Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 AC011008.1-201ENST00000522026 439 ntTSL 3 BASIC2.9□□□□□ -1.95
COL5A3P25940 OR5BN1P-201ENST00000532955 829 ntBASIC2.9□□□□□ -1.95
COL5A3P25940 AC074029.1-201ENST00000552531 1044 ntBASIC2.9□□□□□ -1.95
COL5A3P25940 SNRPGP18-201ENST00000553000 214 ntBASIC2.9□□□□□ -1.95
COL5A3P25940 AC022655.1-201ENST00000578039 288 ntTSL 3 BASIC2.9□□□□□ -1.95
COL5A3P25940 AL161896.1-201ENST00000597248 508 ntTSL 4 BASIC2.9□□□□□ -1.95
COL5A3P25940 AC103710.3-201ENST00000608157 948 ntBASIC2.9□□□□□ -1.95
COL5A3P25940 AC092184.1-201ENST00000625042 715 ntBASIC2.9□□□□□ -1.95
COL5A3P25940 AC117529.2-201ENST00000512159 2068 ntBASIC2.89□□□□□ -1.95
COL5A3P25940 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC2.89□□□□□ -1.95
COL5A3P25940 HTR2B-201ENST00000258400 2246 ntAPPRIS P1 TSL 1 (best) BASIC2.89□□□□□ -1.95
COL5A3P25940 PCM1-222ENST00000524226 5955 ntTSL 1 (best) BASIC2.89□□□□□ -1.95
COL5A3P25940 C6orf10-204ENST00000447241 2148 ntAPPRIS P3 TSL 5 BASIC2.89□□□□□ -1.95
COL5A3P25940 Y_RNA.118-201ENST00000363300 101 ntBASIC2.89□□□□□ -1.95
COL5A3P25940 U8.13-201ENST00000390842 128 ntBASIC2.89□□□□□ -1.95
COL5A3P25940 RNU6-328P-201ENST00000390887 106 ntBASIC2.89□□□□□ -1.95
COL5A3P25940 AC107081.1-201ENST00000414975 361 ntBASIC2.89□□□□□ -1.95
COL5A3P25940 RPL31P45-201ENST00000419532 356 ntBASIC2.89□□□□□ -1.95
COL5A3P25940 NDUFS5P3-201ENST00000450668 321 ntBASIC2.89□□□□□ -1.95
COL5A3P25940 AC025181.1-201ENST00000477507 416 ntBASIC2.89□□□□□ -1.95
COL5A3P25940 AP000926.1-201ENST00000479573 241 ntBASIC2.89□□□□□ -1.95
COL5A3P25940 AC007876.1-201ENST00000527562 983 ntTSL 1 (best) BASIC2.89□□□□□ -1.95
COL5A3P25940 AC018630.1-201ENST00000541376 925 ntBASIC2.89□□□□□ -1.95
COL5A3P25940 NR2F2-AS1-211ENST00000561402 589 ntTSL 3 BASIC2.89□□□□□ -1.95
COL5A3P25940 AC025281.1-201ENST00000567026 265 ntBASIC2.89□□□□□ -1.95
COL5A3P25940 WFDC11-203ENST00000618797 561 ntAPPRIS P1 TSL 5 BASIC2.89□□□□□ -1.95
COL5A3P25940 AP003072.5-201ENST00000623872 773 ntBASIC2.89□□□□□ -1.95
COL5A3P25940 PRRG1-202ENST00000449135 4481 ntAPPRIS P1 TSL 1 (best) BASIC2.89□□□□□ -1.95
COL5A3P25940 OR8K3-204ENST00000641689 2380 ntAPPRIS P1 BASIC2.88□□□□□ -1.95
COL5A3P25940 Y_RNA.40-201ENST00000362645 93 ntBASIC2.88□□□□□ -1.95
COL5A3P25940 AC010745.4-201ENST00000420130 740 ntTSL 5 BASIC2.88□□□□□ -1.95
COL5A3P25940 RPS24P8-201ENST00000431490 402 ntBASIC2.88□□□□□ -1.95
COL5A3P25940 RPL36AP33-201ENST00000450395 310 ntBASIC2.88□□□□□ -1.95
COL5A3P25940 MTCO3P11-201ENST00000455103 774 ntBASIC2.88□□□□□ -1.95
COL5A3P25940 TRBV1-201ENST00000476502 284 ntBASIC2.88□□□□□ -1.95
COL5A3P25940 AC008696.2-201ENST00000503323 825 ntTSL 3 BASIC2.88□□□□□ -1.95
COL5A3P25940 AC111000.5-201ENST00000506559 1178 ntBASIC2.88□□□□□ -1.95
COL5A3P25940 AP003465.1-201ENST00000520575 382 ntTSL 2 BASIC2.88□□□□□ -1.95
COL5A3P25940 AC134043.1-201ENST00000521204 638 ntTSL 3 BASIC2.88□□□□□ -1.95
COL5A3P25940 AL139317.3-202ENST00000555689 528 ntTSL 5 BASIC2.88□□□□□ -1.95
COL5A3P25940 ADAM3B-201ENST00000569937 840 ntBASIC2.88□□□□□ -1.95
COL5A3P25940 BX664608.1-201ENST00000610519 487 ntBASIC2.88□□□□□ -1.95
COL5A3P25940 AC069234.5-201ENST00000611056 416 ntBASIC2.88□□□□□ -1.95
COL5A3P25940 CCDC178-205ENST00000406524 3039 ntAPPRIS ALT2 TSL 5 BASIC2.88□□□□□ -1.95
COL5A3P25940 MS4A14-202ENST00000395001 3401 ntTSL 5 BASIC2.88□□□□□ -1.95
COL5A3P25940 FKTN-204ENST00000448551 1700 ntTSL 2 BASIC2.88□□□□□ -1.95
COL5A3P25940 XRN1-202ENST00000392981 5383 ntAPPRIS ALT1 TSL 1 (best) BASIC2.88□□□□□ -1.95
COL5A3P25940 SLC9C2-201ENST00000367714 4428 ntAPPRIS P1 TSL 1 (best) BASIC2.88□□□□□ -1.95
COL5A3P25940 TLK1-206ENST00000434911 2156 ntTSL 2 BASIC2.88□□□□□ -1.95
COL5A3P25940 CFH-202ENST00000367429 4127 ntAPPRIS P1 TSL 1 (best) BASIC2.88□□□□□ -1.95
COL5A3P25940 RNU1-91P-201ENST00000364746 163 ntBASIC2.88□□□□□ -1.95
COL5A3P25940 PTP4A1P1-201ENST00000420539 515 ntBASIC2.88□□□□□ -1.95
COL5A3P25940 AC012498.1-201ENST00000424037 437 ntBASIC2.88□□□□□ -1.95
COL5A3P25940 CACYBPP1-201ENST00000438592 684 ntBASIC2.88□□□□□ -1.95
COL5A3P25940 AC010451.2-201ENST00000511514 545 ntTSL 4 BASIC2.88□□□□□ -1.95
COL5A3P25940 AL161752.1-201ENST00000557721 263 ntTSL 2 BASIC2.88□□□□□ -1.95
COL5A3P25940 AC135628.1-201ENST00000568867 534 ntBASIC2.88□□□□□ -1.95
COL5A3P25940 AC006504.5-204ENST00000592404 765 ntTSL 3 BASIC2.88□□□□□ -1.95
COL5A3P25940 AC003973.1-201ENST00000600071 546 ntTSL 4 BASIC2.88□□□□□ -1.95
COL5A3P25940 AL161912.3-201ENST00000605404 628 ntBASIC2.88□□□□□ -1.95
COL5A3P25940 XKR3-201ENST00000331428 1690 ntAPPRIS P1 TSL 1 (best) BASIC2.88□□□□□ -1.95
COL5A3P25940 PI15-201ENST00000260113 6732 ntAPPRIS P1 TSL 1 (best) BASIC2.87□□□□□ -1.95
COL5A3P25940 AC091564.4-201ENST00000533934 2194 ntBASIC2.87□□□□□ -1.95
COL5A3P25940 OR9G4-203ENST00000641581 2603 ntAPPRIS P1 BASIC2.87□□□□□ -1.95
COL5A3P25940 PALMD-205ENST00000615664 1844 ntTSL 5 BASIC2.87□□□□□ -1.95
COL5A3P25940 AC098798.1-201ENST00000503998 1447 ntTSL 5 BASIC2.87□□□□□ -1.95
COL5A3P25940 RNA5SP99-201ENST00000364020 114 ntBASIC2.87□□□□□ -1.95
COL5A3P25940 AC006076.1-201ENST00000423233 345 ntTSL 3 BASIC2.87□□□□□ -1.95
COL5A3P25940 AP000936.1-201ENST00000442124 483 ntTSL 5 BASIC2.87□□□□□ -1.95
COL5A3P25940 AC239798.3-201ENST00000454459 408 ntBASIC2.87□□□□□ -1.95
COL5A3P25940 LEKR1-206ENST00000483177 546 ntTSL 3 BASIC2.87□□□□□ -1.95
COL5A3P25940 AC093297.1-201ENST00000511712 591 ntTSL 4 BASIC2.87□□□□□ -1.95
COL5A3P25940 MAL2-203ENST00000534619 578 ntTSL 4 BASIC2.87□□□□□ -1.95
COL5A3P25940 LINC02399-201ENST00000547094 400 ntTSL 2 BASIC2.87□□□□□ -1.95
COL5A3P25940 AC107982.2-201ENST00000577360 463 ntTSL 5 BASIC2.87□□□□□ -1.95
COL5A3P25940 AC016727.1-205ENST00000605437 569 ntBASIC2.87□□□□□ -1.95
COL5A3P25940 ABCD2-201ENST00000308666 6238 ntAPPRIS P1 TSL 1 (best) BASIC2.87□□□□□ -1.95
COL5A3P25940 SEMA3D-201ENST00000284136 6265 ntAPPRIS P1 TSL 5 BASIC2.87□□□□□ -1.95
COL5A3P25940 OR4K2-204ENST00000641885 8681 ntAPPRIS P1 BASIC2.86□□□□□ -1.95
COL5A3P25940 AC093010.3-201ENST00000570269 15214 ntBASIC2.86□□□□□ -1.95
COL5A3P25940 AC022336.2-201ENST00000568966 2538 ntBASIC2.86□□□□□ -1.95
COL5A3P25940 AC100800.1-201ENST00000524252 2054 ntTSL 1 (best) BASIC2.86□□□□□ -1.95
COL5A3P25940 RNA5SP88-201ENST00000365560 109 ntBASIC2.86□□□□□ -1.95
COL5A3P25940 S100G-201ENST00000380200 455 ntAPPRIS P1 TSL 1 (best) BASIC2.86□□□□□ -1.95
COL5A3P25940 AL354733.1-203ENST00000417672 495 ntTSL 5 BASIC2.86□□□□□ -1.95
COL5A3P25940 AC244505.4-201ENST00000434905 287 ntBASIC2.86□□□□□ -1.95
COL5A3P25940 SSXP5-201ENST00000443473 287 ntBASIC2.86□□□□□ -1.95
COL5A3P25940 AC004160.1-211ENST00000445839 565 ntTSL 4 BASIC2.86□□□□□ -1.95
COL5A3P25940 LINC01069-201ENST00000452933 546 ntTSL 5 BASIC2.86□□□□□ -1.95
COL5A3P25940 AC115618.2-201ENST00000453810 450 ntTSL 3 BASIC2.86□□□□□ -1.95
COL5A3P25940 RN7SKP5-201ENST00000517045 272 ntBASIC2.86□□□□□ -1.95
COL5A3P25940 AC018616.1-201ENST00000524085 546 ntTSL 5 BASIC2.86□□□□□ -1.95
COL5A3P25940 AC107886.1-201ENST00000526935 516 ntTSL 3 BASIC2.86□□□□□ -1.95
COL5A3P25940 HIGD1AP10-201ENST00000527837 282 ntBASIC2.86□□□□□ -1.95
COL5A3P25940 OR11H5P-201ENST00000554039 926 ntBASIC2.86□□□□□ -1.95
COL5A3P25940 AL450489.1-201ENST00000612071 468 ntBASIC2.86□□□□□ -1.95
COL5A3P25940 ATP8A2P2-201ENST00000437678 1568 ntBASIC2.86□□□□□ -1.95
COL5A3P25940 ADAM3A-203ENST00000461344 2157 ntBASIC2.86□□□□□ -1.95
COL5A3P25940 RNMT-206ENST00000589866 1879 ntAPPRIS P1 TSL 1 (best) BASIC2.85□□□□□ -1.95
COL5A3P25940 ZBTB6-201ENST00000373659 4106 ntAPPRIS P1 TSL 1 (best) BASIC2.85□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 95.3 ms