Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 AP005901.2-201ENST00000581690 525 ntTSL 3 BASIC5.09□□□□□ -1.59
HMGB1P09429 AC024267.4-202ENST00000582631 436 ntTSL 2 BASIC5.09□□□□□ -1.59
HMGB1P09429 AC007448.1-201ENST00000582714 234 ntBASIC5.09□□□□□ -1.59
HMGB1P09429 LINC01533-202ENST00000588694 632 ntTSL 2 BASIC5.09□□□□□ -1.59
HMGB1P09429 BNIP3P23-201ENST00000599655 511 ntBASIC5.09□□□□□ -1.59
HMGB1P09429 AC080078.1-201ENST00000603643 410 ntTSL 3 BASIC5.09□□□□□ -1.59
HMGB1P09429 AP000240.1-201ENST00000609910 452 ntBASIC5.09□□□□□ -1.59
HMGB1P09429 AC009268.2-201ENST00000621925 457 ntBASIC5.09□□□□□ -1.59
HMGB1P09429 BIRC6-AS2-201ENST00000623382 589 ntTSL 2 BASIC5.09□□□□□ -1.59
HMGB1P09429 AC079597.1-201ENST00000624306 508 ntBASIC5.09□□□□□ -1.59
HMGB1P09429 AC244258.1-201ENST00000637553 1071 ntBASIC5.09□□□□□ -1.59
HMGB1P09429 SCEL-201ENST00000349847 2386 ntAPPRIS P4 TSL 1 (best) BASIC5.09□□□□□ -1.59
HMGB1P09429 CENPI-201ENST00000372926 2375 ntAPPRIS ALT2 TSL 5 BASIC5.09□□□□□ -1.59
HMGB1P09429 AC010300.1-201ENST00000600671 5134 ntBASIC5.09□□□□□ -1.6
HMGB1P09429 ENOX2-202ENST00000370927 3788 ntTSL 1 (best) BASIC5.09□□□□□ -1.6
HMGB1P09429 PTPRC-201ENST00000348564 4626 ntAPPRIS ALT2 TSL 1 (best) BASIC5.09□□□□□ -1.6
HMGB1P09429 ANKRD26P2-201ENST00000445530 1710 ntBASIC5.09□□□□□ -1.6
HMGB1P09429 ATP13A3-203ENST00000439040 7720 ntAPPRIS P1 TSL 5 BASIC5.09□□□□□ -1.6
HMGB1P09429 ZNF638-203ENST00000409544 6821 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.6
HMGB1P09429 NRK-204ENST00000540278 1687 ntTSL 2 BASIC5.08□□□□□ -1.6
HMGB1P09429 MUC7-203ENST00000456088 2479 ntAPPRIS P2 TSL 4 BASIC5.08□□□□□ -1.6
HMGB1P09429 AC015813.1-202ENST00000577267 4056 ntTSL 2 BASIC5.08□□□□□ -1.6
HMGB1P09429 DMD-229ENST00000619831 13734 ntAPPRIS ALT2 TSL 5 BASIC5.08□□□□□ -1.6
HMGB1P09429 DMD-230ENST00000620040 13746 ntAPPRIS ALT2 TSL 5 BASIC5.08□□□□□ -1.6
HMGB1P09429 LINC00901-201ENST00000487512 1452 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
HMGB1P09429 U3.20-201ENST00000390909 217 ntBASIC5.08□□□□□ -1.6
HMGB1P09429 MTND4P13-201ENST00000402078 1023 ntBASIC5.08□□□□□ -1.6
HMGB1P09429 LINC01423-201ENST00000414189 608 ntTSL 3 BASIC5.08□□□□□ -1.6
HMGB1P09429 LINC01427-201ENST00000420928 504 ntTSL 3 BASIC5.08□□□□□ -1.6
HMGB1P09429 AL391069.1-201ENST00000422153 358 ntTSL 3 BASIC5.08□□□□□ -1.6
HMGB1P09429 AC245028.1-201ENST00000423259 256 ntBASIC5.08□□□□□ -1.6
HMGB1P09429 LINC01757-201ENST00000435552 480 ntTSL 2 BASIC5.08□□□□□ -1.6
HMGB1P09429 LINC01359-202ENST00000436350 710 ntTSL 3 BASIC5.08□□□□□ -1.6
HMGB1P09429 AL512658.1-201ENST00000449072 533 ntTSL 3 BASIC5.08□□□□□ -1.6
HMGB1P09429 LINC01645-201ENST00000451341 491 ntTSL 3 BASIC5.08□□□□□ -1.6
HMGB1P09429 MTND1P9-201ENST00000453775 944 ntBASIC5.08□□□□□ -1.6
HMGB1P09429 AC093752.1-212ENST00000500559 453 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
HMGB1P09429 ERAP2-205ENST00000510309 1275 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
HMGB1P09429 RN7SKP265-201ENST00000516448 223 ntBASIC5.08□□□□□ -1.6
HMGB1P09429 TATDN1-206ENST00000519548 889 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
HMGB1P09429 AC090503.1-201ENST00000548029 729 ntTSL 3 BASIC5.08□□□□□ -1.6
HMGB1P09429 MTND1P24-201ENST00000552175 861 ntBASIC5.08□□□□□ -1.6
HMGB1P09429 AL354984.3-201ENST00000604803 325 ntBASIC5.08□□□□□ -1.6
HMGB1P09429 AC008121.2-201ENST00000614647 523 ntBASIC5.08□□□□□ -1.6
HMGB1P09429 DLEU1_2.1-201ENST00000617920 342 ntBASIC5.08□□□□□ -1.6
HMGB1P09429 AC018816.2-201ENST00000621460 353 ntBASIC5.08□□□□□ -1.6
HMGB1P09429 PCMTD1P7-201ENST00000634506 357 ntBASIC5.08□□□□□ -1.6
HMGB1P09429 MTX3-203ENST00000512560 4799 ntTSL 2 BASIC5.08□□□□□ -1.6
HMGB1P09429 GABRB2-203ENST00000393959 7191 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
HMGB1P09429 MTRNR2L6-201ENST00000604952 1447 ntAPPRIS P1 BASIC5.07□□□□□ -1.6
HMGB1P09429 ATXN3-207ENST00000503767 1315 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
HMGB1P09429 RXFP1-204ENST00000423548 3930 ntTSL 2 BASIC5.07□□□□□ -1.6
HMGB1P09429 LCA5L-218ENST00000485895 2551 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
HMGB1P09429 OR52E2-201ENST00000321522 978 ntAPPRIS P1 BASIC5.07□□□□□ -1.6
HMGB1P09429 MIR1179-201ENST00000408703 91 ntBASIC5.07□□□□□ -1.6
HMGB1P09429 EPGN-202ENST00000413830 1196 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
HMGB1P09429 AL022400.1-201ENST00000423946 935 ntBASIC5.07□□□□□ -1.6
HMGB1P09429 AC017074.1-201ENST00000424612 561 ntTSL 3 BASIC5.07□□□□□ -1.6
HMGB1P09429 AL157831.1-201ENST00000426134 473 ntBASIC5.07□□□□□ -1.6
HMGB1P09429 AC003084.1-201ENST00000427030 435 ntTSL 5 BASIC5.07□□□□□ -1.6
HMGB1P09429 AL035407.1-201ENST00000429211 571 ntBASIC5.07□□□□□ -1.6
HMGB1P09429 AL356867.1-201ENST00000429623 299 ntBASIC5.07□□□□□ -1.6
HMGB1P09429 RPS3AP54-201ENST00000435535 734 ntBASIC5.07□□□□□ -1.6
HMGB1P09429 AP1S3-208ENST00000446015 499 ntAPPRIS ALT1 TSL 1 (best) BASIC5.07□□□□□ -1.6
HMGB1P09429 Z98749.1-201ENST00000454123 541 ntTSL 5 BASIC5.07□□□□□ -1.6
HMGB1P09429 AL158069.1-201ENST00000454131 455 ntTSL 5 BASIC5.07□□□□□ -1.6
HMGB1P09429 NDUFA12P1-201ENST00000455914 406 ntBASIC5.07□□□□□ -1.6
HMGB1P09429 LINC01510-203ENST00000458082 626 ntTSL 3 BASIC5.07□□□□□ -1.6
HMGB1P09429 AC010789.1-201ENST00000458489 291 ntTSL 5 BASIC5.07□□□□□ -1.6
HMGB1P09429 snoU13.1-201ENST00000459157 104 ntBASIC5.07□□□□□ -1.6
HMGB1P09429 AC016933.1-201ENST00000504735 539 ntTSL 2 BASIC5.07□□□□□ -1.6
HMGB1P09429 AC006445.2-201ENST00000510061 472 ntBASIC5.07□□□□□ -1.6
HMGB1P09429 AC104233.2-201ENST00000518922 414 ntTSL 3 BASIC5.07□□□□□ -1.6
HMGB1P09429 CASP1P1-201ENST00000526345 212 ntBASIC5.07□□□□□ -1.6
HMGB1P09429 AC023161.2-201ENST00000551218 780 ntBASIC5.07□□□□□ -1.6
HMGB1P09429 AC021979.1-201ENST00000553822 336 ntTSL 3 BASIC5.07□□□□□ -1.6
HMGB1P09429 AC068831.4-201ENST00000556118 109 ntBASIC5.07□□□□□ -1.6
HMGB1P09429 LINC02157-201ENST00000558885 447 ntTSL 5 BASIC5.07□□□□□ -1.6
HMGB1P09429 AC009097.3-201ENST00000563557 1018 ntBASIC5.07□□□□□ -1.6
HMGB1P09429 AC060771.1-201ENST00000582031 164 ntBASIC5.07□□□□□ -1.6
HMGB1P09429 AL157938.2-203ENST00000589540 931 ntTSL 5 BASIC5.07□□□□□ -1.6
HMGB1P09429 MIR432-201ENST00000606207 94 ntBASIC5.07□□□□□ -1.6
HMGB1P09429 SNORA51-201ENST00000606420 132 ntBASIC5.07□□□□□ -1.6
HMGB1P09429 AC097468.3-201ENST00000607956 456 ntBASIC5.07□□□□□ -1.6
HMGB1P09429 RN7SL722P-201ENST00000617780 284 ntBASIC5.07□□□□□ -1.6
HMGB1P09429 RN7SL565P-201ENST00000618246 284 ntBASIC5.07□□□□□ -1.6
HMGB1P09429 AP000346.3-201ENST00000622821 210 ntBASIC5.07□□□□□ -1.6
HMGB1P09429 AC027309.3-201ENST00000623419 351 ntBASIC5.07□□□□□ -1.6
HMGB1P09429 LINC01002-227ENST00000633363 541 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
HMGB1P09429 ZNF43-207ENST00000595461 3399 ntAPPRIS ALT2 TSL 1 (best) BASIC5.07□□□□□ -1.6
HMGB1P09429 NRIP1-201ENST00000318948 7556 ntAPPRIS P1 TSL 2 BASIC5.07□□□□□ -1.6
HMGB1P09429 DGKI-204ENST00000453654 12928 ntAPPRIS ALT2 TSL 1 (best) BASIC5.07□□□□□ -1.6
HMGB1P09429 STEAP4-201ENST00000301959 2321 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
HMGB1P09429 AC118273.1-201ENST00000525324 3006 ntBASIC5.07□□□□□ -1.6
HMGB1P09429 SNCA-213ENST00000618500 3022 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
HMGB1P09429 DTHD1-202ENST00000456874 3365 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
HMGB1P09429 SENP7-204ENST00000394085 1483 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
HMGB1P09429 FER-201ENST00000281092 12119 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
HMGB1P09429 FEZ2-201ENST00000305852 1782 ntTSL 5 BASIC5.06□□□□□ -1.6
HMGB1P09429 THOC2-202ENST00000355725 4930 ntAPPRIS P1 TSL 5 BASIC5.06□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 124.6 ms