 MIR99AHG-211ENST00000602323 475 ntTSL 5 BASIC5.23□□□□□ -1.57
HIF3AQ9Y2N7 LINC02343-201ENST00000605909 573 ntTSL 4 BASIC5.23□□□□□ -1.57
HIF3AQ9Y2N7 EAF1-AS1-211ENST00000610011 316 ntTSL 5 BASIC5.23□□□□□ -1.57
HIF3AQ9Y2N7 Z99755.2-201ENST00000610215 364 ntTSL 3 BASIC5.23□□□□□ -1.57
HIF3AQ9Y2N7 SNORA11.6-201ENST00000619030 128 ntBASIC5.23□□□□□ -1.57
HIF3AQ9Y2N7 AL445363.3-201ENST00000623080 671 ntBASIC5.23□□□□□ -1.57
HIF3AQ9Y2N7 AL353662.3-201ENST00000625131 237 ntBASIC5.23□□□□□ -1.57
HIF3AQ9Y2N7 LINC00969-332ENST00000630874 738 ntTSL 5 BASIC5.23□□□□□ -1.57
HIF3AQ9Y2N7 WISP3-211ENST00000639360 1026 ntTSL 5 BASIC5.23□□□□□ -1.57
HIF3AQ9Y2N7 ZNF615-201ENST00000376716 4048 ntAPPRIS P3 TSL 2 BASIC5.23□□□□□ -1.57
HIF3AQ9Y2N7 OTUD4-202ENST00000454497 7069 ntTSL 2 BASIC5.23□□□□□ -1.57
HIF3AQ9Y2N7 SOCS5P3-201ENST00000425115 1576 ntBASIC5.23□□□□□ -1.57
HIF3AQ9Y2N7 SLC35A1-201ENST00000369552 1851 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
HIF3AQ9Y2N7 RAPH1-207ENST00000423104 1860 ntAPPRIS ALT2 TSL 5 BASIC5.23□□□□□ -1.57
HIF3AQ9Y2N7 LINC01277-201ENST00000419957 2398 ntTSL 2 BASIC5.23□□□□□ -1.57
HIF3AQ9Y2N7 MAK-204ENST00000536370 3767 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
HIF3AQ9Y2N7 LINC01524-201ENST00000428009 4390 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
HIF3AQ9Y2N7 CARD6-201ENST00000254691 4221 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
HIF3AQ9Y2N7 SYTL2-204ENST00000389958 1943 ntTSL 2 BASIC5.23□□□□□ -1.57
HIF3AQ9Y2N7 ZNF85-201ENST00000300540 1531 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
HIF3AQ9Y2N7 TESPA1-203ENST00000524622 4188 ntAPPRIS ALT2 TSL 1 (best) BASIC5.23□□□□□ -1.57
HIF3AQ9Y2N7 DPP10-204ENST00000409163 3883 ntAPPRIS ALT2 TSL 2 BASIC5.23□□□□□ -1.57
HIF3AQ9Y2N7 ROR1-AS1-202ENST00000424995 2189 ntTSL 2 BASIC5.22□□□□□ -1.57
HIF3AQ9Y2N7 CLSPN-202ENST00000318121 4169 ntAPPRIS P3 TSL 1 (best) BASIC5.22□□□□□ -1.57
HIF3AQ9Y2N7 OR55B1P-203ENST00000641518 2602 ntBASIC5.22□□□□□ -1.57
HIF3AQ9Y2N7 AL161668.1-201ENST00000320322 358 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
HIF3AQ9Y2N7 RNU6-1078P-201ENST00000364522 103 ntBASIC5.22□□□□□ -1.57
HIF3AQ9Y2N7 RNU1-115P-201ENST00000365329 160 ntBASIC5.22□□□□□ -1.57
HIF3AQ9Y2N7 Y_RNA.350-201ENST00000365409 98 ntBASIC5.22□□□□□ -1.57
HIF3AQ9Y2N7 RNU6-306P-201ENST00000384617 107 ntBASIC5.22□□□□□ -1.57
HIF3AQ9Y2N7 TRDJ1-201ENST00000390473 51 ntAPPRIS P1 BASIC5.22□□□□□ -1.57
HIF3AQ9Y2N7 RNU6-550P-201ENST00000391057 101 ntBASIC5.22□□□□□ -1.57
HIF3AQ9Y2N7 RNU4-46P-201ENST00000410818 138 ntBASIC5.22□□□□□ -1.57
HIF3AQ9Y2N7 RNU6-603P-201ENST00000411403 107 ntBASIC5.22□□□□□ -1.57
HIF3AQ9Y2N7 AL133343.3-201ENST00000413983 469 ntTSL 2 BASIC5.22□□□□□ -1.57
HIF3AQ9Y2N7 RPL30P2-201ENST00000414021 291 ntBASIC5.22□□□□□ -1.57
HIF3AQ9Y2N7 BX682237.1-201ENST00000415016 335 ntBASIC5.22□□□□□ -1.57
HIF3AQ9Y2N7 GJA6P-201ENST00000415117 1042 ntBASIC5.22□□□□□ -1.57
HIF3AQ9Y2N7 AC133106.1-201ENST00000419029 397 ntTSL 3 BASIC5.22□□□□□ -1.57
HIF3AQ9Y2N7 MYCBP2-AS1-201ENST00000422231 519 ntTSL 3 BASIC5.22□□□□□ -1.57
HIF3AQ9Y2N7 RPL23AP38-201ENST00000423801 469 ntBASIC5.22□□□□□ -1.57
HIF3AQ9Y2N7 SDCBP-203ENST00000424270 1277 ntAPPRIS ALT1 TSL 2 BASIC5.22□□□□□ -1.57
HIF3AQ9Y2N7 RPS15AP10-201ENST00000432472 382 ntBASIC5.22□□□□□ -1.57
HIF3AQ9Y2N7 MTND5P15-201ENST00000434246 349 ntBASIC5.22□□□□□ -1.57
HIF3AQ9Y2N7 CYCSP12-201ENST00000437729 300 ntBASIC5.22□□□□□ -1.57
HIF3AQ9Y2N7 MED28P3-201ENST00000444288 531 ntBASIC5.22□□□□□ -1.57
HIF3AQ9Y2N7 HSFY6P-201ENST00000445573 403 ntBASIC5.22□□□□□ -1.57
HIF3AQ9Y2N7 TIMM8BP2-201ENST00000445940 251 ntBASIC5.22□□□□□ -1.57
HIF3AQ9Y2N7 RPL36AP13-201ENST00000457490 317 ntBASIC5.22□□□□□ -1.57
HIF3AQ9Y2N7 RNU6-1132P-201ENST00000459214 107 ntBASIC5.22□□□□□ -1.57
HIF3AQ9Y2N7 AC046136.1-201ENST00000459855 533 ntTSL 3 BASIC5.22□□□□□ -1.57
HIF3AQ9Y2N7 AC098847.1-201ENST00000473094 348 ntBASIC5.22□□□□□ -1.57
HIF3AQ9Y2N7 SNRPCP3-201ENST00000474888 476 ntBASIC5.22□□□□□ -1.57
HIF3AQ9Y2N7 AC090686.1-201ENST00000481577 749 ntBASIC5.22□□□□□ -1.57
HIF3AQ9Y2N7 LINC00492-201ENST00000504436 593 ntTSL 3 BASIC5.22□□□□□ -1.57
HIF3AQ9Y2N7 AC010468.2-201ENST00000511981 438 ntTSL 2 BASIC5.22□□□□□ -1.57
HIF3AQ9Y2N7 AC016065.2-201ENST00000514530 444 ntBASIC5.22□□□□□ -1.57
HIF3AQ9Y2N7 RNU6-64P-201ENST00000517119 105 ntBASIC5.22□□□□□ -1.57
HIF3AQ9Y2N7 AC139365.2-201ENST00000517972 253 ntBASIC5.22□□□□□ -1.57
HIF3AQ9Y2N7 AP006259.1-201ENST00000528520 561 ntTSL 2 BASIC5.22□□□□□ -1.57
HIF3AQ9Y2N7 AC007513.1-201ENST00000548740 379 ntTSL 3 BASIC5.22□□□□□ -1.57
HIF3AQ9Y2N7 DYNLL1P4-201ENST00000549314 266 ntBASIC5.22□□□□□ -1.57
HIF3AQ9Y2N7 HSBP1P1-201ENST00000555205 166 ntBASIC5.22□□□□□ -1.57
HIF3AQ9Y2N7 TMEM159-205ENST00000572599 713 ntAPPRIS P1 TSL 5 BASIC5.22□□□□□ -1.57
HIF3AQ9Y2N7 MIR4502-201ENST00000580432 81 ntBASIC5.22□□□□□ -1.57
HIF3AQ9Y2N7 AC010649.1-203ENST00000592230 454 ntTSL 2 BASIC5.22□□□□□ -1.57
HIF3AQ9Y2N7 AL355297.3-201ENST00000604082 446 ntBASIC5.22□□□□□ -1.57
HIF3AQ9Y2N7 AL096712.1-201ENST00000614561 159 ntBASIC5.22□□□□□ -1.57
HIF3AQ9Y2N7 PCBP1-AS1-360ENST00000630377 598 ntTSL 5 BASIC5.22□□□□□ -1.57
HIF3AQ9Y2N7 AC055839.1-201ENST00000634467 498 ntBASIC5.22□□□□□ -1.57
HIF3AQ9Y2N7 MUT-201ENST00000274813 3749 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
HIF3AQ9Y2N7 PCGF5-201ENST00000336126 7018 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
HIF3AQ9Y2N7 SEM1-202ENST00000356686 2667 ntTSL 5 BASIC5.22□□□□□ -1.57
HIF3AQ9Y2N7 AC007681.1-201ENST00000604271 3438 ntTSL 4 BASIC5.22□□□□□ -1.57
HIF3AQ9Y2N7 ZNF143-201ENST00000299606 2562 ntTSL 5 BASIC5.22□□□□□ -1.57
HIF3AQ9Y2N7 LRRC49-223ENST00000560369 2586 ntAPPRIS ALT1 TSL 2 BASIC5.22□□□□□ -1.57
HIF3AQ9Y2N7 ZNF189-201ENST00000259395 3115 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
HIF3AQ9Y2N7 CEP85L-201ENST00000360290 1736 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 112 ms