Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 AC007557.1-201ENST00000451711 541 ntTSL 2 BASIC2.42□□□□□ -2.02
COL6A3P12111 AC020900.1-201ENST00000502568 565 ntTSL 4 BASIC2.42□□□□□ -2.02
COL6A3P12111 C4orf33-204ENST00000502887 1126 ntTSL 1 (best) BASIC2.42□□□□□ -2.02
COL6A3P12111 AC010338.1-201ENST00000621823 717 ntBASIC2.42□□□□□ -2.02
COL6A3P12111 MIR1291-201ENST00000627649 87 ntBASIC2.42□□□□□ -2.02
COL6A3P12111 ST7-AS2-206ENST00000456577 1351 ntTSL 1 (best) BASIC2.42□□□□□ -2.02
COL6A3P12111 AC004160.1-212ENST00000421121 2078 ntTSL 1 (best) BASIC2.42□□□□□ -2.02
COL6A3P12111 MIR133A1HG-202ENST00000581072 4226 ntTSL 1 (best) BASIC2.42□□□□□ -2.02
COL6A3P12111 AC093831.2-201ENST00000624393 3427 ntBASIC2.41□□□□□ -2.02
COL6A3P12111 CNOT6L-201ENST00000504123 8843 ntAPPRIS P1 TSL 2 BASIC2.41□□□□□ -2.02
COL6A3P12111 KLRC2-202ENST00000381902 1221 ntAPPRIS P2 TSL 1 (best) BASIC2.41□□□□□ -2.02
COL6A3P12111 RPS3AP9-201ENST00000417027 792 ntBASIC2.41□□□□□ -2.02
COL6A3P12111 AL078601.2-201ENST00000429444 474 ntTSL 2 BASIC2.41□□□□□ -2.02
COL6A3P12111 OR4K11P-201ENST00000431829 904 ntBASIC2.41□□□□□ -2.02
COL6A3P12111 DEFB122-201ENST00000433453 499 ntTSL 1 (best) BASIC2.41□□□□□ -2.02
COL6A3P12111 MTND2P29-201ENST00000438595 412 ntBASIC2.41□□□□□ -2.02
COL6A3P12111 AL160408.1-203ENST00000453568 631 ntTSL 5 BASIC2.41□□□□□ -2.02
COL6A3P12111 KCTD9P5-201ENST00000504141 1170 ntBASIC2.41□□□□□ -2.02
COL6A3P12111 AC128657.1-201ENST00000549459 145 ntBASIC2.41□□□□□ -2.02
COL6A3P12111 AC012379.1-201ENST00000558304 406 ntTSL 3 BASIC2.41□□□□□ -2.02
COL6A3P12111 OR8K3-203ENST00000641662 2438 ntAPPRIS P1 BASIC2.41□□□□□ -2.02
COL6A3P12111 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC2.41□□□□□ -2.02
COL6A3P12111 FAM126B-202ENST00000418596 9333 ntAPPRIS P1 TSL 1 (best) BASIC2.41□□□□□ -2.02
COL6A3P12111 SERPINI2-206ENST00000471111 1331 ntAPPRIS P1 TSL 1 (best) BASIC2.41□□□□□ -2.02
COL6A3P12111 ARHGAP12-201ENST00000311380 4625 ntTSL 1 (best) BASIC2.41□□□□□ -2.02
COL6A3P12111 PRKG2-206ENST00000545647 3852 ntTSL 5 BASIC2.41□□□□□ -2.02
COL6A3P12111 SNORA46-201ENST00000384762 135 ntBASIC2.41□□□□□ -2.02
COL6A3P12111 CASP3-203ENST00000393588 677 ntTSL 4 BASIC2.41□□□□□ -2.02
COL6A3P12111 UBE2V1P5-201ENST00000440070 405 ntBASIC2.41□□□□□ -2.02
COL6A3P12111 AP000477.2-201ENST00000447405 778 ntTSL 3 BASIC2.41□□□□□ -2.02
COL6A3P12111 ASNSP4-201ENST00000511103 447 ntBASIC2.41□□□□□ -2.02
COL6A3P12111 AC021269.2-201ENST00000532318 330 ntBASIC2.41□□□□□ -2.02
COL6A3P12111 AC007620.3-201ENST00000608131 497 ntBASIC2.41□□□□□ -2.02
COL6A3P12111 LINC02477-201ENST00000512652 1417 ntTSL 5 BASIC2.41□□□□□ -2.02
COL6A3P12111 SPATA17-201ENST00000366933 5818 ntAPPRIS P1 TSL 1 (best) BASIC2.41□□□□□ -2.02
COL6A3P12111 MACF1-232ENST00000567887 24319 ntAPPRIS P5 TSL 5 BASIC2.41□□□□□ -2.02
COL6A3P12111 ATXN3L-201ENST00000380622 2164 ntAPPRIS P1 BASIC2.41□□□□□ -2.02
COL6A3P12111 MIR4285-201ENST00000581001 85 ntBASIC2.41□□□□□ -2.02
COL6A3P12111 MIR219B-201ENST00000637023 88 ntBASIC2.41□□□□□ -2.02
COL6A3P12111 PRKD3-201ENST00000234179 5900 ntAPPRIS P1 TSL 1 (best) BASIC2.4□□□□□ -2.02
COL6A3P12111 AP005901.5-201ENST00000545779 1796 ntBASIC2.4□□□□□ -2.02
COL6A3P12111 LAP3P1-201ENST00000403648 294 ntBASIC2.4□□□□□ -2.03
COL6A3P12111 LINC02532-205ENST00000430094 628 ntTSL 5 BASIC2.4□□□□□ -2.03
COL6A3P12111 LINC01598-201ENST00000432067 460 ntTSL 3 BASIC2.4□□□□□ -2.03
COL6A3P12111 RPL23AP45-201ENST00000476406 468 ntBASIC2.4□□□□□ -2.03
COL6A3P12111 AC104090.1-201ENST00000506341 1171 ntBASIC2.4□□□□□ -2.03
COL6A3P12111 AC079380.1-201ENST00000507844 619 ntTSL 3 BASIC2.4□□□□□ -2.03
COL6A3P12111 RPL23AP84-201ENST00000571193 464 ntBASIC2.4□□□□□ -2.03
COL6A3P12111 SOX2-OT-224ENST00000595313 716 ntTSL 5 BASIC2.4□□□□□ -2.03
COL6A3P12111 ZNF788-206ENST00000596883 692 ntTSL 3 BASIC2.4□□□□□ -2.03
COL6A3P12111 MIR3199-2-201ENST00000636243 86 ntBASIC2.4□□□□□ -2.03
COL6A3P12111 AL138878.1-201ENST00000405131 347 ntBASIC2.4□□□□□ -2.03
COL6A3P12111 AC004965.1-201ENST00000413033 213 ntBASIC2.4□□□□□ -2.03
COL6A3P12111 AL136369.2-201ENST00000420825 537 ntTSL 3 BASIC2.4□□□□□ -2.03
COL6A3P12111 AL513321.1-201ENST00000441175 761 ntBASIC2.4□□□□□ -2.03
COL6A3P12111 FGF7P3-201ENST00000454645 303 ntBASIC2.4□□□□□ -2.03
COL6A3P12111 RN7SL633P-201ENST00000488974 297 ntBASIC2.4□□□□□ -2.03
COL6A3P12111 IGLVIV-53-201ENST00000520107 367 ntBASIC2.4□□□□□ -2.03
COL6A3P12111 AL365503.1-201ENST00000605247 905 ntBASIC2.4□□□□□ -2.03
COL6A3P12111 U7.8-201ENST00000619968 63 ntBASIC2.4□□□□□ -2.03
COL6A3P12111 AC118758.3-201ENST00000624628 24137 ntTSL 5 BASIC2.4□□□□□ -2.03
COL6A3P12111 CACNB4-238ENST00000636901 7706 ntTSL 5 BASIC2.4□□□□□ -2.03
COL6A3P12111 FRG1BP-201ENST00000278882 761 ntBASIC2.39□□□□□ -2.03
COL6A3P12111 AC104332.2-201ENST00000429959 156 ntBASIC2.39□□□□□ -2.03
COL6A3P12111 NHS-AS1-201ENST00000452788 366 ntTSL 3 BASIC2.39□□□□□ -2.03
COL6A3P12111 IGKV2D-23-201ENST00000518179 286 ntBASIC2.39□□□□□ -2.03
COL6A3P12111 RPAP2P1-201ENST00000603626 1168 ntBASIC2.39□□□□□ -2.03
COL6A3P12111 AC131238.1-201ENST00000617135 328 ntBASIC2.39□□□□□ -2.03
COL6A3P12111 OR5B12-202ENST00000641921 1807 ntAPPRIS P1 BASIC2.39□□□□□ -2.03
COL6A3P12111 AL590399.3-201ENST00000438072 543 ntTSL 5 BASIC2.39□□□□□ -2.03
COL6A3P12111 HMGB3P8-201ENST00000449709 577 ntBASIC2.39□□□□□ -2.03
COL6A3P12111 AC140059.1-201ENST00000489238 361 ntBASIC2.39□□□□□ -2.03
COL6A3P12111 snoZ278.1-201ENST00000517059 112 ntBASIC2.39□□□□□ -2.03
COL6A3P12111 AL359740.1-201ENST00000624340 592 ntBASIC2.39□□□□□ -2.03
COL6A3P12111 TFEC-203ENST00000393485 2704 ntTSL 2 BASIC2.39□□□□□ -2.03
COL6A3P12111 MUC12-202ENST00000379442 16737 ntAPPRIS ALT2 TSL 5 BASIC2.39□□□□□ -2.03
COL6A3P12111 DEFB106A-201ENST00000335186 303 ntAPPRIS P1 TSL 1 (best) BASIC2.39□□□□□ -2.03
COL6A3P12111 AL590004.2-201ENST00000404787 371 ntBASIC2.39□□□□□ -2.03
COL6A3P12111 AC245054.2-201ENST00000415639 319 ntBASIC2.39□□□□□ -2.03
COL6A3P12111 AL358075.3-201ENST00000426289 226 ntBASIC2.39□□□□□ -2.03
COL6A3P12111 AC092994.1-201ENST00000498604 279 ntTSL 3 BASIC2.39□□□□□ -2.03
COL6A3P12111 AC024022.1-202ENST00000508911 394 ntTSL 2 BASIC2.39□□□□□ -2.03
COL6A3P12111 HMMR-AS1-202ENST00000521666 800 ntTSL 2 BASIC2.39□□□□□ -2.03
COL6A3P12111 OXR1-207ENST00000497705 2007 ntTSL 2 BASIC2.38□□□□□ -2.03
COL6A3P12111 KLRC1-202ENST00000359151 1407 ntAPPRIS P4 TSL 1 (best) BASIC2.38□□□□□ -2.03
COL6A3P12111 Y_RNA.327-201ENST00000365201 102 ntBASIC2.38□□□□□ -2.03
COL6A3P12111 AL139156.1-201ENST00000412785 841 ntBASIC2.38□□□□□ -2.03
COL6A3P12111 PTP4A1P7-201ENST00000423476 514 ntBASIC2.38□□□□□ -2.03
COL6A3P12111 AL359634.1-201ENST00000429807 1179 ntTSL 5 BASIC2.38□□□□□ -2.03
COL6A3P12111 AL137159.1-201ENST00000452808 512 ntBASIC2.38□□□□□ -2.03
COL6A3P12111 AC061975.8-201ENST00000587058 721 ntBASIC2.38□□□□□ -2.03
COL6A3P12111 AC002115.1-201ENST00000589603 568 ntTSL 4 BASIC2.38□□□□□ -2.03
COL6A3P12111 BCLAF1-214ENST00000531224 7263 ntAPPRIS P3 TSL 1 (best) BASIC2.38□□□□□ -2.03
COL6A3P12111 RPL9P7-201ENST00000330965 580 ntBASIC2.38□□□□□ -2.03
COL6A3P12111 AL034379.1-201ENST00000423216 253 ntBASIC2.38□□□□□ -2.03
COL6A3P12111 RN7SKP40-201ENST00000517211 242 ntBASIC2.38□□□□□ -2.03
COL6A3P12111 MAL2-205ENST00000521048 575 ntTSL 4 BASIC2.38□□□□□ -2.03
COL6A3P12111 AC011363.1-201ENST00000524198 458 ntTSL 5 BASIC2.38□□□□□ -2.03
COL6A3P12111 AC103710.1-201ENST00000610003 901 ntBASIC2.38□□□□□ -2.03
COL6A3P12111 CCDC178-205ENST00000406524 3039 ntAPPRIS ALT2 TSL 5 BASIC2.38□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 95.9 ms