Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 HMGB3P11-201ENST00000440127 604 ntBASIC3.2□□□□□ -1.9
SDC1P18827 EEF1A1P39-201ENST00000440791 250 ntBASIC3.2□□□□□ -1.9
SDC1P18827 RPL23AP76-201ENST00000441860 458 ntBASIC3.2□□□□□ -1.9
SDC1P18827 RAB9AP1-201ENST00000449393 573 ntBASIC3.2□□□□□ -1.9
SDC1P18827 DUXAP8-207ENST00000456786 622 ntBASIC3.2□□□□□ -1.9
SDC1P18827 AC010468.1-201ENST00000461022 817 ntBASIC3.2□□□□□ -1.9
SDC1P18827 AC011979.1-201ENST00000472300 483 ntBASIC3.2□□□□□ -1.9
SDC1P18827 SYPL1P1-201ENST00000473622 768 ntBASIC3.2□□□□□ -1.9
SDC1P18827 TIPARP-AS1-202ENST00000478005 554 ntTSL 4 BASIC3.2□□□□□ -1.9
SDC1P18827 AC108734.3-201ENST00000481241 1165 ntBASIC3.2□□□□□ -1.9
SDC1P18827 AC068587.1-201ENST00000483613 781 ntBASIC3.2□□□□□ -1.9
SDC1P18827 AC106707.2-201ENST00000484182 374 ntBASIC3.2□□□□□ -1.9
SDC1P18827 OR4G11P-201ENST00000492842 939 ntBASIC3.2□□□□□ -1.9
SDC1P18827 GTF2IP9-201ENST00000502460 301 ntBASIC3.2□□□□□ -1.9
SDC1P18827 AC108078.3-201ENST00000502633 489 ntBASIC3.2□□□□□ -1.9
SDC1P18827 AC114912.1-201ENST00000503394 546 ntTSL 3 BASIC3.2□□□□□ -1.9
SDC1P18827 KLRA1P-201ENST00000503499 986 ntBASIC3.2□□□□□ -1.9
SDC1P18827 AC114322.1-201ENST00000506771 926 ntBASIC3.2□□□□□ -1.9
SDC1P18827 AC023141.12-201ENST00000512399 199 ntBASIC3.2□□□□□ -1.9
SDC1P18827 AC008837.2-201ENST00000513076 418 ntBASIC3.2□□□□□ -1.9
SDC1P18827 RNU6-415P-201ENST00000516252 97 ntBASIC3.2□□□□□ -1.9
SDC1P18827 AC022784.3-202ENST00000517816 826 ntTSL 3 BASIC3.2□□□□□ -1.9
SDC1P18827 AC104027.1-201ENST00000521887 300 ntBASIC3.2□□□□□ -1.9
SDC1P18827 CA1-215ENST00000522389 551 ntTSL 3 BASIC3.2□□□□□ -1.9
SDC1P18827 HTN3-205ENST00000530128 775 ntAPPRIS P2 TSL 2 BASIC3.2□□□□□ -1.9
SDC1P18827 AC008127.2-201ENST00000549925 1075 ntBASIC3.2□□□□□ -1.9
SDC1P18827 AADACP1-206ENST00000561502 1193 ntBASIC3.2□□□□□ -1.9
SDC1P18827 PWRN1-202ENST00000562501 642 ntTSL 3 BASIC3.2□□□□□ -1.9
SDC1P18827 AC023813.2-201ENST00000564321 469 ntBASIC3.2□□□□□ -1.9
SDC1P18827 AC079411.1-201ENST00000565441 795 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
SDC1P18827 AC007495.1-203ENST00000569025 888 ntTSL 5 BASIC3.2□□□□□ -1.9
SDC1P18827 LINC01894-201ENST00000580984 487 ntTSL 2 BASIC3.2□□□□□ -1.9
SDC1P18827 AC090616.5-202ENST00000582111 297 ntBASIC3.2□□□□□ -1.9
SDC1P18827 AL390838.2-201ENST00000602394 274 ntBASIC3.2□□□□□ -1.9
SDC1P18827 RPP40P2-201ENST00000603596 712 ntBASIC3.2□□□□□ -1.9
SDC1P18827 AC106052.1-201ENST00000608029 497 ntBASIC3.2□□□□□ -1.9
SDC1P18827 PRKCQ-AS1-208ENST00000608453 587 ntTSL 5 BASIC3.2□□□□□ -1.9
SDC1P18827 DUXAP10-204ENST00000612052 616 ntBASIC3.2□□□□□ -1.9
SDC1P18827 AC005332.6-201ENST00000613178 446 ntBASIC3.2□□□□□ -1.9
SDC1P18827 RDM1-219ENST00000615378 542 ntTSL 3 BASIC3.2□□□□□ -1.9
SDC1P18827 AC231759.1-201ENST00000616455 597 ntBASIC3.2□□□□□ -1.9
SDC1P18827 AC073968.1-201ENST00000618594 637 ntBASIC3.2□□□□□ -1.9
SDC1P18827 C3orf79-201ENST00000623038 580 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
SDC1P18827 UGP2-231ENST00000627474 264 ntTSL 5 BASIC3.2□□□□□ -1.9
SDC1P18827 GMFB-210ENST00000628554 639 ntTSL 4 BASIC3.2□□□□□ -1.9
SDC1P18827 U6.98-201ENST00000637157 84 ntBASIC3.2□□□□□ -1.9
SDC1P18827 FAP-201ENST00000188790 2780 ntAPPRIS P2 TSL 1 (best) BASIC3.2□□□□□ -1.9
SDC1P18827 LINC02431-201ENST00000503929 3601 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
SDC1P18827 WDR72-201ENST00000360509 5887 ntAPPRIS P2 TSL 1 (best) BASIC3.2□□□□□ -1.9
SDC1P18827 ADGRV1-201ENST00000405460 19557 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
SDC1P18827 UFM1-201ENST00000239878 3138 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
SDC1P18827 CR383658.2-201ENST00000547576 1525 ntBASIC3.19□□□□□ -1.9
SDC1P18827 CCDC178-204ENST00000403303 3354 ntAPPRIS ALT2 TSL 1 (best) BASIC3.19□□□□□ -1.9
SDC1P18827 TAS2R3-201ENST00000247879 1101 ntAPPRIS P1 BASIC3.19□□□□□ -1.9
SDC1P18827 OR6C2-201ENST00000322678 939 ntAPPRIS P1 BASIC3.19□□□□□ -1.9
SDC1P18827 Y_RNA.25-201ENST00000362528 102 ntBASIC3.19□□□□□ -1.9
SDC1P18827 SNORD82-201ENST00000365530 70 ntBASIC3.19□□□□□ -1.9
SDC1P18827 RNU6-761P-201ENST00000384148 107 ntBASIC3.19□□□□□ -1.9
SDC1P18827 RNU4-78P-201ENST00000410940 126 ntBASIC3.19□□□□□ -1.9
SDC1P18827 MTND2P9-201ENST00000422293 931 ntBASIC3.19□□□□□ -1.9
SDC1P18827 LAMTOR3P1-201ENST00000428620 370 ntBASIC3.19□□□□□ -1.9
SDC1P18827 AC073063.1-201ENST00000434352 607 ntBASIC3.19□□□□□ -1.9
SDC1P18827 HSD52-202ENST00000436225 772 ntTSL 3 BASIC3.19□□□□□ -1.9
SDC1P18827 ISCA1P2-201ENST00000438679 421 ntBASIC3.19□□□□□ -1.9
SDC1P18827 AC006333.1-202ENST00000440504 555 ntTSL 4 BASIC3.19□□□□□ -1.9
SDC1P18827 LINC01986-201ENST00000440867 590 ntTSL 5 BASIC3.19□□□□□ -1.9
SDC1P18827 TIPARP-AS1-201ENST00000463449 735 ntTSL 3 BASIC3.19□□□□□ -1.9
SDC1P18827 MDM2-217ENST00000478070 692 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
SDC1P18827 TMED11P-201ENST00000479478 690 ntBASIC3.19□□□□□ -1.9
SDC1P18827 AC078918.1-201ENST00000498515 228 ntBASIC3.19□□□□□ -1.9
SDC1P18827 AC093767.1-201ENST00000504523 156 ntBASIC3.19□□□□□ -1.9
SDC1P18827 FCF1P8-201ENST00000510322 597 ntBASIC3.19□□□□□ -1.9
SDC1P18827 SCARNA20.6-201ENST00000517251 106 ntBASIC3.19□□□□□ -1.9
SDC1P18827 IGKV2-26-201ENST00000518305 343 ntBASIC3.19□□□□□ -1.9
SDC1P18827 AC027701.1-201ENST00000520155 823 ntTSL 3 BASIC3.19□□□□□ -1.9
SDC1P18827 NRG1-IT1-202ENST00000521463 742 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
SDC1P18827 AC093331.1-201ENST00000521474 169 ntBASIC3.19□□□□□ -1.9
SDC1P18827 AP001205.1-201ENST00000521625 449 ntTSL 3 BASIC3.19□□□□□ -1.9
SDC1P18827 AC103952.1-201ENST00000521872 590 ntTSL 3 BASIC3.19□□□□□ -1.9
SDC1P18827 AP003385.6-201ENST00000531603 374 ntBASIC3.19□□□□□ -1.9
SDC1P18827 AC093025.1-201ENST00000547795 569 ntTSL 2 BASIC3.19□□□□□ -1.9
SDC1P18827 AC125611.1-201ENST00000549563 229 ntBASIC3.19□□□□□ -1.9
SDC1P18827 AC106785.1-201ENST00000565935 262 ntBASIC3.19□□□□□ -1.9
SDC1P18827 FOPNL-208ENST00000575744 565 ntTSL 4 BASIC3.19□□□□□ -1.9
SDC1P18827 AC015908.2-202ENST00000585243 756 ntTSL 3 BASIC3.19□□□□□ -1.9
SDC1P18827 AC010928.3-201ENST00000587712 541 ntBASIC3.19□□□□□ -1.9
SDC1P18827 AC011509.1-201ENST00000589512 164 ntTSL 3 BASIC3.19□□□□□ -1.9
SDC1P18827 MTCO2P2-201ENST00000591258 225 ntBASIC3.19□□□□□ -1.9
SDC1P18827 AL670729.3-201ENST00000602345 574 ntTSL 4 BASIC3.19□□□□□ -1.9
SDC1P18827 ACTR3BP1-201ENST00000605584 1247 ntBASIC3.19□□□□□ -1.9
SDC1P18827 SNORD39.4-201ENST00000620099 78 ntBASIC3.19□□□□□ -1.9
SDC1P18827 AC092184.1-201ENST00000625042 715 ntBASIC3.19□□□□□ -1.9
SDC1P18827 CGA-204ENST00000627148 1010 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
SDC1P18827 C6orf10-203ENST00000442822 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC3.19□□□□□ -1.9
SDC1P18827 GPR34-201ENST00000378138 1815 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
SDC1P18827 AC021237.1-201ENST00000504175 1643 ntTSL 2 BASIC3.19□□□□□ -1.9
SDC1P18827 ZNF542P-204ENST00000482727 1305 ntBASIC3.19□□□□□ -1.9
SDC1P18827 AC107982.1-201ENST00000507171 1300 ntBASIC3.19□□□□□ -1.9
SDC1P18827 AL161457.2-203ENST00000590767 2663 ntTSL 5 BASIC3.18□□□□□ -1.9
SDC1P18827 MIPOL1-206ENST00000545536 2073 ntTSL 5 BASIC3.18□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 95.2 ms