Protein–RNA interactions for Protein: Q68DE3

USF3, Basic helix-loop-helix domain-containing protein USF3, humanhuman

Predictions only

Length 2,245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF3Q68DE3 AC016727.1-205ENST00000605437 569 ntBASIC2.03□□□□□ -2.08
USF3Q68DE3 AC012594.1-272ENST00000625790 710 ntTSL 5 BASIC2.03□□□□□ -2.08
USF3Q68DE3 MTND5P6-201ENST00000422338 1798 ntBASIC2.03□□□□□ -2.08
USF3Q68DE3 HSPA8P4-201ENST00000511877 1920 ntBASIC2.03□□□□□ -2.08
USF3Q68DE3 AC138915.3-201ENST00000562908 1389 ntBASIC2.03□□□□□ -2.08
USF3Q68DE3 HELLS-201ENST00000239026 2740 ntTSL 5 BASIC2.03□□□□□ -2.08
USF3Q68DE3 U8.8-201ENST00000365399 135 ntBASIC2.03□□□□□ -2.08
USF3Q68DE3 AL592435.1-201ENST00000416401 469 ntTSL 3 BASIC2.03□□□□□ -2.08
USF3Q68DE3 MTCO2P17-201ENST00000424336 677 ntBASIC2.03□□□□□ -2.08
USF3Q68DE3 NPM1P49-201ENST00000448027 714 ntBASIC2.03□□□□□ -2.08
USF3Q68DE3 RPS4XP6-201ENST00000477670 797 ntBASIC2.03□□□□□ -2.08
USF3Q68DE3 OR9N1P-201ENST00000491296 333 ntBASIC2.03□□□□□ -2.08
USF3Q68DE3 AC104126.1-201ENST00000504004 711 ntTSL 3 BASIC2.03□□□□□ -2.08
USF3Q68DE3 NDUFB4P9-201ENST00000511646 388 ntBASIC2.03□□□□□ -2.08
USF3Q68DE3 SNORA31.1-201ENST00000515993 133 ntBASIC2.03□□□□□ -2.08
USF3Q68DE3 SNORA31.5-201ENST00000516190 133 ntBASIC2.03□□□□□ -2.08
USF3Q68DE3 SNORA31.15-201ENST00000516771 132 ntBASIC2.03□□□□□ -2.08
USF3Q68DE3 AC022509.2-201ENST00000540392 699 ntTSL 3 BASIC2.03□□□□□ -2.08
USF3Q68DE3 MIR6873-201ENST00000622788 63 ntBASIC2.03□□□□□ -2.08
USF3Q68DE3 NR5A2-201ENST00000236914 3115 ntTSL 1 (best) BASIC2.02□□□□□ -2.09
USF3Q68DE3 FOXP2-217ENST00000462331 1388 ntTSL 1 (best) BASIC2.02□□□□□ -2.09
USF3Q68DE3 AL079342.1-201ENST00000401460 267 ntBASIC2.02□□□□□ -2.09
USF3Q68DE3 GSTA9P-201ENST00000406231 611 ntBASIC2.02□□□□□ -2.09
USF3Q68DE3 RNU6ATAC15P-201ENST00000408279 121 ntBASIC2.02□□□□□ -2.09
USF3Q68DE3 AL158825.1-201ENST00000414735 521 ntBASIC2.02□□□□□ -2.09
USF3Q68DE3 ELF3-AS1-201ENST00000415582 500 ntTSL 2 BASIC2.02□□□□□ -2.09
USF3Q68DE3 AL096701.2-201ENST00000416920 238 ntBASIC2.02□□□□□ -2.09
USF3Q68DE3 AC006333.1-201ENST00000422401 410 ntTSL 3 BASIC2.02□□□□□ -2.09
USF3Q68DE3 AL683807.1-202ENST00000432272 382 ntTSL 2 BASIC2.02□□□□□ -2.09
USF3Q68DE3 LINC01378-202ENST00000437514 783 ntTSL 3 BASIC2.02□□□□□ -2.09
USF3Q68DE3 SATB1-AS1-204ENST00000453361 726 ntTSL 3 BASIC2.02□□□□□ -2.09
USF3Q68DE3 PAIP2-205ENST00000510080 858 ntAPPRIS P1 TSL 1 (best) BASIC2.02□□□□□ -2.09
USF3Q68DE3 RNA5SP281-201ENST00000516504 135 ntBASIC2.02□□□□□ -2.09
USF3Q68DE3 AC015712.3-201ENST00000559380 164 ntBASIC2.02□□□□□ -2.09
USF3Q68DE3 CYP3A51P-201ENST00000633513 256 ntBASIC2.02□□□□□ -2.09
USF3Q68DE3 AP000936.1-201ENST00000442124 483 ntTSL 5 BASIC2.02□□□□□ -2.09
USF3Q68DE3 HIGD1AP2-201ENST00000446367 280 ntBASIC2.02□□□□□ -2.09
USF3Q68DE3 RPS27AP9-201ENST00000477681 438 ntBASIC2.02□□□□□ -2.09
USF3Q68DE3 AC004486.1-201ENST00000546846 233 ntBASIC2.02□□□□□ -2.09
USF3Q68DE3 AC105137.2-201ENST00000569073 466 ntBASIC2.02□□□□□ -2.09
USF3Q68DE3 BNIP3P8-201ENST00000597863 560 ntBASIC2.02□□□□□ -2.09
USF3Q68DE3 LIPI-201ENST00000344577 1652 ntAPPRIS P2 TSL 1 (best) BASIC2.02□□□□□ -2.09
USF3Q68DE3 C5orf51-201ENST00000381647 5241 ntAPPRIS P1 TSL 1 (best) BASIC2.01□□□□□ -2.09
USF3Q68DE3 AF127577.6-201ENST00000623352 2191 ntBASIC2.01□□□□□ -2.09
USF3Q68DE3 Y_RNA.238-201ENST00000364441 102 ntBASIC2.01□□□□□ -2.09
USF3Q68DE3 ISCA1P6-201ENST00000427740 390 ntBASIC2.01□□□□□ -2.09
USF3Q68DE3 CLEC5A-202ENST00000438351 743 ntTSL 3 BASIC2.01□□□□□ -2.09
USF3Q68DE3 VN1R17P-201ENST00000472048 1090 ntBASIC2.01□□□□□ -2.09
USF3Q68DE3 ODF2L-216ENST00000486215 311 ntTSL 2 BASIC2.01□□□□□ -2.09
USF3Q68DE3 LINC02269-201ENST00000509968 511 ntTSL 3 BASIC2.01□□□□□ -2.09
USF3Q68DE3 BMPR1B-AS1-201ENST00000510795 511 ntTSL 3 BASIC2.01□□□□□ -2.09
USF3Q68DE3 AC107222.1-201ENST00000510899 637 ntBASIC2.01□□□□□ -2.09
USF3Q68DE3 AC107886.1-201ENST00000526935 516 ntTSL 3 BASIC2.01□□□□□ -2.09
USF3Q68DE3 MTND5P21-201ENST00000531961 522 ntBASIC2.01□□□□□ -2.09
USF3Q68DE3 ERP27-202ENST00000540097 993 ntTSL 2 BASIC2.01□□□□□ -2.09
USF3Q68DE3 AC012409.1-202ENST00000558449 639 ntTSL 2 BASIC2.01□□□□□ -2.09
USF3Q68DE3 LINC00397-202ENST00000606785 409 ntTSL 5 BASIC2.01□□□□□ -2.09
USF3Q68DE3 MIR7111-201ENST00000619751 72 ntBASIC2.01□□□□□ -2.09
USF3Q68DE3 CGA-204ENST00000627148 1010 ntAPPRIS P1 TSL 1 (best) BASIC2.01□□□□□ -2.09
USF3Q68DE3 ROCK2-203ENST00000401753 4017 ntTSL 1 (best) BASIC2.01□□□□□ -2.09
USF3Q68DE3 PRKD3-201ENST00000234179 5900 ntAPPRIS P1 TSL 1 (best) BASIC2.01□□□□□ -2.09
USF3Q68DE3 AL450326.2-201ENST00000421913 1962 ntBASIC2.01□□□□□ -2.09
USF3Q68DE3 GABRG2-209ENST00000638660 3799 ntTSL 5 BASIC2.01□□□□□ -2.09
USF3Q68DE3 API5P2-201ENST00000397055 1498 ntBASIC2.01□□□□□ -2.09
USF3Q68DE3 ZNF117-204ENST00000620222 5317 ntAPPRIS P1 TSL 1 (best) BASIC2.01□□□□□ -2.09
USF3Q68DE3 SNORD114-1-201ENST00000362705 72 ntBASIC2.01□□□□□ -2.09
USF3Q68DE3 RNA5SP99-201ENST00000364020 114 ntBASIC2.01□□□□□ -2.09
USF3Q68DE3 RPS3AP26-201ENST00000398259 784 ntBASIC2.01□□□□□ -2.09
USF3Q68DE3 RPL7P10-201ENST00000417407 739 ntBASIC2.01□□□□□ -2.09
USF3Q68DE3 MTCYBP31-201ENST00000438855 1122 ntBASIC2.01□□□□□ -2.09
USF3Q68DE3 HMGN2P23-201ENST00000456759 269 ntBASIC2.01□□□□□ -2.09
USF3Q68DE3 C1orf185-202ENST00000467127 747 ntAPPRIS ALT2 TSL 3 BASIC2.01□□□□□ -2.09
USF3Q68DE3 MTND4P2-201ENST00000507767 1203 ntBASIC2.01□□□□□ -2.09
USF3Q68DE3 AC145141.1-201ENST00000510180 567 ntTSL 4 BASIC2.01□□□□□ -2.09
USF3Q68DE3 AC012055.1-201ENST00000511346 1144 ntTSL 3 BASIC2.01□□□□□ -2.09
USF3Q68DE3 RN7SKP31-201ENST00000516354 278 ntBASIC2.01□□□□□ -2.09
USF3Q68DE3 C14orf105-204ENST00000526336 598 ntTSL 4 BASIC2.01□□□□□ -2.09
USF3Q68DE3 AC005225.1-201ENST00000553394 937 ntTSL 3 BASIC2.01□□□□□ -2.09
USF3Q68DE3 AC098617.1-216ENST00000602099 708 ntTSL 5 BASIC2.01□□□□□ -2.09
USF3Q68DE3 AL356575.1-201ENST00000603008 283 ntBASIC2.01□□□□□ -2.09
USF3Q68DE3 CASC1-205ENST00000545133 2146 ntAPPRIS ALT2 TSL 2 BASIC2□□□□□ -2.09
USF3Q68DE3 ZBTB6-201ENST00000373659 4106 ntAPPRIS P1 TSL 1 (best) BASIC2□□□□□ -2.09
USF3Q68DE3 SNORA62.2-201ENST00000364672 152 ntBASIC2□□□□□ -2.09
USF3Q68DE3 GPC6-AS1-201ENST00000436329 698 ntTSL 5 BASIC2□□□□□ -2.09
USF3Q68DE3 LNX1-AS2-201ENST00000502410 347 ntTSL 5 BASIC2□□□□□ -2.09
USF3Q68DE3 AC104827.1-202ENST00000511917 1049 ntTSL 1 (best) BASIC2□□□□□ -2.09
USF3Q68DE3 AC107918.3-201ENST00000533272 382 ntBASIC2□□□□□ -2.09
USF3Q68DE3 AC007688.2-201ENST00000545158 369 ntTSL 3 BASIC2□□□□□ -2.09
USF3Q68DE3 LINC01481-201ENST00000552998 629 ntTSL 2 BASIC2□□□□□ -2.09
USF3Q68DE3 AL161896.1-201ENST00000597248 508 ntTSL 4 BASIC2□□□□□ -2.09
USF3Q68DE3 AC005858.1-201ENST00000620193 677 ntTSL 2 BASIC2□□□□□ -2.09
USF3Q68DE3 SLC35A1-205ENST00000622775 1206 ntTSL 5 BASIC2□□□□□ -2.09
USF3Q68DE3 AC067852.7-201ENST00000623270 535 ntBASIC2□□□□□ -2.09
USF3Q68DE3 SYT14P1-202ENST00000600441 1448 ntBASIC2□□□□□ -2.09
USF3Q68DE3 AC093909.5-201ENST00000621839 1799 ntBASIC2□□□□□ -2.09
USF3Q68DE3 AC121764.2-201ENST00000469806 587 ntTSL 2 BASIC1.99□□□□□ -2.09
USF3Q68DE3 AL024509.2-201ENST00000493462 493 ntBASIC1.99□□□□□ -2.09
USF3Q68DE3 ATG10-AS1-201ENST00000504846 648 ntBASIC1.99□□□□□ -2.09
USF3Q68DE3 AC026412.2-201ENST00000512270 1075 ntBASIC1.99□□□□□ -2.09
USF3Q68DE3 AC090819.1-201ENST00000523800 1111 ntBASIC1.99□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 94.4 ms