Protein–RNA interactions for Protein: Q12873

CHD3, Chromodomain-helicase-DNA-binding protein 3, humanhuman

Known RBP Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3Q12873 Z99289.1-206ENST00000425503 393 ntTSL 3 BASIC2.38□□□□□ -2.03
CHD3Q12873 AL451164.2-201ENST00000445932 597 ntTSL 2 BASIC2.38□□□□□ -2.03
CHD3Q12873 NPM1P49-201ENST00000448027 714 ntBASIC2.38□□□□□ -2.03
CHD3Q12873 AF279873.4-202ENST00000521714 511 ntTSL 2 BASIC2.38□□□□□ -2.03
CHD3Q12873 AC079089.1-202ENST00000528800 1256 ntTSL 1 (best) BASIC2.38□□□□□ -2.03
CHD3Q12873 AL049874.4-201ENST00000557593 255 ntBASIC2.38□□□□□ -2.03
CHD3Q12873 LINC01290-201ENST00000566787 502 ntTSL 2 BASIC2.38□□□□□ -2.03
CHD3Q12873 AC106734.1-201ENST00000568646 663 ntBASIC2.38□□□□□ -2.03
CHD3Q12873 AC097717.1-230ENST00000597051 738 ntTSL 3 BASIC2.38□□□□□ -2.03
CHD3Q12873 VN1R81P-201ENST00000602085 372 ntBASIC2.38□□□□□ -2.03
CHD3Q12873 AL158827.2-201ENST00000602494 330 ntBASIC2.38□□□□□ -2.03
CHD3Q12873 AL356274.1-201ENST00000617064 410 ntBASIC2.38□□□□□ -2.03
CHD3Q12873 AL691447.3-201ENST00000635020 330 ntBASIC2.38□□□□□ -2.03
CHD3Q12873 AC092593.1-201ENST00000515413 1815 ntBASIC2.38□□□□□ -2.03
CHD3Q12873 SLC27A2-203ENST00000544960 2025 ntTSL 2 BASIC2.38□□□□□ -2.03
CHD3Q12873 PYGO1-201ENST00000302000 8488 ntTSL 1 (best) BASIC2.38□□□□□ -2.03
CHD3Q12873 XPO4-202ENST00000400602 9884 ntAPPRIS ALT1 TSL 5 BASIC2.38□□□□□ -2.03
CHD3Q12873 RNA5SP68-201ENST00000363885 119 ntBASIC2.37□□□□□ -2.03
CHD3Q12873 PPP1R1C-203ENST00000409702 1157 ntAPPRIS P1 TSL 1 (best) BASIC2.37□□□□□ -2.03
CHD3Q12873 LINC00393-201ENST00000443621 282 ntTSL 3 BASIC2.37□□□□□ -2.03
CHD3Q12873 AL122008.1-201ENST00000456078 452 ntTSL 3 BASIC2.37□□□□□ -2.03
CHD3Q12873 AC109992.2-201ENST00000460977 765 ntTSL 3 BASIC2.37□□□□□ -2.03
CHD3Q12873 AC025881.1-201ENST00000518851 512 ntBASIC2.37□□□□□ -2.03
CHD3Q12873 AP001189.6-201ENST00000528781 831 ntTSL 1 (best) BASIC2.37□□□□□ -2.03
CHD3Q12873 AC243972.3-201ENST00000539655 198 ntBASIC2.37□□□□□ -2.03
CHD3Q12873 AC046158.1-201ENST00000563408 719 ntTSL 3 BASIC2.37□□□□□ -2.03
CHD3Q12873 AC016134.1-201ENST00000565259 701 ntTSL 3 BASIC2.37□□□□□ -2.03
CHD3Q12873 ATP5F1P7-201ENST00000567330 760 ntBASIC2.37□□□□□ -2.03
CHD3Q12873 AC007014.1-201ENST00000572828 610 ntTSL 3 BASIC2.37□□□□□ -2.03
CHD3Q12873 SNORD53-201ENST00000579969 78 ntBASIC2.37□□□□□ -2.03
CHD3Q12873 CEP164P1-207ENST00000608660 504 ntTSL 5 BASIC2.37□□□□□ -2.03
CHD3Q12873 AC123768.3-201ENST00000613733 523 ntTSL 3 BASIC2.37□□□□□ -2.03
CHD3Q12873 ATM-230ENST00000640388 578 ntTSL 5 BASIC2.37□□□□□ -2.03
CHD3Q12873 NEBL-202ENST00000377122 9216 ntTSL 1 (best) BASIC2.37□□□□□ -2.03
CHD3Q12873 CNOT6LP1-201ENST00000559681 1462 ntBASIC2.37□□□□□ -2.03
CHD3Q12873 CLCA4-201ENST00000370563 3211 ntAPPRIS P1 TSL 1 (best) BASIC2.37□□□□□ -2.03
CHD3Q12873 AC007256.1-201ENST00000392253 2765 ntBASIC2.37□□□□□ -2.03
CHD3Q12873 RNU6-167P-201ENST00000384292 106 ntBASIC2.37□□□□□ -2.03
CHD3Q12873 CCNB2P1-201ENST00000399411 1150 ntBASIC2.37□□□□□ -2.03
CHD3Q12873 AL355379.1-201ENST00000405542 640 ntBASIC2.37□□□□□ -2.03
CHD3Q12873 AC024084.1-201ENST00000440744 455 ntTSL 5 BASIC2.37□□□□□ -2.03
CHD3Q12873 AC044781.1-201ENST00000446193 570 ntTSL 3 BASIC2.37□□□□□ -2.03
CHD3Q12873 GYPA-203ENST00000503627 318 ntTSL 1 (best) BASIC2.37□□□□□ -2.03
CHD3Q12873 RNU6-56P-201ENST00000516986 93 ntBASIC2.37□□□□□ -2.03
CHD3Q12873 AL355432.1-201ENST00000522960 564 ntTSL 3 BASIC2.37□□□□□ -2.03
CHD3Q12873 MAL2-203ENST00000534619 578 ntTSL 4 BASIC2.37□□□□□ -2.03
CHD3Q12873 AC009163.5-201ENST00000575421 637 ntBASIC2.37□□□□□ -2.03
CHD3Q12873 AC009977.1-201ENST00000586015 570 ntBASIC2.37□□□□□ -2.03
CHD3Q12873 TPMTP1-201ENST00000592307 737 ntBASIC2.37□□□□□ -2.03
CHD3Q12873 AC107398.4-201ENST00000635489 765 ntTSL 2 BASIC2.37□□□□□ -2.03
CHD3Q12873 METTL8-218ENST00000638989 876 ntTSL 5 BASIC2.37□□□□□ -2.03
CHD3Q12873 METTL8-219ENST00000640734 726 ntTSL 2 BASIC2.37□□□□□ -2.03
CHD3Q12873 ERBIN-204ENST00000380943 6410 ntAPPRIS P3 TSL 1 (best) BASIC2.37□□□□□ -2.03
CHD3Q12873 SAMD9-201ENST00000379958 6852 ntAPPRIS P1 TSL 1 (best) BASIC2.37□□□□□ -2.03
CHD3Q12873 CCDC30-203ENST00000428554 3063 ntAPPRIS P2 TSL 5 BASIC2.37□□□□□ -2.03
CHD3Q12873 DTHD1-205ENST00000507598 2606 ntTSL 1 (best) BASIC2.36□□□□□ -2.03
CHD3Q12873 OR5V1-217ENST00000641768 2763 ntAPPRIS P1 BASIC2.36□□□□□ -2.03
CHD3Q12873 KRTAP27-1-201ENST00000382835 682 ntAPPRIS P1 BASIC2.36□□□□□ -2.03
CHD3Q12873 AL355388.1-201ENST00000415726 401 ntTSL 2 BASIC2.36□□□□□ -2.03
CHD3Q12873 AC007403.1-201ENST00000427579 567 ntTSL 4 BASIC2.36□□□□□ -2.03
CHD3Q12873 LAMTOR5P1-201ENST00000444290 270 ntBASIC2.36□□□□□ -2.03
CHD3Q12873 AC126121.1-201ENST00000482313 553 ntBASIC2.36□□□□□ -2.03
CHD3Q12873 RN7SL297P-201ENST00000483161 293 ntBASIC2.36□□□□□ -2.03
CHD3Q12873 THAP6-212ENST00000508105 1103 ntTSL 1 (best) BASIC2.36□□□□□ -2.03
CHD3Q12873 AC098799.2-201ENST00000509466 868 ntBASIC2.36□□□□□ -2.03
CHD3Q12873 PANCR-202ENST00000513690 448 ntTSL 2 BASIC2.36□□□□□ -2.03
CHD3Q12873 AC009597.1-201ENST00000521215 584 ntTSL 4 BASIC2.36□□□□□ -2.03
CHD3Q12873 EEF1A1P37-201ENST00000522748 715 ntBASIC2.36□□□□□ -2.03
CHD3Q12873 LINC02545-201ENST00000525381 306 ntTSL 3 BASIC2.36□□□□□ -2.03
CHD3Q12873 MS4A1-205ENST00000528313 928 ntTSL 2 BASIC2.36□□□□□ -2.03
CHD3Q12873 ZNF28-207ENST00000594602 684 ntTSL 5 BASIC2.36□□□□□ -2.03
CHD3Q12873 AC025754.2-201ENST00000606491 432 ntBASIC2.36□□□□□ -2.03
CHD3Q12873 AC019131.2-201ENST00000609071 870 ntBASIC2.36□□□□□ -2.03
CHD3Q12873 AC145207.9-201ENST00000623802 325 ntBASIC2.36□□□□□ -2.03
CHD3Q12873 AC090617.7-201ENST00000623952 126 ntBASIC2.36□□□□□ -2.03
CHD3Q12873 ZCCHC10-202ENST00000355372 2160 ntAPPRIS ALT2 TSL 2 BASIC2.36□□□□□ -2.03
CHD3Q12873 PLS1-201ENST00000337777 3755 ntAPPRIS P1 TSL 1 (best) BASIC2.36□□□□□ -2.03
CHD3Q12873 POLK-204ENST00000504026 1484 ntTSL 1 (best) BASIC2.36□□□□□ -2.03
CHD3Q12873 HSFY1-202ENST00000309834 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC2.35□□□□□ -2.03
CHD3Q12873 OR6C76-201ENST00000328314 939 ntAPPRIS P1 BASIC2.35□□□□□ -2.03
CHD3Q12873 ZNF66-201ENST00000344519 1745 ntAPPRIS P1 TSL 3 BASIC2.35□□□□□ -2.03
CHD3Q12873 HSFY2-202ENST00000344884 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC2.35□□□□□ -2.03
CHD3Q12873 RNU6-356P-201ENST00000384140 107 ntBASIC2.35□□□□□ -2.03
CHD3Q12873 RPL31P52-201ENST00000407532 367 ntBASIC2.35□□□□□ -2.03
CHD3Q12873 YPEL5P1-201ENST00000419731 367 ntBASIC2.35□□□□□ -2.03
CHD3Q12873 VDAC1P3-201ENST00000434069 851 ntBASIC2.35□□□□□ -2.03
CHD3Q12873 AP000936.2-201ENST00000447151 681 ntBASIC2.35□□□□□ -2.03
CHD3Q12873 GSTA11P-201ENST00000452866 669 ntBASIC2.35□□□□□ -2.03
CHD3Q12873 AC000061.1-201ENST00000456270 376 ntTSL 3 BASIC2.35□□□□□ -2.03
CHD3Q12873 MDM2-217ENST00000478070 692 ntTSL 1 (best) BASIC2.35□□□□□ -2.03
CHD3Q12873 AC091887.1-201ENST00000514002 439 ntTSL 5 BASIC2.35□□□□□ -2.03
CHD3Q12873 NPM1P52-201ENST00000518264 846 ntBASIC2.35□□□□□ -2.03
CHD3Q12873 AP000873.5-201ENST00000533906 236 ntBASIC2.35□□□□□ -2.03
CHD3Q12873 KLRF2-201ENST00000535540 731 ntAPPRIS P1 TSL 1 (best) BASIC2.35□□□□□ -2.03
CHD3Q12873 AC079362.1-201ENST00000546865 525 ntTSL 3 BASIC2.35□□□□□ -2.03
CHD3Q12873 AC005046.1-201ENST00000608515 625 ntBASIC2.35□□□□□ -2.03
CHD3Q12873 AL592494.3-201ENST00000609485 464 ntBASIC2.35□□□□□ -2.03
CHD3Q12873 AL359198.2-201ENST00000611836 194 ntBASIC2.35□□□□□ -2.03
CHD3Q12873 CDKN2B-AS.1-201ENST00000617921 150 ntBASIC2.35□□□□□ -2.03
CHD3Q12873 AL133370.2-201ENST00000619934 439 ntBASIC2.35□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 99.2 ms