Protein–RNA interactions for Protein: Q9P1Q0

VPS54, Vacuolar protein sorting-associated protein 54, humanhuman

Predictions only

Length 977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54Q9P1Q0 AL162591.3-201ENST00000607963 681 ntTSL 3 BASIC3.66□□□□□ -1.82
VPS54Q9P1Q0 AL159169.3-201ENST00000608871 561 ntBASIC3.66□□□□□ -1.82
VPS54Q9P1Q0 DAOA-AS1_2.2-201ENST00000610818 204 ntBASIC3.66□□□□□ -1.82
VPS54Q9P1Q0 U73479.1-201ENST00000618062 168 ntBASIC3.66□□□□□ -1.82
VPS54Q9P1Q0 ZRANB2-AS2-221ENST00000624050 629 ntTSL 5 BASIC3.66□□□□□ -1.82
VPS54Q9P1Q0 CGA-204ENST00000627148 1010 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
VPS54Q9P1Q0 LINC00836-203ENST00000628620 1179 ntTSL 5 BASIC3.66□□□□□ -1.82
VPS54Q9P1Q0 SLC9C1-205ENST00000487372 3979 ntAPPRIS ALT2 TSL 1 (best) BASIC3.66□□□□□ -1.82
VPS54Q9P1Q0 CYYR1-AS1-201ENST00000357401 3412 ntTSL 2 BASIC3.66□□□□□ -1.82
VPS54Q9P1Q0 TMEM27-201ENST00000380342 1578 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
VPS54Q9P1Q0 ERBIN-212ENST00000508515 4374 ntTSL 5 BASIC3.66□□□□□ -1.82
VPS54Q9P1Q0 LINC00907-209ENST00000593234 3376 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
VPS54Q9P1Q0 CCDC68-201ENST00000337363 1457 ntAPPRIS P1 TSL 2 BASIC3.66□□□□□ -1.82
VPS54Q9P1Q0 DDX60L-207ENST00000505890 4568 ntTSL 2 BASIC3.66□□□□□ -1.82
VPS54Q9P1Q0 ADGRG4-203ENST00000394143 9931 ntAPPRIS P2 TSL 1 (best) BASIC3.65□□□□□ -1.82
VPS54Q9P1Q0 KLRC4-201ENST00000309384 930 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.83
VPS54Q9P1Q0 RNU6-374P-201ENST00000364146 108 ntBASIC3.65□□□□□ -1.83
VPS54Q9P1Q0 TMCO2-201ENST00000372766 739 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.83
VPS54Q9P1Q0 RNU6-921P-201ENST00000384361 107 ntBASIC3.65□□□□□ -1.83
VPS54Q9P1Q0 MIR649-201ENST00000384843 97 ntBASIC3.65□□□□□ -1.83
VPS54Q9P1Q0 AL139098.1-201ENST00000407291 389 ntBASIC3.65□□□□□ -1.83
VPS54Q9P1Q0 AP001599.1-201ENST00000426771 361 ntTSL 3 BASIC3.65□□□□□ -1.83
VPS54Q9P1Q0 BX890604.2-201ENST00000427883 474 ntBASIC3.65□□□□□ -1.83
VPS54Q9P1Q0 ARF4P2-201ENST00000430209 526 ntBASIC3.65□□□□□ -1.83
VPS54Q9P1Q0 AC092839.2-201ENST00000431130 377 ntTSL 3 BASIC3.65□□□□□ -1.83
VPS54Q9P1Q0 AL392046.1-203ENST00000450106 651 ntTSL 2 BASIC3.65□□□□□ -1.83
VPS54Q9P1Q0 RN7SL863P-201ENST00000462370 296 ntBASIC3.65□□□□□ -1.83
VPS54Q9P1Q0 GAPDHP39-201ENST00000481866 979 ntBASIC3.65□□□□□ -1.83
VPS54Q9P1Q0 RN7SL504P-201ENST00000494496 287 ntBASIC3.65□□□□□ -1.83
VPS54Q9P1Q0 ZBTB20-AS3-201ENST00000498630 464 ntTSL 3 BASIC3.65□□□□□ -1.83
VPS54Q9P1Q0 SCOC-205ENST00000502535 679 ntAPPRIS ALT1 TSL 3 BASIC3.65□□□□□ -1.83
VPS54Q9P1Q0 DYNLL1P6-201ENST00000503440 264 ntBASIC3.65□□□□□ -1.83
VPS54Q9P1Q0 AC010406.1-201ENST00000507948 555 ntTSL 3 BASIC3.65□□□□□ -1.83
VPS54Q9P1Q0 AC093752.1-206ENST00000511823 336 ntBASIC3.65□□□□□ -1.83
VPS54Q9P1Q0 AC010374.2-201ENST00000512933 535 ntBASIC3.65□□□□□ -1.83
VPS54Q9P1Q0 C8orf22-204ENST00000522267 739 ntAPPRIS ALT1 TSL 2 BASIC3.65□□□□□ -1.83
VPS54Q9P1Q0 AC006518.1-201ENST00000541449 943 ntBASIC3.65□□□□□ -1.83
VPS54Q9P1Q0 AC078962.4-201ENST00000546135 254 ntTSL 3 BASIC3.65□□□□□ -1.83
VPS54Q9P1Q0 MIR5047-201ENST00000579212 100 ntBASIC3.65□□□□□ -1.83
VPS54Q9P1Q0 MIR4666A-201ENST00000580160 79 ntBASIC3.65□□□□□ -1.83
VPS54Q9P1Q0 AC010928.3-201ENST00000587712 541 ntBASIC3.65□□□□□ -1.83
VPS54Q9P1Q0 AL022067.1-201ENST00000602426 454 ntBASIC3.65□□□□□ -1.83
VPS54Q9P1Q0 IL33-205ENST00000611532 757 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
VPS54Q9P1Q0 RPL36A-210ENST00000614077 881 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
VPS54Q9P1Q0 XIST_intron.1-201ENST00000619444 68 ntBASIC3.65□□□□□ -1.83
VPS54Q9P1Q0 AC013437.2-201ENST00000639587 677 ntBASIC3.65□□□□□ -1.83
VPS54Q9P1Q0 AC117529.2-201ENST00000512159 2068 ntBASIC3.65□□□□□ -1.83
VPS54Q9P1Q0 CPD-202ENST00000543464 4007 ntTSL 2 BASIC3.65□□□□□ -1.83
VPS54Q9P1Q0 KIAA0586-215ENST00000619722 5597 ntAPPRIS ALT2 TSL 2 BASIC3.65□□□□□ -1.83
VPS54Q9P1Q0 MTND4P9-201ENST00000507819 1346 ntBASIC3.65□□□□□ -1.83
VPS54Q9P1Q0 AL355578.1-201ENST00000607405 1328 ntBASIC3.65□□□□□ -1.83
VPS54Q9P1Q0 DPP10-205ENST00000410059 6278 ntAPPRIS ALT2 TSL 1 (best) BASIC3.64□□□□□ -1.83
VPS54Q9P1Q0 SOBP-204ENST00000618129 1550 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
VPS54Q9P1Q0 ZBTB26-202ENST00000373656 4443 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
VPS54Q9P1Q0 BCLAF3-202ENST00000379682 3217 ntAPPRIS ALT2 TSL 5 BASIC3.64□□□□□ -1.83
VPS54Q9P1Q0 OR5J2-201ENST00000312298 939 ntAPPRIS P1 BASIC3.64□□□□□ -1.83
VPS54Q9P1Q0 OR8B3-201ENST00000354597 942 ntAPPRIS P1 BASIC3.64□□□□□ -1.83
VPS54Q9P1Q0 SNORD46.1-201ENST00000364139 104 ntBASIC3.64□□□□□ -1.83
VPS54Q9P1Q0 RNA5-8SP4-201ENST00000365096 150 ntBASIC3.64□□□□□ -1.83
VPS54Q9P1Q0 SNRPE-201ENST00000367208 355 ntTSL 2 BASIC3.64□□□□□ -1.83
VPS54Q9P1Q0 OR8B2-201ENST00000375013 942 ntAPPRIS P1 BASIC3.64□□□□□ -1.83
VPS54Q9P1Q0 MIR620-201ENST00000385232 95 ntBASIC3.64□□□□□ -1.83
VPS54Q9P1Q0 MT-TC-201ENST00000387405 66 ntBASIC3.64□□□□□ -1.83
VPS54Q9P1Q0 FCF1P2-201ENST00000415284 583 ntBASIC3.64□□□□□ -1.83
VPS54Q9P1Q0 AC006960.1-201ENST00000419980 153 ntBASIC3.64□□□□□ -1.83
VPS54Q9P1Q0 MTCYBP24-201ENST00000420387 1106 ntBASIC3.64□□□□□ -1.83
VPS54Q9P1Q0 AC244098.2-201ENST00000422068 99 ntBASIC3.64□□□□□ -1.83
VPS54Q9P1Q0 AC023469.2-201ENST00000425983 657 ntTSL 5 BASIC3.64□□□□□ -1.83
VPS54Q9P1Q0 ANKRD10-IT1-201ENST00000426991 800 ntTSL 2 BASIC3.64□□□□□ -1.83
VPS54Q9P1Q0 AC007271.1-201ENST00000428188 382 ntTSL 3 BASIC3.64□□□□□ -1.83
VPS54Q9P1Q0 MTATP6P14-201ENST00000455189 673 ntBASIC3.64□□□□□ -1.83
VPS54Q9P1Q0 AC109925.1-201ENST00000478069 331 ntBASIC3.64□□□□□ -1.83
VPS54Q9P1Q0 NCOR1P1-202ENST00000486162 291 ntBASIC3.64□□□□□ -1.83
VPS54Q9P1Q0 PHBP14-201ENST00000512887 367 ntBASIC3.64□□□□□ -1.83
VPS54Q9P1Q0 AC118942.1-202ENST00000529081 578 ntTSL 5 BASIC3.64□□□□□ -1.83
VPS54Q9P1Q0 FBXO3-AS1-202ENST00000533046 386 ntTSL 3 BASIC3.64□□□□□ -1.83
VPS54Q9P1Q0 AC087242.1-201ENST00000536931 572 ntTSL 4 BASIC3.64□□□□□ -1.83
VPS54Q9P1Q0 LINC02384-206ENST00000541707 904 ntTSL 3 BASIC3.64□□□□□ -1.83
VPS54Q9P1Q0 ATF7IP2-206ENST00000543967 998 ntTSL 2 BASIC3.64□□□□□ -1.83
VPS54Q9P1Q0 AC012170.3-201ENST00000560159 297 ntTSL 2 BASIC3.64□□□□□ -1.83
VPS54Q9P1Q0 AC021739.4-201ENST00000561417 569 ntTSL 4 BASIC3.64□□□□□ -1.83
VPS54Q9P1Q0 TMEM87A-212ENST00000568432 750 ntTSL 3 BASIC3.64□□□□□ -1.83
VPS54Q9P1Q0 MIR3944-201ENST00000581277 108 ntBASIC3.64□□□□□ -1.83
VPS54Q9P1Q0 AC090506.1-201ENST00000583089 572 ntTSL 4 BASIC3.64□□□□□ -1.83
VPS54Q9P1Q0 PRELID3BP8-201ENST00000604148 295 ntBASIC3.64□□□□□ -1.83
VPS54Q9P1Q0 AC073387.2-201ENST00000604797 784 ntBASIC3.64□□□□□ -1.83
VPS54Q9P1Q0 AC007179.3-201ENST00000604976 235 ntBASIC3.64□□□□□ -1.83
VPS54Q9P1Q0 AL133445.2-201ENST00000611191 527 ntBASIC3.64□□□□□ -1.83
VPS54Q9P1Q0 AC138393.3-201ENST00000618397 573 ntTSL 3 BASIC3.64□□□□□ -1.83
VPS54Q9P1Q0 AC084824.4-201ENST00000620106 731 ntBASIC3.64□□□□□ -1.83
VPS54Q9P1Q0 AL354696.2-202ENST00000620300 613 ntTSL 2 BASIC3.64□□□□□ -1.83
VPS54Q9P1Q0 AC026422.1-201ENST00000623961 452 ntBASIC3.64□□□□□ -1.83
VPS54Q9P1Q0 NEB-201ENST00000172853 20634 ntAPPRIS ALT2 TSL 1 (best) BASIC3.64□□□□□ -1.83
VPS54Q9P1Q0 SUCLA2P2-201ENST00000417269 1309 ntBASIC3.64□□□□□ -1.83
VPS54Q9P1Q0 AL645568.2-201ENST00000432815 1337 ntBASIC3.64□□□□□ -1.83
VPS54Q9P1Q0 MTND5P1-201ENST00000445440 1375 ntBASIC3.63□□□□□ -1.83
VPS54Q9P1Q0 MTND5P24-201ENST00000438892 1767 ntBASIC3.63□□□□□ -1.83
VPS54Q9P1Q0 PRB2-201ENST00000389362 1429 ntAPPRIS P2 TSL 5 BASIC3.63□□□□□ -1.83
VPS54Q9P1Q0 OR8K5-201ENST00000313447 924 ntAPPRIS P1 BASIC3.63□□□□□ -1.83
VPS54Q9P1Q0 RNU6-839P-201ENST00000363347 108 ntBASIC3.63□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 91.1 ms