Protein–RNA interactions for Protein: Q00056

HOXA4, Homeobox protein Hox-A4, humanhuman

Predicted RBP Predictions only

Length 320 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA4Q00056 AC015908.5-201ENST00000623289 343 ntBASIC4□□□□□ -1.77
HOXA4Q00056 AC024614.3-201ENST00000637860 256 ntBASIC4□□□□□ -1.77
HOXA4Q00056 TRAPPC13-208ENST00000505553 1410 ntAPPRIS ALT1 TSL 1 (best) BASIC4□□□□□ -1.77
HOXA4Q00056 ASTE1-208ENST00000514044 2504 ntTSL 1 (best) BASIC4□□□□□ -1.77
HOXA4Q00056 SGO1-205ENST00000419233 1582 ntTSL 1 (best) BASIC4□□□□□ -1.77
HOXA4Q00056 ZNF639-206ENST00000484866 1730 ntAPPRIS P1 TSL 2 BASIC4□□□□□ -1.77
HOXA4Q00056 SRRM1-203ENST00000447431 3691 ntAPPRIS ALT2 TSL 5 BASIC4□□□□□ -1.77
HOXA4Q00056 ANKRD20A10P-201ENST00000457591 1515 ntBASIC4□□□□□ -1.77
HOXA4Q00056 CEP192-201ENST00000325971 7764 ntTSL 5 BASIC4□□□□□ -1.77
HOXA4Q00056 CHD9-221ENST00000615216 10603 ntTSL 5 BASIC4□□□□□ -1.77
HOXA4Q00056 MEG8-223ENST00000638012 3757 ntTSL 5 BASIC4□□□□□ -1.77
HOXA4Q00056 CARF-203ENST00000414439 2099 ntTSL 2 BASIC3.99□□□□□ -1.77
HOXA4Q00056 AC092329.3-201ENST00000611392 1904 ntAPPRIS P1 TSL 5 BASIC3.99□□□□□ -1.77
HOXA4Q00056 AC093591.2-201ENST00000565254 3843 ntBASIC3.99□□□□□ -1.77
HOXA4Q00056 DMD-207ENST00000378677 13932 ntAPPRIS ALT2 TSL 5 BASIC3.99□□□□□ -1.77
HOXA4Q00056 CENPE-208ENST00000611174 8260 ntTSL 5 BASIC3.99□□□□□ -1.77
HOXA4Q00056 AC007529.1-201ENST00000418574 2178 ntBASIC3.99□□□□□ -1.77
HOXA4Q00056 AC027228.2-201ENST00000567141 2154 ntBASIC3.99□□□□□ -1.77
HOXA4Q00056 TNFSF18-201ENST00000404377 2008 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
HOXA4Q00056 PUS7L-203ENST00000431332 1873 ntTSL 2 BASIC3.99□□□□□ -1.77
HOXA4Q00056 C9orf153-204ENST00000613665 1738 ntAPPRIS P2 TSL 2 BASIC3.99□□□□□ -1.77
HOXA4Q00056 RNU6-146P-201ENST00000384602 108 ntBASIC3.99□□□□□ -1.77
HOXA4Q00056 ENSAP1-201ENST00000392855 326 ntBASIC3.99□□□□□ -1.77
HOXA4Q00056 CYB5AP4-201ENST00000396692 399 ntBASIC3.99□□□□□ -1.77
HOXA4Q00056 RNU2-15P-201ENST00000410692 191 ntBASIC3.99□□□□□ -1.77
HOXA4Q00056 RN7SKP100-201ENST00000411258 284 ntBASIC3.99□□□□□ -1.77
HOXA4Q00056 AC007738.1-201ENST00000413892 348 ntBASIC3.99□□□□□ -1.77
HOXA4Q00056 TRAPPC2P10-201ENST00000415662 323 ntBASIC3.99□□□□□ -1.77
HOXA4Q00056 AL451107.1-201ENST00000416310 408 ntTSL 2 BASIC3.99□□□□□ -1.77
HOXA4Q00056 AL445989.1-202ENST00000418943 776 ntTSL 2 BASIC3.99□□□□□ -1.77
HOXA4Q00056 AL358176.3-201ENST00000420757 454 ntBASIC3.99□□□□□ -1.77
HOXA4Q00056 RPL12P34-201ENST00000424532 479 ntBASIC3.99□□□□□ -1.77
HOXA4Q00056 CKS1BP6-201ENST00000424932 240 ntBASIC3.99□□□□□ -1.77
HOXA4Q00056 AL122034.1-201ENST00000427609 497 ntTSL 2 BASIC3.99□□□□□ -1.77
HOXA4Q00056 AL589986.2-201ENST00000429352 397 ntTSL 2 BASIC3.99□□□□□ -1.77
HOXA4Q00056 RPL23AP30-201ENST00000432419 501 ntBASIC3.99□□□□□ -1.77
HOXA4Q00056 AL121974.1-201ENST00000437859 377 ntTSL 3 BASIC3.99□□□□□ -1.77
HOXA4Q00056 AL136972.1-201ENST00000443471 351 ntTSL 3 BASIC3.99□□□□□ -1.77
HOXA4Q00056 TDGF1P1-201ENST00000445734 527 ntBASIC3.99□□□□□ -1.77
HOXA4Q00056 SDCBP-205ENST00000447267 772 ntTSL 3 BASIC3.99□□□□□ -1.77
HOXA4Q00056 AP001439.1-201ENST00000455275 392 ntTSL 2 BASIC3.99□□□□□ -1.77
HOXA4Q00056 AL589765.1-201ENST00000457548 386 ntTSL 2 BASIC3.99□□□□□ -1.77
HOXA4Q00056 PMCHL2-203ENST00000457791 237 ntBASIC3.99□□□□□ -1.77
HOXA4Q00056 AC087385.1-201ENST00000475062 312 ntBASIC3.99□□□□□ -1.77
HOXA4Q00056 AC021382.1-201ENST00000483523 359 ntBASIC3.99□□□□□ -1.77
HOXA4Q00056 AC020893.1-201ENST00000502452 580 ntBASIC3.99□□□□□ -1.77
HOXA4Q00056 AK3P4-201ENST00000504283 583 ntBASIC3.99□□□□□ -1.77
HOXA4Q00056 AC011389.1-201ENST00000509170 594 ntTSL 4 BASIC3.99□□□□□ -1.77
HOXA4Q00056 RNA5SP228-201ENST00000516232 133 ntBASIC3.99□□□□□ -1.77
HOXA4Q00056 AC090572.1-201ENST00000519251 160 ntBASIC3.99□□□□□ -1.77
HOXA4Q00056 IGLVIV-53-201ENST00000520107 367 ntBASIC3.99□□□□□ -1.77
HOXA4Q00056 CENPUP1-201ENST00000526649 1202 ntBASIC3.99□□□□□ -1.77
HOXA4Q00056 OR4P1P-201ENST00000530808 1136 ntBASIC3.99□□□□□ -1.77
HOXA4Q00056 AC068993.1-201ENST00000546724 589 ntBASIC3.99□□□□□ -1.77
HOXA4Q00056 AC069437.1-201ENST00000551372 512 ntTSL 4 BASIC3.99□□□□□ -1.77
HOXA4Q00056 AL109766.1-201ENST00000555080 552 ntBASIC3.99□□□□□ -1.77
HOXA4Q00056 AL110505.1-201ENST00000557062 522 ntTSL 3 BASIC3.99□□□□□ -1.77
HOXA4Q00056 PWRN1-202ENST00000562501 642 ntTSL 3 BASIC3.99□□□□□ -1.77
HOXA4Q00056 AC005899.1-201ENST00000584125 563 ntTSL 5 BASIC3.99□□□□□ -1.77
HOXA4Q00056 AC011477.5-201ENST00000586571 259 ntBASIC3.99□□□□□ -1.77
HOXA4Q00056 PPP3CB-AS1-206ENST00000595935 675 ntTSL 5 BASIC3.99□□□□□ -1.77
HOXA4Q00056 AC087283.1-201ENST00000604029 1074 ntBASIC3.99□□□□□ -1.77
HOXA4Q00056 AL158211.4-201ENST00000606988 584 ntBASIC3.99□□□□□ -1.77
HOXA4Q00056 PRKCQ-AS1-207ENST00000607996 531 ntTSL 5 BASIC3.99□□□□□ -1.77
HOXA4Q00056 AL049539.1-201ENST00000611964 459 ntBASIC3.99□□□□□ -1.77
HOXA4Q00056 AC243585.1-201ENST00000617867 607 ntTSL 3 BASIC3.99□□□□□ -1.77
HOXA4Q00056 AC138393.3-201ENST00000618397 573 ntTSL 3 BASIC3.99□□□□□ -1.77
HOXA4Q00056 THRA1/BTR-204ENST00000621191 513 ntTSL 5 BASIC3.99□□□□□ -1.77
HOXA4Q00056 YWHAEP7-203ENST00000622054 312 ntBASIC3.99□□□□□ -1.77
HOXA4Q00056 AP003122.6-201ENST00000623831 495 ntBASIC3.99□□□□□ -1.77
HOXA4Q00056 RPS4Y2-201ENST00000629237 792 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
HOXA4Q00056 HELLS-204ENST00000371332 2675 ntTSL 5 BASIC3.99□□□□□ -1.77
HOXA4Q00056 KATNAL1-201ENST00000380615 7551 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
HOXA4Q00056 DDR2-202ENST00000367922 10160 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
HOXA4Q00056 C1orf112-202ENST00000359326 4002 ntAPPRIS P3 TSL 1 (best) BASIC3.99□□□□□ -1.77
HOXA4Q00056 NCOA1-202ENST00000348332 6895 ntAPPRIS P4 TSL 1 (best) BASIC3.99□□□□□ -1.77
HOXA4Q00056 TDRD3-204ENST00000377894 2484 ntTSL 2 BASIC3.99□□□□□ -1.77
HOXA4Q00056 ZNF254-202ENST00000357002 3967 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
HOXA4Q00056 TUG1-201ENST00000519077 5673 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
HOXA4Q00056 PSMA4-201ENST00000044462 4411 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
HOXA4Q00056 HSD17B11-201ENST00000358290 1885 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
HOXA4Q00056 ADAM29-214ENST00000618444 2949 ntAPPRIS P1 TSL 4 BASIC3.98□□□□□ -1.77
HOXA4Q00056 GABRA2-202ENST00000381620 2525 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
HOXA4Q00056 TECRL-201ENST00000381210 3573 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
HOXA4Q00056 TPTE2-203ENST00000390680 1558 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
HOXA4Q00056 AC092326.2-201ENST00000624772 1561 ntBASIC3.98□□□□□ -1.77
HOXA4Q00056 AC091046.3-201ENST00000631455 1574 ntBASIC3.98□□□□□ -1.77
HOXA4Q00056 GAS2L3-202ENST00000537247 2742 ntTSL 2 BASIC3.98□□□□□ -1.77
HOXA4Q00056 Y_RNA.11-201ENST00000362375 109 ntBASIC3.98□□□□□ -1.77
HOXA4Q00056 RNU6-1120P-201ENST00000362988 108 ntBASIC3.98□□□□□ -1.77
HOXA4Q00056 TMLHE-202ENST00000369439 1248 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
HOXA4Q00056 OR51I1-201ENST00000380211 945 ntAPPRIS P1 BASIC3.98□□□□□ -1.77
HOXA4Q00056 RNU6-1158P-201ENST00000391167 107 ntBASIC3.98□□□□□ -1.77
HOXA4Q00056 RRM2B-203ENST00000395912 900 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
HOXA4Q00056 MIR937-201ENST00000401271 86 ntBASIC3.98□□□□□ -1.77
HOXA4Q00056 RN7SKP106-201ENST00000410832 272 ntBASIC3.98□□□□□ -1.77
HOXA4Q00056 AC093865.1-201ENST00000415387 433 ntTSL 3 BASIC3.98□□□□□ -1.77
HOXA4Q00056 MRPL50P2-201ENST00000416821 482 ntBASIC3.98□□□□□ -1.77
HOXA4Q00056 AL807761.1-201ENST00000417622 171 ntBASIC3.98□□□□□ -1.77
HOXA4Q00056 ELOCP4-201ENST00000420090 333 ntBASIC3.98□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 77 ms