Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 RPL21P134-201ENST00000453468 483 ntBASIC3.4□□□□□ -1.87
HOXD4P09016 ANKRD26P4-201ENST00000455755 950 ntBASIC3.4□□□□□ -1.87
HOXD4P09016 snoU13.7-201ENST00000459220 104 ntBASIC3.4□□□□□ -1.87
HOXD4P09016 RPL9P32-201ENST00000464118 620 ntBASIC3.4□□□□□ -1.87
HOXD4P09016 PLGLA-201ENST00000465668 449 ntBASIC3.4□□□□□ -1.87
HOXD4P09016 C1orf185-202ENST00000467127 747 ntAPPRIS ALT2 TSL 3 BASIC3.4□□□□□ -1.87
HOXD4P09016 AC108734.3-201ENST00000481241 1165 ntBASIC3.4□□□□□ -1.87
HOXD4P09016 AC011352.3-201ENST00000505162 593 ntBASIC3.4□□□□□ -1.87
HOXD4P09016 AC107398.2-201ENST00000508081 601 ntTSL 5 BASIC3.4□□□□□ -1.87
HOXD4P09016 MTCYBP16-201ENST00000509187 1129 ntBASIC3.4□□□□□ -1.87
HOXD4P09016 AC116353.3-201ENST00000511215 249 ntBASIC3.4□□□□□ -1.87
HOXD4P09016 PHBP14-201ENST00000512887 367 ntBASIC3.4□□□□□ -1.87
HOXD4P09016 RNU4ATAC15P-201ENST00000516415 126 ntBASIC3.4□□□□□ -1.87
HOXD4P09016 LYRM2-203ENST00000520318 677 ntTSL 2 BASIC3.4□□□□□ -1.87
HOXD4P09016 AC093331.1-201ENST00000521474 169 ntBASIC3.4□□□□□ -1.87
HOXD4P09016 AF279873.1-201ENST00000523393 313 ntBASIC3.4□□□□□ -1.87
HOXD4P09016 AP000926.4-201ENST00000527351 454 ntBASIC3.4□□□□□ -1.87
HOXD4P09016 AC118942.1-202ENST00000529081 578 ntTSL 5 BASIC3.4□□□□□ -1.87
HOXD4P09016 DUXAP1-201ENST00000556632 463 ntBASIC3.4□□□□□ -1.87
HOXD4P09016 AC087465.1-201ENST00000560574 245 ntBASIC3.4□□□□□ -1.87
HOXD4P09016 AC092326.1-201ENST00000567465 674 ntTSL 3 BASIC3.4□□□□□ -1.87
HOXD4P09016 AC022601.1-201ENST00000596954 577 ntTSL 4 BASIC3.4□□□□□ -1.87
HOXD4P09016 AL355376.2-201ENST00000603866 267 ntTSL 5 BASIC3.4□□□□□ -1.87
HOXD4P09016 AC091488.1-201ENST00000604239 660 ntBASIC3.4□□□□□ -1.87
HOXD4P09016 DPRXP5-201ENST00000604662 539 ntBASIC3.4□□□□□ -1.87
HOXD4P09016 AL360219.1-201ENST00000610230 366 ntBASIC3.4□□□□□ -1.87
HOXD4P09016 AC244472.1-201ENST00000620773 347 ntAPPRIS P1 BASIC3.4□□□□□ -1.87
HOXD4P09016 AC078883.4-201ENST00000623218 367 ntBASIC3.4□□□□□ -1.87
HOXD4P09016 AP000676.3-201ENST00000623299 569 ntBASIC3.4□□□□□ -1.87
HOXD4P09016 AC073530.2-201ENST00000623987 261 ntBASIC3.4□□□□□ -1.87
HOXD4P09016 AC244517.5-201ENST00000624139 722 ntTSL 3 BASIC3.4□□□□□ -1.87
HOXD4P09016 LINC02086-205ENST00000628749 679 ntTSL 5 BASIC3.4□□□□□ -1.87
HOXD4P09016 ATM-203ENST00000452508 12954 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
HOXD4P09016 AC109315.1-201ENST00000584143 1347 ntBASIC3.4□□□□□ -1.87
HOXD4P09016 TPTE2-202ENST00000382978 1677 ntTSL 5 BASIC3.39□□□□□ -1.87
HOXD4P09016 AC032011.1-201ENST00000611703 1549 ntBASIC3.39□□□□□ -1.87
HOXD4P09016 CKAP5-201ENST00000312055 6532 ntTSL 5 BASIC3.39□□□□□ -1.87
HOXD4P09016 SAMD9-201ENST00000379958 6852 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
HOXD4P09016 IPO8P1-201ENST00000455509 3109 ntBASIC3.39□□□□□ -1.87
HOXD4P09016 Y_RNA.408-201ENST00000383987 102 ntBASIC3.39□□□□□ -1.87
HOXD4P09016 SNORD116-8-201ENST00000384365 95 ntBASIC3.39□□□□□ -1.87
HOXD4P09016 TRAJ16-201ENST00000390521 60 ntAPPRIS P1 BASIC3.39□□□□□ -1.87
HOXD4P09016 LINC02089-201ENST00000412360 682 ntTSL 2 BASIC3.39□□□□□ -1.87
HOXD4P09016 EPGN-202ENST00000413830 1196 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
HOXD4P09016 AC092155.1-202ENST00000416111 932 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
HOXD4P09016 AC007349.1-201ENST00000419326 587 ntTSL 4 BASIC3.39□□□□□ -1.87
HOXD4P09016 MRPS36P1-201ENST00000421291 307 ntBASIC3.39□□□□□ -1.87
HOXD4P09016 AP000695.2-201ENST00000428667 715 ntTSL 5 BASIC3.39□□□□□ -1.87
HOXD4P09016 AL355303.1-201ENST00000428920 680 ntTSL 3 BASIC3.39□□□□□ -1.87
HOXD4P09016 AC004865.1-201ENST00000442276 1003 ntBASIC3.39□□□□□ -1.87
HOXD4P09016 AC007099.2-201ENST00000444852 336 ntTSL 5 BASIC3.39□□□□□ -1.87
HOXD4P09016 AC004160.1-211ENST00000445839 565 ntTSL 4 BASIC3.39□□□□□ -1.87
HOXD4P09016 RPS29P31-201ENST00000446147 164 ntBASIC3.39□□□□□ -1.87
HOXD4P09016 RPL29P29-201ENST00000448725 423 ntBASIC3.39□□□□□ -1.87
HOXD4P09016 AF127577.5-201ENST00000449746 446 ntTSL 3 BASIC3.39□□□□□ -1.87
HOXD4P09016 AC099566.1-212ENST00000451675 799 ntTSL 3 BASIC3.39□□□□□ -1.87
HOXD4P09016 RFC5P1-201ENST00000454419 874 ntBASIC3.39□□□□□ -1.87
HOXD4P09016 LINC00377-201ENST00000456588 657 ntTSL 5 BASIC3.39□□□□□ -1.87
HOXD4P09016 RN7SL293P-201ENST00000481765 281 ntBASIC3.39□□□□□ -1.87
HOXD4P09016 AP001086.1-201ENST00000494882 321 ntBASIC3.39□□□□□ -1.87
HOXD4P09016 AC114912.1-201ENST00000503394 546 ntTSL 3 BASIC3.39□□□□□ -1.87
HOXD4P09016 PGRMC2-204ENST00000503872 1028 ntTSL 3 BASIC3.39□□□□□ -1.87
HOXD4P09016 AC100773.1-201ENST00000505409 520 ntTSL 5 BASIC3.39□□□□□ -1.87
HOXD4P09016 SNX5P1-201ENST00000505757 1041 ntBASIC3.39□□□□□ -1.87
HOXD4P09016 LINC02118-201ENST00000505899 407 ntTSL 3 BASIC3.39□□□□□ -1.87
HOXD4P09016 AC074250.1-201ENST00000511117 192 ntBASIC3.39□□□□□ -1.87
HOXD4P09016 LINC02241-202ENST00000512688 467 ntTSL 3 BASIC3.39□□□□□ -1.87
HOXD4P09016 ABCA17P-206ENST00000512848 467 ntTSL 2 BASIC3.39□□□□□ -1.87
HOXD4P09016 MRPS33P3-201ENST00000513456 322 ntBASIC3.39□□□□□ -1.87
HOXD4P09016 RNU6-885P-201ENST00000516607 104 ntBASIC3.39□□□□□ -1.87
HOXD4P09016 SCARNA14-201ENST00000516903 136 ntBASIC3.39□□□□□ -1.87
HOXD4P09016 AC087808.1-201ENST00000520501 361 ntBASIC3.39□□□□□ -1.87
HOXD4P09016 HIGD1AP6-201ENST00000521833 279 ntBASIC3.39□□□□□ -1.87
HOXD4P09016 AP003730.2-201ENST00000526385 546 ntTSL 3 BASIC3.39□□□□□ -1.87
HOXD4P09016 AC007876.1-201ENST00000527562 983 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
HOXD4P09016 AP003461.1-201ENST00000528866 78 ntBASIC3.39□□□□□ -1.87
HOXD4P09016 STX3-204ENST00000530221 534 ntTSL 5 BASIC3.39□□□□□ -1.87
HOXD4P09016 GTF2IP22-201ENST00000554443 182 ntBASIC3.39□□□□□ -1.87
HOXD4P09016 MIR4425-201ENST00000580572 84 ntBASIC3.39□□□□□ -1.87
HOXD4P09016 AC090403.1-205ENST00000580883 516 ntTSL 2 BASIC3.39□□□□□ -1.87
HOXD4P09016 AC025682.1-201ENST00000582389 437 ntTSL 5 BASIC3.39□□□□□ -1.87
HOXD4P09016 LINC01909-202ENST00000584919 815 ntTSL 3 BASIC3.39□□□□□ -1.87
HOXD4P09016 AC008946.1-201ENST00000599756 421 ntTSL 3 BASIC3.39□□□□□ -1.87
HOXD4P09016 BNIP3P26-201ENST00000600827 554 ntBASIC3.39□□□□□ -1.87
HOXD4P09016 AL589740.1-208ENST00000606913 812 ntTSL 5 BASIC3.39□□□□□ -1.87
HOXD4P09016 AL451074.6-201ENST00000608512 729 ntBASIC3.39□□□□□ -1.87
HOXD4P09016 MESTIT1_2.1-201ENST00000616328 235 ntBASIC3.39□□□□□ -1.87
HOXD4P09016 CGA-204ENST00000627148 1010 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
HOXD4P09016 U6.105-201ENST00000637379 88 ntBASIC3.39□□□□□ -1.87
HOXD4P09016 DTWD2-201ENST00000304058 4365 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
HOXD4P09016 SYNE1-207ENST00000367255 27748 ntAPPRIS P4 TSL 1 (best) BASIC3.39□□□□□ -1.87
HOXD4P09016 RTKN2-202ENST00000373789 6641 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
HOXD4P09016 Z99496.1-201ENST00000469424 1477 ntBASIC3.39□□□□□ -1.87
HOXD4P09016 DCAF13P1-201ENST00000495256 1330 ntBASIC3.39□□□□□ -1.87
HOXD4P09016 ARHGAP28-202ENST00000314319 5415 ntAPPRIS P2 TSL 5 BASIC3.39□□□□□ -1.87
HOXD4P09016 MTCO1P12-201ENST00000414273 1543 ntBASIC3.39□□□□□ -1.87
HOXD4P09016 TAX1BP1-213ENST00000543117 3365 ntAPPRIS ALT2 TSL 2 BASIC3.38□□□□□ -1.87
HOXD4P09016 MTND5P1-201ENST00000445440 1375 ntBASIC3.38□□□□□ -1.87
HOXD4P09016 PAPPA-AS1-201ENST00000445861 2450 ntBASIC3.38□□□□□ -1.87
HOXD4P09016 MBNL1-224ENST00000545754 5147 ntTSL 5 BASIC3.38□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 99.3 ms