Protein–RNA interactions for Protein: Q01955

COL4A3, Collagen alpha-3(IV) chain, humanhuman

Predictions only

Length 1,670 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3Q01955 IMMP2L-205ENST00000450877 761 ntTSL 2 BASIC4.48□□□□□ -1.69
COL4A3Q01955 C1DP4-201ENST00000455429 424 ntBASIC4.48□□□□□ -1.69
COL4A3Q01955 BTF3P5-201ENST00000457252 467 ntBASIC4.48□□□□□ -1.69
COL4A3Q01955 AC108751.2-201ENST00000469993 231 ntBASIC4.48□□□□□ -1.69
COL4A3Q01955 PLCH1-AS2-201ENST00000472913 408 ntTSL 2 BASIC4.48□□□□□ -1.69
COL4A3Q01955 CSN1S1-202ENST00000505782 871 ntAPPRIS ALT2 TSL 5 BASIC4.48□□□□□ -1.69
COL4A3Q01955 CSN1S1-204ENST00000507772 895 ntAPPRIS ALT2 TSL 5 BASIC4.48□□□□□ -1.69
COL4A3Q01955 ADGRL3-AS1-204ENST00000509461 481 ntTSL 5 BASIC4.48□□□□□ -1.69
COL4A3Q01955 FGF7P4-201ENST00000509595 295 ntBASIC4.48□□□□□ -1.69
COL4A3Q01955 CTD-2350J17.1-202ENST00000510456 360 ntTSL 2 BASIC4.48□□□□□ -1.69
COL4A3Q01955 RNU6-445P-201ENST00000516949 107 ntBASIC4.48□□□□□ -1.69
COL4A3Q01955 LYRM2-203ENST00000520318 677 ntTSL 2 BASIC4.48□□□□□ -1.69
COL4A3Q01955 AC021736.1-201ENST00000521143 563 ntTSL 4 BASIC4.48□□□□□ -1.69
COL4A3Q01955 AC073172.2-201ENST00000527770 571 ntTSL 4 BASIC4.48□□□□□ -1.69
COL4A3Q01955 LINC02390-201ENST00000541404 560 ntTSL 4 BASIC4.48□□□□□ -1.69
COL4A3Q01955 AP003781.1-201ENST00000543403 404 ntTSL 3 BASIC4.48□□□□□ -1.69
COL4A3Q01955 AC008083.1-201ENST00000547748 663 ntTSL 2 BASIC4.48□□□□□ -1.69
COL4A3Q01955 AC009803.2-201ENST00000550378 665 ntTSL 5 BASIC4.48□□□□□ -1.69
COL4A3Q01955 LINC02301-203ENST00000555798 789 ntTSL 3 BASIC4.48□□□□□ -1.69
COL4A3Q01955 AC009852.2-201ENST00000567898 485 ntBASIC4.48□□□□□ -1.69
COL4A3Q01955 HMGN1P30-201ENST00000589286 268 ntBASIC4.48□□□□□ -1.69
COL4A3Q01955 AP000942.4-201ENST00000604811 241 ntBASIC4.48□□□□□ -1.69
COL4A3Q01955 AL136363.1-201ENST00000605349 337 ntBASIC4.48□□□□□ -1.69
COL4A3Q01955 MIR7151-201ENST00000617477 60 ntBASIC4.48□□□□□ -1.69
COL4A3Q01955 AC022106.2-201ENST00000620114 757 ntBASIC4.48□□□□□ -1.69
COL4A3Q01955 RAPGEF2-201ENST00000264431 6949 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
COL4A3Q01955 TLR8-201ENST00000218032 4216 ntAPPRIS ALT2 TSL 1 (best) BASIC4.47□□□□□ -1.69
COL4A3Q01955 ORC4-202ENST00000392857 6530 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
COL4A3Q01955 FAM91A3P-201ENST00000456826 2544 ntBASIC4.47□□□□□ -1.69
COL4A3Q01955 SLC25A46-206ENST00000509432 1596 ntTSL 2 BASIC4.47□□□□□ -1.69
COL4A3Q01955 C12orf60-201ENST00000330828 1684 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
COL4A3Q01955 IQCH-214ENST00000629425 1822 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
COL4A3Q01955 SCN1A-203ENST00000409050 5946 ntTSL 5 BASIC4.47□□□□□ -1.69
COL4A3Q01955 AC107021.2-201ENST00000567714 2095 ntBASIC4.47□□□□□ -1.69
COL4A3Q01955 LINC00630-205ENST00000440496 2101 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
COL4A3Q01955 ADGRL2-206ENST00000370721 5023 ntTSL 5 BASIC4.47□□□□□ -1.69
COL4A3Q01955 TM4SF20-201ENST00000304568 2296 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
COL4A3Q01955 PNLIPRP3-201ENST00000369230 2354 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
COL4A3Q01955 USP45-204ENST00000369233 2514 ntTSL 5 BASIC4.47□□□□□ -1.69
COL4A3Q01955 MUC17-201ENST00000306151 14247 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
COL4A3Q01955 AC004803.1-201ENST00000503602 3207 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
COL4A3Q01955 CNTN1-202ENST00000348761 3328 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
COL4A3Q01955 Y_RNA.86-201ENST00000363020 111 ntBASIC4.47□□□□□ -1.69
COL4A3Q01955 RNU6-1151P-201ENST00000384684 107 ntBASIC4.47□□□□□ -1.69
COL4A3Q01955 AL592291.1-201ENST00000403830 352 ntBASIC4.47□□□□□ -1.69
COL4A3Q01955 AC004946.1-201ENST00000421825 751 ntTSL 3 BASIC4.47□□□□□ -1.69
COL4A3Q01955 LINC01074-201ENST00000422527 555 ntTSL 3 BASIC4.47□□□□□ -1.69
COL4A3Q01955 AC073069.1-201ENST00000428657 441 ntBASIC4.47□□□□□ -1.69
COL4A3Q01955 AC005828.1-201ENST00000431604 524 ntTSL 5 BASIC4.47□□□□□ -1.69
COL4A3Q01955 AL139289.1-201ENST00000436713 731 ntTSL 3 BASIC4.47□□□□□ -1.69
COL4A3Q01955 RPL7P54-201ENST00000438336 674 ntBASIC4.47□□□□□ -1.69
COL4A3Q01955 RPL22P17-201ENST00000438729 315 ntBASIC4.47□□□□□ -1.69
COL4A3Q01955 AL157882.1-201ENST00000447148 429 ntTSL 3 BASIC4.47□□□□□ -1.69
COL4A3Q01955 ARPC3P5-201ENST00000448802 534 ntBASIC4.47□□□□□ -1.69
COL4A3Q01955 AC092620.2-201ENST00000458007 744 ntTSL 2 BASIC4.47□□□□□ -1.69
COL4A3Q01955 RPL39P36-201ENST00000490784 156 ntBASIC4.47□□□□□ -1.69
COL4A3Q01955 AL359273.1-202ENST00000505585 905 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
COL4A3Q01955 AC100782.1-201ENST00000520778 590 ntTSL 3 BASIC4.47□□□□□ -1.69
COL4A3Q01955 THUMPD3-AS1-215ENST00000521609 793 ntTSL 5 BASIC4.47□□□□□ -1.69
COL4A3Q01955 HSPA8P13-201ENST00000523715 472 ntBASIC4.47□□□□□ -1.69
COL4A3Q01955 AC007368.1-201ENST00000536422 974 ntTSL 5 BASIC4.47□□□□□ -1.69
COL4A3Q01955 ZNF28-207ENST00000594602 684 ntTSL 5 BASIC4.47□□□□□ -1.69
COL4A3Q01955 AL035413.2-201ENST00000604801 525 ntBASIC4.47□□□□□ -1.69
COL4A3Q01955 AC012468.1-201ENST00000604888 430 ntBASIC4.47□□□□□ -1.69
COL4A3Q01955 AC007179.3-201ENST00000604976 235 ntBASIC4.47□□□□□ -1.69
COL4A3Q01955 AP001521.1-201ENST00000609150 300 ntBASIC4.47□□□□□ -1.69
COL4A3Q01955 AC243829.4-202ENST00000610845 410 ntTSL 5 BASIC4.47□□□□□ -1.69
COL4A3Q01955 AC019278.1-201ENST00000623516 479 ntBASIC4.47□□□□□ -1.69
COL4A3Q01955 AL136164.3-201ENST00000624429 3978 ntBASIC4.47□□□□□ -1.69
COL4A3Q01955 MDN1-205ENST00000629399 17400 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
COL4A3Q01955 SLC17A1-204ENST00000476801 1704 ntAPPRIS P1 TSL 2 BASIC4.47□□□□□ -1.69
COL4A3Q01955 LINC01689-201ENST00000416218 2007 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
COL4A3Q01955 NTRK3-205ENST00000394480 19984 ntAPPRIS P3 TSL 5 BASIC4.47□□□□□ -1.69
COL4A3Q01955 ANK3-201ENST00000280772 16874 ntAPPRIS P3 TSL 1 (best) BASIC4.47□□□□□ -1.69
COL4A3Q01955 CCDC102B-201ENST00000360242 2711 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
COL4A3Q01955 HERC4-205ENST00000412272 4211 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
COL4A3Q01955 SCN1A-217ENST00000637988 8562 ntAPPRIS P3 TSL 5 BASIC4.46□□□□□ -1.69
COL4A3Q01955 LYRM2-208ENST00000523377 5353 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.69
COL4A3Q01955 SLC17A4-201ENST00000377905 3616 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.69
COL4A3Q01955 NBPF14-206ENST00000614999 10080 ntTSL 5 BASIC4.46□□□□□ -1.69
COL4A3Q01955 RWDD2B-207ENST00000493196 3094 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
COL4A3Q01955 UTS2B-201ENST00000340524 2395 ntAPPRIS P1 TSL 2 BASIC4.46□□□□□ -1.7
COL4A3Q01955 SFT2D2-201ENST00000271375 11040 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
COL4A3Q01955 THOC1-219ENST00000616322 2078 ntAPPRIS ALT1 TSL 5 BASIC4.46□□□□□ -1.7
COL4A3Q01955 SULF1-204ENST00000458141 5551 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
COL4A3Q01955 OR11H5P-202ENST00000641612 1325 ntBASIC4.46□□□□□ -1.7
COL4A3Q01955 RNU6-1322P-201ENST00000364309 107 ntBASIC4.46□□□□□ -1.7
COL4A3Q01955 MIR3065-201ENST00000390137 79 ntBASIC4.46□□□□□ -1.7
COL4A3Q01955 EEF1E1-BLOC1S5-201ENST00000397456 768 ntAPPRIS P1 TSL 3 BASIC4.46□□□□□ -1.7
COL4A3Q01955 ZNF788-202ENST00000397759 777 ntAPPRIS P1 TSL 5 BASIC4.46□□□□□ -1.7
COL4A3Q01955 AL121972.1-201ENST00000402023 252 ntBASIC4.46□□□□□ -1.7
COL4A3Q01955 MIR1271-201ENST00000408537 86 ntBASIC4.46□□□□□ -1.7
COL4A3Q01955 RPL7P2-201ENST00000427639 268 ntBASIC4.46□□□□□ -1.7
COL4A3Q01955 AL591473.1-201ENST00000464297 313 ntBASIC4.46□□□□□ -1.7
COL4A3Q01955 RPL29-203ENST00000475248 551 ntAPPRIS P1 TSL 3 BASIC4.46□□□□□ -1.7
COL4A3Q01955 AC023194.1-201ENST00000493084 308 ntBASIC4.46□□□□□ -1.7
COL4A3Q01955 AC079340.1-201ENST00000504799 552 ntTSL 4 BASIC4.46□□□□□ -1.7
COL4A3Q01955 AC114967.1-201ENST00000504890 259 ntBASIC4.46□□□□□ -1.7
COL4A3Q01955 AC005920.2-201ENST00000509833 332 ntTSL 3 BASIC4.46□□□□□ -1.7
COL4A3Q01955 AC022390.1-201ENST00000517854 434 ntTSL 3 BASIC4.46□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 77.4 ms