Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 NBPF9-208ENST00000621074 4302 ntTSL 5 BASIC5.68□□□□□ -1.5
CCDC39Q9UFE4 Y_RNA.28-201ENST00000362554 111 ntBASIC5.68□□□□□ -1.5
CCDC39Q9UFE4 RN7SKP104-201ENST00000362605 328 ntBASIC5.68□□□□□ -1.5
CCDC39Q9UFE4 RNU6-492P-201ENST00000363035 104 ntBASIC5.68□□□□□ -1.5
CCDC39Q9UFE4 Y_RNA.197-201ENST00000364004 102 ntBASIC5.68□□□□□ -1.5
CCDC39Q9UFE4 CLEC7A-206ENST00000396484 1000 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
CCDC39Q9UFE4 AC009505.1-201ENST00000413151 424 ntTSL 2 BASIC5.68□□□□□ -1.5
CCDC39Q9UFE4 SRGAP3-AS1-201ENST00000414633 428 ntTSL 2 BASIC5.68□□□□□ -1.5
CCDC39Q9UFE4 DDX39BP1-205ENST00000422507 192 ntBASIC5.68□□□□□ -1.5
CCDC39Q9UFE4 AL357833.2-201ENST00000426811 430 ntTSL 3 BASIC5.68□□□□□ -1.5
CCDC39Q9UFE4 AL158073.1-201ENST00000426848 1104 ntBASIC5.68□□□□□ -1.5
CCDC39Q9UFE4 SRIP2-201ENST00000428470 166 ntBASIC5.68□□□□□ -1.5
CCDC39Q9UFE4 AL139397.1-201ENST00000430456 644 ntTSL 2 BASIC5.68□□□□□ -1.5
CCDC39Q9UFE4 ATP5JP1-201ENST00000431631 322 ntBASIC5.68□□□□□ -1.5
CCDC39Q9UFE4 RPL7P29-201ENST00000437151 728 ntBASIC5.68□□□□□ -1.5
CCDC39Q9UFE4 LSM1P1-201ENST00000438629 273 ntBASIC5.68□□□□□ -1.5
CCDC39Q9UFE4 KNOP1P3-201ENST00000446933 426 ntBASIC5.68□□□□□ -1.5
CCDC39Q9UFE4 AC048351.1-202ENST00000449483 735 ntTSL 3 BASIC5.68□□□□□ -1.5
CCDC39Q9UFE4 TCEA1P1-201ENST00000449716 880 ntBASIC5.68□□□□□ -1.5
CCDC39Q9UFE4 AL355592.1-201ENST00000450292 386 ntTSL 2 BASIC5.68□□□□□ -1.5
CCDC39Q9UFE4 SLC31A1P1-201ENST00000451221 567 ntBASIC5.68□□□□□ -1.5
CCDC39Q9UFE4 PPP1R2P5-201ENST00000457256 603 ntBASIC5.68□□□□□ -1.5
CCDC39Q9UFE4 MEMO1P3-201ENST00000459811 302 ntBASIC5.68□□□□□ -1.5
CCDC39Q9UFE4 GPX5-203ENST00000469384 428 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
CCDC39Q9UFE4 GAPDHP56-201ENST00000506031 988 ntBASIC5.68□□□□□ -1.5
CCDC39Q9UFE4 AC100801.1-202ENST00000518266 371 ntTSL 3 BASIC5.68□□□□□ -1.5
CCDC39Q9UFE4 AC009597.1-201ENST00000521215 584 ntTSL 4 BASIC5.68□□□□□ -1.5
CCDC39Q9UFE4 AP003181.2-201ENST00000528941 181 ntBASIC5.68□□□□□ -1.5
CCDC39Q9UFE4 AC008250.1-201ENST00000539874 522 ntTSL 3 BASIC5.68□□□□□ -1.5
CCDC39Q9UFE4 SDHAF2-208ENST00000543265 438 ntTSL 5 BASIC5.68□□□□□ -1.5
CCDC39Q9UFE4 AC090023.1-201ENST00000545750 443 ntTSL 3 BASIC5.68□□□□□ -1.5
CCDC39Q9UFE4 SNRPGP18-201ENST00000553000 214 ntBASIC5.68□□□□□ -1.5
CCDC39Q9UFE4 AC079075.1-201ENST00000559543 878 ntBASIC5.68□□□□□ -1.5
CCDC39Q9UFE4 AC008269.2-201ENST00000561915 1105 ntBASIC5.68□□□□□ -1.5
CCDC39Q9UFE4 POLR3GP2-201ENST00000588366 668 ntBASIC5.68□□□□□ -1.5
CCDC39Q9UFE4 AC005702.2-201ENST00000591035 481 ntAPPRIS P1 TSL 3 BASIC5.68□□□□□ -1.5
CCDC39Q9UFE4 ZNF561-AS1-207ENST00000591932 676 ntTSL 5 BASIC5.68□□□□□ -1.5
CCDC39Q9UFE4 AC024603.1-201ENST00000597938 592 ntTSL 4 BASIC5.68□□□□□ -1.5
CCDC39Q9UFE4 Z98949.1-202ENST00000600211 1282 ntTSL 5 BASIC5.68□□□□□ -1.5
CCDC39Q9UFE4 AC087763.1-201ENST00000603391 286 ntBASIC5.68□□□□□ -1.5
CCDC39Q9UFE4 AC090525.3-201ENST00000605601 189 ntBASIC5.68□□□□□ -1.5
CCDC39Q9UFE4 uc_338.22-201ENST00000622722 187 ntBASIC5.68□□□□□ -1.5
CCDC39Q9UFE4 ALG13-230ENST00000623189 458 ntTSL 3 BASIC5.68□□□□□ -1.5
CCDC39Q9UFE4 PIGN-245ENST00000640252 7924 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
CCDC39Q9UFE4 R3HDM1-201ENST00000264160 4648 ntAPPRIS P3 TSL 1 (best) BASIC5.68□□□□□ -1.5
CCDC39Q9UFE4 ABCB5-202ENST00000404938 5811 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
CCDC39Q9UFE4 HGF-201ENST00000222390 5989 ntAPPRIS P3 TSL 1 (best) BASIC5.68□□□□□ -1.5
CCDC39Q9UFE4 PAK3-213ENST00000620137 2130 ntTSL 5 BASIC5.68□□□□□ -1.5
CCDC39Q9UFE4 ZNF705D-202ENST00000400085 3377 ntAPPRIS P1 TSL 5 BASIC5.67□□□□□ -1.5
CCDC39Q9UFE4 LRRC53-201ENST00000294635 3859 ntAPPRIS P1 TSL 5 BASIC5.67□□□□□ -1.5
CCDC39Q9UFE4 PLCB4-203ENST00000378493 5796 ntAPPRIS ALT1 TSL 2 BASIC5.67□□□□□ -1.5
CCDC39Q9UFE4 CLCA1-201ENST00000234701 3310 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
CCDC39Q9UFE4 NACAP2-201ENST00000318548 624 ntBASIC5.67□□□□□ -1.5
CCDC39Q9UFE4 OR52E2-201ENST00000321522 978 ntAPPRIS P1 BASIC5.67□□□□□ -1.5
CCDC39Q9UFE4 SNORA63.7-201ENST00000365579 123 ntBASIC5.67□□□□□ -1.5
CCDC39Q9UFE4 AC009237.10-201ENST00000414112 510 ntBASIC5.67□□□□□ -1.5
CCDC39Q9UFE4 MTATP6P29-201ENST00000415057 132 ntBASIC5.67□□□□□ -1.5
CCDC39Q9UFE4 LINC01359-201ENST00000415842 1157 ntTSL 2 BASIC5.67□□□□□ -1.5
CCDC39Q9UFE4 ATP6V1G1P7-201ENST00000415853 349 ntBASIC5.67□□□□□ -1.5
CCDC39Q9UFE4 BOLA3P4-201ENST00000418151 400 ntBASIC5.67□□□□□ -1.5
CCDC39Q9UFE4 EIF4HP2-201ENST00000424380 563 ntBASIC5.67□□□□□ -1.5
CCDC39Q9UFE4 BX323845.1-201ENST00000432417 179 ntBASIC5.67□□□□□ -1.5
CCDC39Q9UFE4 AC023347.2-201ENST00000433994 462 ntBASIC5.67□□□□□ -1.5
CCDC39Q9UFE4 AL627308.1-201ENST00000435693 821 ntBASIC5.67□□□□□ -1.5
CCDC39Q9UFE4 MIR548XHG-203ENST00000437492 853 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
CCDC39Q9UFE4 LINC01683-201ENST00000443479 412 ntTSL 3 BASIC5.67□□□□□ -1.5
CCDC39Q9UFE4 AL591623.2-201ENST00000449978 222 ntBASIC5.67□□□□□ -1.5
CCDC39Q9UFE4 AL137802.1-201ENST00000452795 327 ntTSL 5 BASIC5.67□□□□□ -1.5
CCDC39Q9UFE4 AC092647.2-201ENST00000452998 253 ntBASIC5.67□□□□□ -1.5
CCDC39Q9UFE4 BTF3P15-201ENST00000455606 336 ntBASIC5.67□□□□□ -1.5
CCDC39Q9UFE4 RNU7-152P-201ENST00000458982 64 ntBASIC5.67□□□□□ -1.5
CCDC39Q9UFE4 AC017015.1-201ENST00000477387 286 ntBASIC5.67□□□□□ -1.5
CCDC39Q9UFE4 AC106872.3-201ENST00000495104 446 ntBASIC5.67□□□□□ -1.5
CCDC39Q9UFE4 EEF1A1P25-201ENST00000495704 1267 ntBASIC5.67□□□□□ -1.5
CCDC39Q9UFE4 AC108516.1-201ENST00000503666 257 ntTSL 2 BASIC5.67□□□□□ -1.5
CCDC39Q9UFE4 AC010350.1-201ENST00000504908 231 ntBASIC5.67□□□□□ -1.5
CCDC39Q9UFE4 LINC02200-202ENST00000508879 615 ntTSL 3 BASIC5.67□□□□□ -1.5
CCDC39Q9UFE4 IGHVII-44-2-201ENST00000517728 250 ntBASIC5.67□□□□□ -1.5
CCDC39Q9UFE4 RNU6-988P-201ENST00000519081 107 ntBASIC5.67□□□□□ -1.5
CCDC39Q9UFE4 COPS8P3-201ENST00000526024 482 ntBASIC5.67□□□□□ -1.5
CCDC39Q9UFE4 PAFAH1B2-206ENST00000530272 850 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
CCDC39Q9UFE4 LINC02366-202ENST00000541949 696 ntTSL 3 BASIC5.67□□□□□ -1.5
CCDC39Q9UFE4 GSTP1P1-201ENST00000548078 319 ntBASIC5.67□□□□□ -1.5
CCDC39Q9UFE4 AL139317.3-202ENST00000555689 528 ntTSL 5 BASIC5.67□□□□□ -1.5
CCDC39Q9UFE4 AC084882.1-201ENST00000561254 555 ntTSL 4 BASIC5.67□□□□□ -1.5
CCDC39Q9UFE4 AC011447.4-201ENST00000587562 111 ntBASIC5.67□□□□□ -1.5
CCDC39Q9UFE4 TPMTP1-201ENST00000592307 737 ntBASIC5.67□□□□□ -1.5
CCDC39Q9UFE4 AC007938.3-201ENST00000604965 623 ntBASIC5.67□□□□□ -1.5
CCDC39Q9UFE4 Z84480.1-201ENST00000605131 311 ntBASIC5.67□□□□□ -1.5
CCDC39Q9UFE4 AP000654.2-201ENST00000605633 586 ntBASIC5.67□□□□□ -1.5
CCDC39Q9UFE4 AC078899.5-201ENST00000612475 178 ntBASIC5.67□□□□□ -1.5
CCDC39Q9UFE4 CTSLP2-203ENST00000628708 493 ntTSL 5 BASIC5.67□□□□□ -1.5
CCDC39Q9UFE4 DCLRE1A-201ENST00000361384 4468 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
CCDC39Q9UFE4 FANCI-201ENST00000300027 4713 ntAPPRIS P3 TSL 5 BASIC5.67□□□□□ -1.5
CCDC39Q9UFE4 RPS6KA5-207ENST00000614987 26795 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
CCDC39Q9UFE4 CFAP47-202ENST00000313548 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC5.67□□□□□ -1.5
CCDC39Q9UFE4 FAM81B-201ENST00000283357 1560 ntAPPRIS P2 TSL 1 (best) BASIC5.67□□□□□ -1.5
CCDC39Q9UFE4 ARID2-205ENST00000444670 7316 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
CCDC39Q9UFE4 OBSCN-204ENST00000366707 26772 ntAPPRIS P1 TSL 5 BASIC5.66□□□□□ -1.5
CCDC39Q9UFE4 UBR1-201ENST00000290650 7761 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 111.5 ms