Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 AC093772.1-201ENST00000513519 506 ntTSL 2 BASIC3.6□□□□□ -1.83
HDDC3Q8N4P3 RNU2-27P-201ENST00000516185 142 ntBASIC3.6□□□□□ -1.83
HDDC3Q8N4P3 RN7SKP209-201ENST00000516888 304 ntBASIC3.6□□□□□ -1.83
HDDC3Q8N4P3 AC018437.2-201ENST00000517369 389 ntTSL 5 BASIC3.6□□□□□ -1.83
HDDC3Q8N4P3 RPL12P22-201ENST00000519073 490 ntBASIC3.6□□□□□ -1.83
HDDC3Q8N4P3 SKP1-210ENST00000522855 802 ntAPPRIS P4 TSL 2 BASIC3.6□□□□□ -1.83
HDDC3Q8N4P3 AL358335.2-201ENST00000555693 487 ntTSL 3 BASIC3.6□□□□□ -1.83
HDDC3Q8N4P3 AC023825.1-201ENST00000566704 1030 ntBASIC3.6□□□□□ -1.83
HDDC3Q8N4P3 FOPNL-204ENST00000573396 735 ntTSL 3 BASIC3.6□□□□□ -1.83
HDDC3Q8N4P3 AC011509.1-201ENST00000589512 164 ntTSL 3 BASIC3.6□□□□□ -1.83
HDDC3Q8N4P3 AP001330.4-201ENST00000604350 154 ntBASIC3.6□□□□□ -1.83
HDDC3Q8N4P3 AC006077.1-201ENST00000604746 343 ntBASIC3.6□□□□□ -1.83
HDDC3Q8N4P3 AC231759.1-201ENST00000616455 597 ntBASIC3.6□□□□□ -1.83
HDDC3Q8N4P3 AC080188.3-201ENST00000624842 748 ntBASIC3.6□□□□□ -1.83
HDDC3Q8N4P3 AL136164.4-201ENST00000625013 2135 ntBASIC3.6□□□□□ -1.83
HDDC3Q8N4P3 LINC00836-203ENST00000628620 1179 ntTSL 5 BASIC3.6□□□□□ -1.83
HDDC3Q8N4P3 LINC02086-205ENST00000628749 679 ntTSL 5 BASIC3.6□□□□□ -1.83
HDDC3Q8N4P3 ACADM-203ENST00000420607 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC3.6□□□□□ -1.83
HDDC3Q8N4P3 NCAPGP1-201ENST00000505112 1814 ntBASIC3.6□□□□□ -1.83
HDDC3Q8N4P3 SYTL2-203ENST00000359152 4123 ntAPPRIS ALT1 TSL 1 (best) BASIC3.6□□□□□ -1.83
HDDC3Q8N4P3 LINC01828-203ENST00000452716 3250 ntTSL 5 BASIC3.6□□□□□ -1.83
HDDC3Q8N4P3 SLAIN1-203ENST00000351546 2394 ntTSL 2 BASIC3.6□□□□□ -1.83
HDDC3Q8N4P3 THUMPD3P1-201ENST00000506556 1480 ntBASIC3.6□□□□□ -1.83
HDDC3Q8N4P3 LINC01094-203ENST00000504675 1985 ntTSL 2 BASIC3.6□□□□□ -1.83
HDDC3Q8N4P3 GABRG2-213ENST00000639046 3058 ntTSL 5 BASIC3.59□□□□□ -1.83
HDDC3Q8N4P3 CPB2-201ENST00000181383 1717 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
HDDC3Q8N4P3 OR6K3-202ENST00000368146 996 ntBASIC3.59□□□□□ -1.83
HDDC3Q8N4P3 Y_RNA.500-201ENST00000384466 111 ntBASIC3.59□□□□□ -1.83
HDDC3Q8N4P3 SNORA40.4-201ENST00000390971 128 ntBASIC3.59□□□□□ -1.83
HDDC3Q8N4P3 RNU6-1300P-201ENST00000391046 108 ntBASIC3.59□□□□□ -1.83
HDDC3Q8N4P3 MS4A4E-201ENST00000398984 479 ntTSL 5 BASIC3.59□□□□□ -1.83
HDDC3Q8N4P3 AC092447.6-201ENST00000414578 210 ntBASIC3.59□□□□□ -1.83
HDDC3Q8N4P3 AC093865.1-201ENST00000415387 433 ntTSL 3 BASIC3.59□□□□□ -1.83
HDDC3Q8N4P3 AC099677.1-201ENST00000420575 175 ntBASIC3.59□□□□□ -1.83
HDDC3Q8N4P3 RPL7P44-201ENST00000424827 742 ntBASIC3.59□□□□□ -1.83
HDDC3Q8N4P3 DUTP6-201ENST00000425573 462 ntBASIC3.59□□□□□ -1.83
HDDC3Q8N4P3 DPRXP1-201ENST00000426312 460 ntBASIC3.59□□□□□ -1.83
HDDC3Q8N4P3 AC092634.2-201ENST00000428146 1010 ntBASIC3.59□□□□□ -1.83
HDDC3Q8N4P3 AC079780.1-201ENST00000428259 207 ntBASIC3.59□□□□□ -1.83
HDDC3Q8N4P3 BLOC1S2P1-201ENST00000428431 301 ntBASIC3.59□□□□□ -1.83
HDDC3Q8N4P3 AC005326.1-201ENST00000429197 123 ntBASIC3.59□□□□□ -1.83
HDDC3Q8N4P3 RPL23AP31-201ENST00000456160 467 ntBASIC3.59□□□□□ -1.83
HDDC3Q8N4P3 AC067945.3-201ENST00000456176 386 ntTSL 5 BASIC3.59□□□□□ -1.83
HDDC3Q8N4P3 AL136097.1-201ENST00000456945 913 ntBASIC3.59□□□□□ -1.83
HDDC3Q8N4P3 BTF3P5-201ENST00000457252 467 ntBASIC3.59□□□□□ -1.83
HDDC3Q8N4P3 RNU7-170P-201ENST00000459303 61 ntBASIC3.59□□□□□ -1.83
HDDC3Q8N4P3 AP001486.1-201ENST00000463339 476 ntBASIC3.59□□□□□ -1.83
HDDC3Q8N4P3 AC025518.1-201ENST00000479856 347 ntBASIC3.59□□□□□ -1.83
HDDC3Q8N4P3 RPL7P23-201ENST00000493874 747 ntBASIC3.59□□□□□ -1.83
HDDC3Q8N4P3 AC096751.1-202ENST00000502691 1067 ntBASIC3.59□□□□□ -1.83
HDDC3Q8N4P3 AC010406.1-201ENST00000507948 555 ntTSL 3 BASIC3.59□□□□□ -1.83
HDDC3Q8N4P3 KLHL2P1-201ENST00000508691 521 ntBASIC3.59□□□□□ -1.83
HDDC3Q8N4P3 AC105914.1-201ENST00000511798 226 ntBASIC3.59□□□□□ -1.83
HDDC3Q8N4P3 AC022390.1-201ENST00000517854 434 ntTSL 3 BASIC3.59□□□□□ -1.83
HDDC3Q8N4P3 AC103726.1-201ENST00000520785 474 ntTSL 2 BASIC3.59□□□□□ -1.83
HDDC3Q8N4P3 AP001189.2-201ENST00000527320 189 ntBASIC3.59□□□□□ -1.83
HDDC3Q8N4P3 AC087362.1-201ENST00000527912 434 ntTSL 5 BASIC3.59□□□□□ -1.83
HDDC3Q8N4P3 AP000442.2-202ENST00000531311 601 ntTSL 3 BASIC3.59□□□□□ -1.83
HDDC3Q8N4P3 OOSP2-203ENST00000532905 496 ntAPPRIS ALT2 TSL 3 BASIC3.59□□□□□ -1.83
HDDC3Q8N4P3 SNRPGP16-201ENST00000533275 226 ntBASIC3.59□□□□□ -1.83
HDDC3Q8N4P3 AC068339.2-201ENST00000534395 618 ntBASIC3.59□□□□□ -1.83
HDDC3Q8N4P3 AC024224.1-201ENST00000538284 609 ntBASIC3.59□□□□□ -1.83
HDDC3Q8N4P3 AL163153.1-201ENST00000554223 283 ntBASIC3.59□□□□□ -1.83
HDDC3Q8N4P3 MIR4474-201ENST00000579189 78 ntBASIC3.59□□□□□ -1.83
HDDC3Q8N4P3 AL109653.1-201ENST00000603091 248 ntBASIC3.59□□□□□ -1.83
HDDC3Q8N4P3 AC010738.1-201ENST00000604970 987 ntBASIC3.59□□□□□ -1.83
HDDC3Q8N4P3 AL592148.2-201ENST00000612210 372 ntBASIC3.59□□□□□ -1.83
HDDC3Q8N4P3 AC135507.2-201ENST00000612443 309 ntBASIC3.59□□□□□ -1.83
HDDC3Q8N4P3 AC243585.2-201ENST00000619099 508 ntTSL 3 BASIC3.59□□□□□ -1.83
HDDC3Q8N4P3 MIR8057-201ENST00000620957 69 ntBASIC3.59□□□□□ -1.83
HDDC3Q8N4P3 U4.6-201ENST00000621618 127 ntBASIC3.59□□□□□ -1.83
HDDC3Q8N4P3 SATB1-AS1-269ENST00000630766 591 ntTSL 5 BASIC3.59□□□□□ -1.83
HDDC3Q8N4P3 TMEM67-202ENST00000409623 3255 ntTSL 2 BASIC3.59□□□□□ -1.83
HDDC3Q8N4P3 MTND4P10-201ENST00000446199 1363 ntBASIC3.59□□□□□ -1.83
HDDC3Q8N4P3 TAB3-203ENST00000378930 6255 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.84
HDDC3Q8N4P3 PKN2-AS1-202ENST00000458097 3542 ntTSL 2 BASIC3.59□□□□□ -1.84
HDDC3Q8N4P3 DAOA-201ENST00000329625 1433 ntAPPRIS ALT2 TSL 1 (best) BASIC3.59□□□□□ -1.84
HDDC3Q8N4P3 Z99496.1-201ENST00000469424 1477 ntBASIC3.59□□□□□ -1.84
HDDC3Q8N4P3 ADAM29-211ENST00000514159 3010 ntAPPRIS P1 TSL 4 BASIC3.59□□□□□ -1.84
HDDC3Q8N4P3 AC025164.2-202ENST00000499685 5699 ntTSL 3 BASIC3.59□□□□□ -1.84
HDDC3Q8N4P3 RAD17-206ENST00000358030 2648 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
HDDC3Q8N4P3 AC091534.1-201ENST00000548779 1751 ntTSL 2 BASIC3.58□□□□□ -1.84
HDDC3Q8N4P3 SPZ1-201ENST00000296739 1868 ntAPPRIS P2 BASIC3.58□□□□□ -1.84
HDDC3Q8N4P3 CSN3-201ENST00000304954 836 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
HDDC3Q8N4P3 OR10A7-201ENST00000326258 951 ntAPPRIS P1 BASIC3.58□□□□□ -1.84
HDDC3Q8N4P3 RNU6-236P-201ENST00000363886 106 ntBASIC3.58□□□□□ -1.84
HDDC3Q8N4P3 SPANXN3-201ENST00000370503 590 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
HDDC3Q8N4P3 HSPE1P8-201ENST00000406997 288 ntBASIC3.58□□□□□ -1.84
HDDC3Q8N4P3 AC069282.1-201ENST00000411911 526 ntBASIC3.58□□□□□ -1.84
HDDC3Q8N4P3 AL024507.1-201ENST00000412741 274 ntBASIC3.58□□□□□ -1.84
HDDC3Q8N4P3 AC004946.1-201ENST00000421825 751 ntTSL 3 BASIC3.58□□□□□ -1.84
HDDC3Q8N4P3 ATP5JP1-201ENST00000431631 322 ntBASIC3.58□□□□□ -1.84
HDDC3Q8N4P3 MTND4LP10-201ENST00000435146 291 ntBASIC3.58□□□□□ -1.84
HDDC3Q8N4P3 LINC00113-203ENST00000442550 572 ntTSL 3 BASIC3.58□□□□□ -1.84
HDDC3Q8N4P3 AC115115.1-201ENST00000449927 248 ntBASIC3.58□□□□□ -1.84
HDDC3Q8N4P3 ASH1L-IT1-201ENST00000458371 448 ntTSL 5 BASIC3.58□□□□□ -1.84
HDDC3Q8N4P3 snoU109.4-201ENST00000458953 143 ntBASIC3.58□□□□□ -1.84
HDDC3Q8N4P3 RN7SL93P-201ENST00000463035 293 ntBASIC3.58□□□□□ -1.84
HDDC3Q8N4P3 TIPARP-AS1-201ENST00000463449 735 ntTSL 3 BASIC3.58□□□□□ -1.84
HDDC3Q8N4P3 FAIM-205ENST00000464668 641 ntAPPRIS P3 TSL 5 BASIC3.58□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 85.5 ms