Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 RPL21P109-201ENST00000422213 475 ntBASIC3.23□□□□□ -1.89
FOXA2Q9Y261 AC107081.2-201ENST00000425779 802 ntTSL 5 BASIC3.23□□□□□ -1.89
FOXA2Q9Y261 AL022396.1-201ENST00000427011 386 ntTSL 3 BASIC3.23□□□□□ -1.89
FOXA2Q9Y261 AL078601.2-201ENST00000429444 474 ntTSL 2 BASIC3.23□□□□□ -1.89
FOXA2Q9Y261 SNRPEP4-201ENST00000435815 279 ntBASIC3.23□□□□□ -1.89
FOXA2Q9Y261 MTCO2P20-201ENST00000437339 673 ntBASIC3.23□□□□□ -1.89
FOXA2Q9Y261 LINC01052-201ENST00000437777 496 ntTSL 3 BASIC3.23□□□□□ -1.89
FOXA2Q9Y261 AL162384.1-201ENST00000437881 499 ntTSL 2 BASIC3.23□□□□□ -1.89
FOXA2Q9Y261 CR769776.1-201ENST00000441254 787 ntBASIC3.23□□□□□ -1.89
FOXA2Q9Y261 MTND5P14-201ENST00000441481 1267 ntBASIC3.23□□□□□ -1.89
FOXA2Q9Y261 AC092155.1-201ENST00000444672 573 ntTSL 4 BASIC3.23□□□□□ -1.89
FOXA2Q9Y261 AC009299.3-202ENST00000445372 538 ntTSL 3 BASIC3.23□□□□□ -1.89
FOXA2Q9Y261 AL606517.1-201ENST00000446914 387 ntBASIC3.23□□□□□ -1.89
FOXA2Q9Y261 OR6K5P-201ENST00000447050 945 ntBASIC3.23□□□□□ -1.89
FOXA2Q9Y261 AL500522.2-201ENST00000448562 343 ntBASIC3.23□□□□□ -1.89
FOXA2Q9Y261 PTPRG-AS1-202ENST00000466893 823 ntTSL 4 BASIC3.23□□□□□ -1.89
FOXA2Q9Y261 RPL7P19-201ENST00000469948 618 ntBASIC3.23□□□□□ -1.89
FOXA2Q9Y261 AC091951.3-201ENST00000504093 246 ntBASIC3.23□□□□□ -1.89
FOXA2Q9Y261 AC093895.1-203ENST00000506814 591 ntTSL 5 BASIC3.23□□□□□ -1.89
FOXA2Q9Y261 NREP-AS1-202ENST00000507222 610 ntTSL 3 BASIC3.23□□□□□ -1.89
FOXA2Q9Y261 TXNP6-201ENST00000510190 310 ntBASIC3.23□□□□□ -1.89
FOXA2Q9Y261 LINC02241-202ENST00000512688 467 ntTSL 3 BASIC3.23□□□□□ -1.89
FOXA2Q9Y261 AC026726.1-201ENST00000512859 601 ntBASIC3.23□□□□□ -1.89
FOXA2Q9Y261 LINC02365-202ENST00000520280 607 ntTSL 3 BASIC3.23□□□□□ -1.89
FOXA2Q9Y261 XIRP2-AS1-201ENST00000525330 776 ntTSL 3 BASIC3.23□□□□□ -1.89
FOXA2Q9Y261 AC022690.1-201ENST00000526681 550 ntBASIC3.23□□□□□ -1.89
FOXA2Q9Y261 SAMD15-202ENST00000533095 412 ntTSL 5 BASIC3.23□□□□□ -1.89
FOXA2Q9Y261 AC092745.2-201ENST00000537764 620 ntTSL 3 BASIC3.23□□□□□ -1.89
FOXA2Q9Y261 AC025265.2-201ENST00000551905 478 ntTSL 3 BASIC3.23□□□□□ -1.89
FOXA2Q9Y261 AC051619.4-201ENST00000560034 292 ntTSL 5 BASIC3.23□□□□□ -1.89
FOXA2Q9Y261 HSPE1P5-201ENST00000561489 272 ntBASIC3.23□□□□□ -1.89
FOXA2Q9Y261 LINC02131-201ENST00000563289 419 ntTSL 2 BASIC3.23□□□□□ -1.89
FOXA2Q9Y261 AC018554.1-201ENST00000565506 800 ntTSL 2 BASIC3.23□□□□□ -1.89
FOXA2Q9Y261 AC055876.1-202ENST00000567053 138 ntBASIC3.23□□□□□ -1.89
FOXA2Q9Y261 MIR4474-201ENST00000579189 78 ntBASIC3.23□□□□□ -1.89
FOXA2Q9Y261 AC022916.3-201ENST00000592961 742 ntBASIC3.23□□□□□ -1.89
FOXA2Q9Y261 VN1R82P-201ENST00000601481 356 ntBASIC3.23□□□□□ -1.89
FOXA2Q9Y261 AC008962.1-201ENST00000605729 304 ntBASIC3.23□□□□□ -1.89
FOXA2Q9Y261 AF230666.1-202ENST00000608375 870 ntTSL 5 BASIC3.23□□□□□ -1.89
FOXA2Q9Y261 AC068831.7-201ENST00000616954 363 ntBASIC3.23□□□□□ -1.89
FOXA2Q9Y261 AP000484.1-201ENST00000620067 1252 ntBASIC3.23□□□□□ -1.89
FOXA2Q9Y261 AC079228.1-201ENST00000624774 1049 ntBASIC3.23□□□□□ -1.89
FOXA2Q9Y261 PCBP1-AS1-348ENST00000629506 667 ntTSL 5 BASIC3.23□□□□□ -1.89
FOXA2Q9Y261 AC009951.2-201ENST00000634873 644 ntTSL 5 BASIC3.23□□□□□ -1.89
FOXA2Q9Y261 OR52H1-202ENST00000641796 1061 ntBASIC3.23□□□□□ -1.89
FOXA2Q9Y261 LRRTM4-201ENST00000409088 3616 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
FOXA2Q9Y261 CCDC102B-201ENST00000360242 2711 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
FOXA2Q9Y261 DDX43P2-201ENST00000604753 1354 ntBASIC3.23□□□□□ -1.89
FOXA2Q9Y261 ADGRL2-207ENST00000370723 5254 ntTSL 5 BASIC3.23□□□□□ -1.89
FOXA2Q9Y261 ADGRG2-205ENST00000357991 4661 ntAPPRIS P3 TSL 1 (best) BASIC3.23□□□□□ -1.89
FOXA2Q9Y261 ZNF883-201ENST00000619044 2051 ntAPPRIS P1 TSL 5 BASIC3.23□□□□□ -1.89
FOXA2Q9Y261 DAZ4-202ENST00000382314 3910 ntAPPRIS ALT2 TSL 5 BASIC3.23□□□□□ -1.89
FOXA2Q9Y261 RAB3C-201ENST00000282878 8896 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
FOXA2Q9Y261 AL513185.3-201ENST00000433335 1300 ntBASIC3.22□□□□□ -1.89
FOXA2Q9Y261 CFAP44-202ENST00000393845 7069 ntAPPRIS ALT2 TSL 5 BASIC3.22□□□□□ -1.89
FOXA2Q9Y261 SLITRK4-203ENST00000596188 8545 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
FOXA2Q9Y261 OR11H4-201ENST00000315409 1082 ntBASIC3.22□□□□□ -1.89
FOXA2Q9Y261 PPIL4-202ENST00000340881 1089 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
FOXA2Q9Y261 RNU6-97P-201ENST00000363387 104 ntBASIC3.22□□□□□ -1.89
FOXA2Q9Y261 RNU6-343P-201ENST00000364709 104 ntBASIC3.22□□□□□ -1.89
FOXA2Q9Y261 PLG-203ENST00000366924 1166 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
FOXA2Q9Y261 AC010163.2-201ENST00000416341 381 ntTSL 2 BASIC3.22□□□□□ -1.89
FOXA2Q9Y261 AL691426.1-201ENST00000416507 509 ntTSL 2 BASIC3.22□□□□□ -1.89
FOXA2Q9Y261 AP000550.2-201ENST00000417463 774 ntTSL 5 BASIC3.22□□□□□ -1.89
FOXA2Q9Y261 UBE2D3P2-201ENST00000424409 445 ntBASIC3.22□□□□□ -1.89
FOXA2Q9Y261 OR5BE1P-201ENST00000425977 939 ntBASIC3.22□□□□□ -1.89
FOXA2Q9Y261 TAB3-AS1-201ENST00000428263 245 ntTSL 5 BASIC3.22□□□□□ -1.89
FOXA2Q9Y261 AL139118.1-201ENST00000432707 446 ntTSL 3 BASIC3.22□□□□□ -1.89
FOXA2Q9Y261 AP000552.3-201ENST00000434730 775 ntTSL 5 BASIC3.22□□□□□ -1.89
FOXA2Q9Y261 AL592447.1-201ENST00000447592 540 ntBASIC3.22□□□□□ -1.89
FOXA2Q9Y261 AC114755.5-201ENST00000447760 831 ntBASIC3.22□□□□□ -1.89
FOXA2Q9Y261 PAXBP1P1-201ENST00000449315 447 ntBASIC3.22□□□□□ -1.89
FOXA2Q9Y261 AC010655.1-201ENST00000449336 292 ntBASIC3.22□□□□□ -1.89
FOXA2Q9Y261 AL391427.1-201ENST00000451575 425 ntTSL 3 BASIC3.22□□□□□ -1.89
FOXA2Q9Y261 USP9YP10-201ENST00000454868 628 ntBASIC3.22□□□□□ -1.89
FOXA2Q9Y261 AC104563.1-201ENST00000476147 376 ntBASIC3.22□□□□□ -1.89
FOXA2Q9Y261 AC083800.1-201ENST00000490594 246 ntAPPRIS P1 TSL 3 BASIC3.22□□□□□ -1.89
FOXA2Q9Y261 RPL7P23-201ENST00000493874 747 ntBASIC3.22□□□□□ -1.89
FOXA2Q9Y261 AC106821.1-201ENST00000502861 572 ntTSL 5 BASIC3.22□□□□□ -1.89
FOXA2Q9Y261 LINC02447-203ENST00000504402 292 ntTSL 3 BASIC3.22□□□□□ -1.89
FOXA2Q9Y261 AC108210.1-201ENST00000510772 825 ntTSL 3 BASIC3.22□□□□□ -1.89
FOXA2Q9Y261 AC024589.1-201ENST00000512207 263 ntBASIC3.22□□□□□ -1.89
FOXA2Q9Y261 AC022483.1-201ENST00000514020 567 ntBASIC3.22□□□□□ -1.89
FOXA2Q9Y261 MTND2P32-201ENST00000521584 1038 ntBASIC3.22□□□□□ -1.89
FOXA2Q9Y261 RGS5-218ENST00000526176 574 ntTSL 4 BASIC3.22□□□□□ -1.89
FOXA2Q9Y261 AC092851.1-201ENST00000535964 478 ntBASIC3.22□□□□□ -1.89
FOXA2Q9Y261 AC022509.2-201ENST00000540392 699 ntTSL 3 BASIC3.22□□□□□ -1.89
FOXA2Q9Y261 LINC00944-203ENST00000542248 548 ntTSL 4 BASIC3.22□□□□□ -1.89
FOXA2Q9Y261 AC073655.2-202ENST00000547927 401 ntTSL 3 BASIC3.22□□□□□ -1.89
FOXA2Q9Y261 AL031716.1-201ENST00000569106 530 ntTSL 5 BASIC3.22□□□□□ -1.89
FOXA2Q9Y261 AC136624.4-201ENST00000573044 370 ntBASIC3.22□□□□□ -1.89
FOXA2Q9Y261 AC044873.1-201ENST00000580487 399 ntTSL 3 BASIC3.22□□□□□ -1.89
FOXA2Q9Y261 GALP-203ENST00000590002 150 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
FOXA2Q9Y261 AC020914.4-201ENST00000597690 277 ntBASIC3.22□□□□□ -1.89
FOXA2Q9Y261 AL592221.1-201ENST00000605266 382 ntBASIC3.22□□□□□ -1.89
FOXA2Q9Y261 AL589740.1-208ENST00000606913 812 ntTSL 5 BASIC3.22□□□□□ -1.89
FOXA2Q9Y261 RNU4-89P-201ENST00000607443 133 ntBASIC3.22□□□□□ -1.89
FOXA2Q9Y261 AC007563.2-202ENST00000607591 394 ntTSL 3 BASIC3.22□□□□□ -1.89
FOXA2Q9Y261 STARD13-AS-221ENST00000608197 604 ntTSL 5 BASIC3.22□□□□□ -1.89
FOXA2Q9Y261 AC092653.1-201ENST00000608509 531 ntBASIC3.22□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 88.7 ms