Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 RNU6-516P-201ENST00000411381 104 ntBASIC5.88□□□□□ -1.47
USP3Q9Y6I4 AC096921.1-201ENST00000411661 375 ntBASIC5.88□□□□□ -1.47
USP3Q9Y6I4 RPL31P2-201ENST00000413849 377 ntBASIC5.88□□□□□ -1.47
USP3Q9Y6I4 AC092162.1-201ENST00000432828 434 ntBASIC5.88□□□□□ -1.47
USP3Q9Y6I4 AL080284.1-201ENST00000434493 442 ntTSL 2 BASIC5.88□□□□□ -1.47
USP3Q9Y6I4 AL390119.1-201ENST00000440329 312 ntBASIC5.88□□□□□ -1.47
USP3Q9Y6I4 AC012070.1-201ENST00000442062 427 ntTSL 3 BASIC5.88□□□□□ -1.47
USP3Q9Y6I4 AC104634.1-201ENST00000452720 462 ntBASIC5.88□□□□□ -1.47
USP3Q9Y6I4 AL356289.2-201ENST00000455238 292 ntTSL 5 BASIC5.88□□□□□ -1.47
USP3Q9Y6I4 LINC02540-201ENST00000455554 570 ntTSL 3 BASIC5.88□□□□□ -1.47
USP3Q9Y6I4 RNU7-167P-201ENST00000459160 62 ntBASIC5.88□□□□□ -1.47
USP3Q9Y6I4 EPDR1-204ENST00000476620 555 ntTSL 4 BASIC5.88□□□□□ -1.47
USP3Q9Y6I4 RPS17P5-201ENST00000498293 408 ntBASIC5.88□□□□□ -1.47
USP3Q9Y6I4 SNORA14.1-201ENST00000516113 141 ntBASIC5.88□□□□□ -1.47
USP3Q9Y6I4 RNU6-1069P-201ENST00000516612 133 ntBASIC5.88□□□□□ -1.47
USP3Q9Y6I4 IGKV2-19-201ENST00000518132 283 ntBASIC5.88□□□□□ -1.47
USP3Q9Y6I4 AL133271.1-201ENST00000538229 291 ntBASIC5.88□□□□□ -1.47
USP3Q9Y6I4 APAF1-207ENST00000547743 651 ntTSL 3 BASIC5.88□□□□□ -1.47
USP3Q9Y6I4 LINC02286-201ENST00000552425 285 ntTSL 2 BASIC5.88□□□□□ -1.47
USP3Q9Y6I4 AC015720.2-201ENST00000567709 334 ntBASIC5.88□□□□□ -1.47
USP3Q9Y6I4 MIR4293-201ENST00000584305 78 ntBASIC5.88□□□□□ -1.47
USP3Q9Y6I4 MIR6768-201ENST00000610734 72 ntBASIC5.88□□□□□ -1.47
USP3Q9Y6I4 AC243312.2-201ENST00000623340 601 ntBASIC5.88□□□□□ -1.47
USP3Q9Y6I4 LINC00706-201ENST00000628989 699 ntTSL 3 BASIC5.88□□□□□ -1.47
USP3Q9Y6I4 AL355480.1-201ENST00000629041 99 ntBASIC5.88□□□□□ -1.47
USP3Q9Y6I4 AC109780.1-201ENST00000451768 1344 ntBASIC5.88□□□□□ -1.47
USP3Q9Y6I4 AL160286.3-201ENST00000569644 3294 ntTSL 2 BASIC5.88□□□□□ -1.47
USP3Q9Y6I4 AC087258.1-203ENST00000545400 1629 ntTSL 2 BASIC5.88□□□□□ -1.47
USP3Q9Y6I4 LINC02203-203ENST00000625989 1600 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
USP3Q9Y6I4 OR2AT4-204ENST00000641593 8733 ntAPPRIS P1 BASIC5.88□□□□□ -1.47
USP3Q9Y6I4 PTBP3-202ENST00000334318 7990 ntAPPRIS ALT1 TSL 1 (best) BASIC5.88□□□□□ -1.47
USP3Q9Y6I4 AASDH-210ENST00000602986 3480 ntTSL 5 BASIC5.87□□□□□ -1.47
USP3Q9Y6I4 NBPF20-205ENST00000622803 3689 ntTSL 5 BASIC5.87□□□□□ -1.47
USP3Q9Y6I4 PTPRB-210ENST00000551525 5291 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
USP3Q9Y6I4 MAK-204ENST00000536370 3767 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
USP3Q9Y6I4 PTPRO-210ENST00000544244 3978 ntAPPRIS ALT2 TSL 2 BASIC5.87□□□□□ -1.47
USP3Q9Y6I4 MKL2-202ENST00000571589 8799 ntAPPRIS ALT2 TSL 2 BASIC5.87□□□□□ -1.47
USP3Q9Y6I4 HHLA2-209ENST00000489514 2406 ntAPPRIS P3 TSL 1 (best) BASIC5.87□□□□□ -1.47
USP3Q9Y6I4 OR2M2-201ENST00000359682 1044 ntAPPRIS P1 BASIC5.87□□□□□ -1.47
USP3Q9Y6I4 RNA5-8SP7-201ENST00000363443 155 ntBASIC5.87□□□□□ -1.47
USP3Q9Y6I4 RNU6-188P-201ENST00000364207 107 ntBASIC5.87□□□□□ -1.47
USP3Q9Y6I4 AL109755.1-201ENST00000401791 649 ntBASIC5.87□□□□□ -1.47
USP3Q9Y6I4 AL009179.1-201ENST00000406085 265 ntBASIC5.87□□□□□ -1.47
USP3Q9Y6I4 AC079355.1-201ENST00000421770 223 ntBASIC5.87□□□□□ -1.47
USP3Q9Y6I4 AC007161.1-204ENST00000423039 460 ntBASIC5.87□□□□□ -1.47
USP3Q9Y6I4 AL513365.2-201ENST00000423060 529 ntTSL 2 BASIC5.87□□□□□ -1.47
USP3Q9Y6I4 AL360227.1-201ENST00000425364 433 ntTSL 3 BASIC5.87□□□□□ -1.47
USP3Q9Y6I4 AC068481.1-202ENST00000428379 555 ntTSL 4 BASIC5.87□□□□□ -1.47
USP3Q9Y6I4 AC236972.1-201ENST00000433225 199 ntBASIC5.87□□□□□ -1.47
USP3Q9Y6I4 AC099799.1-201ENST00000439809 192 ntBASIC5.87□□□□□ -1.47
USP3Q9Y6I4 PLCB1-IT1-201ENST00000441231 373 ntTSL 3 BASIC5.87□□□□□ -1.47
USP3Q9Y6I4 AC245028.2-201ENST00000458673 253 ntBASIC5.87□□□□□ -1.47
USP3Q9Y6I4 PPP1R11P1-201ENST00000486095 376 ntBASIC5.87□□□□□ -1.47
USP3Q9Y6I4 HMGB1P21-201ENST00000502313 581 ntBASIC5.87□□□□□ -1.47
USP3Q9Y6I4 AC092542.1-201ENST00000513155 355 ntTSL 2 BASIC5.87□□□□□ -1.47
USP3Q9Y6I4 GAPDHP62-201ENST00000515313 990 ntBASIC5.87□□□□□ -1.47
USP3Q9Y6I4 RNA5SP362-201ENST00000516048 118 ntBASIC5.87□□□□□ -1.47
USP3Q9Y6I4 Y_RNA.670-201ENST00000516255 105 ntBASIC5.87□□□□□ -1.47
USP3Q9Y6I4 AC136777.2-201ENST00000522979 358 ntBASIC5.87□□□□□ -1.47
USP3Q9Y6I4 AC022616.4-201ENST00000522985 181 ntBASIC5.87□□□□□ -1.47
USP3Q9Y6I4 AL121576.1-201ENST00000556055 276 ntBASIC5.87□□□□□ -1.47
USP3Q9Y6I4 LINC00933-205ENST00000560917 449 ntTSL 3 BASIC5.87□□□□□ -1.47
USP3Q9Y6I4 MIR4420-201ENST00000583944 77 ntBASIC5.87□□□□□ -1.47
USP3Q9Y6I4 MIR5692C1-201ENST00000585309 91 ntBASIC5.87□□□□□ -1.47
USP3Q9Y6I4 AC010649.1-203ENST00000592230 454 ntTSL 2 BASIC5.87□□□□□ -1.47
USP3Q9Y6I4 SLC14A2-AS1-204ENST00000592899 359 ntTSL 3 BASIC5.87□□□□□ -1.47
USP3Q9Y6I4 AL031320.1-201ENST00000604177 357 ntBASIC5.87□□□□□ -1.47
USP3Q9Y6I4 AL049767.1-202ENST00000637826 242 ntBASIC5.87□□□□□ -1.47
USP3Q9Y6I4 GVQW2-203ENST00000641401 327 ntAPPRIS P1 BASIC5.87□□□□□ -1.47
USP3Q9Y6I4 ECT2L-205ENST00000541398 4483 ntAPPRIS P1 TSL 5 BASIC5.87□□□□□ -1.47
USP3Q9Y6I4 BCL2L14-213ENST00000589718 1850 ntAPPRIS P1 TSL 5 BASIC5.87□□□□□ -1.47
USP3Q9Y6I4 PROS2P-201ENST00000474651 1951 ntBASIC5.87□□□□□ -1.47
USP3Q9Y6I4 MUC15-205ENST00000529533 2084 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
USP3Q9Y6I4 DLGAP5-202ENST00000395425 2954 ntAPPRIS ALT2 TSL 1 (best) BASIC5.87□□□□□ -1.47
USP3Q9Y6I4 AC007681.1-201ENST00000604271 3438 ntTSL 4 BASIC5.87□□□□□ -1.47
USP3Q9Y6I4 SCAPER-207ENST00000563290 5028 ntAPPRIS P1 TSL 5 BASIC5.87□□□□□ -1.47
USP3Q9Y6I4 AQP4-201ENST00000383168 5274 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
USP3Q9Y6I4 AHNAK2-201ENST00000333244 18254 ntAPPRIS P1 TSL 5 BASIC5.87□□□□□ -1.47
USP3Q9Y6I4 USP15-201ENST00000280377 4748 ntAPPRIS ALT1 TSL 1 (best) BASIC5.86□□□□□ -1.47
USP3Q9Y6I4 GHR-211ENST00000618088 4491 ntAPPRIS P1 TSL 5 BASIC5.86□□□□□ -1.47
USP3Q9Y6I4 SLC12A6-204ENST00000397707 4194 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
USP3Q9Y6I4 AC004076.2-201ENST00000620532 3323 ntBASIC5.86□□□□□ -1.47
USP3Q9Y6I4 ABCB5-201ENST00000258738 2906 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
USP3Q9Y6I4 SYCP2L-207ENST00000543878 2436 ntAPPRIS ALT2 TSL 5 BASIC5.86□□□□□ -1.47
USP3Q9Y6I4 SETDB2-201ENST00000258672 2138 ntTSL 5 BASIC5.86□□□□□ -1.47
USP3Q9Y6I4 C1orf141-202ENST00000371006 2053 ntAPPRIS P3 TSL 2 BASIC5.86□□□□□ -1.47
USP3Q9Y6I4 CDC27P3-201ENST00000635418 1910 ntBASIC5.86□□□□□ -1.47
USP3Q9Y6I4 AL031119.1-201ENST00000404707 1879 ntBASIC5.86□□□□□ -1.47
USP3Q9Y6I4 GVINP1-201ENST00000526769 8438 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
USP3Q9Y6I4 MTCO1P24-201ENST00000515438 1558 ntBASIC5.86□□□□□ -1.47
USP3Q9Y6I4 WDR17-204ENST00000507824 4119 ntTSL 5 BASIC5.86□□□□□ -1.47
USP3Q9Y6I4 AL121886.1-201ENST00000358609 435 ntBASIC5.86□□□□□ -1.47
USP3Q9Y6I4 Y_RNA.404-201ENST00000383978 102 ntBASIC5.86□□□□□ -1.47
USP3Q9Y6I4 MIR323B-201ENST00000385269 82 ntBASIC5.86□□□□□ -1.47
USP3Q9Y6I4 RNU6-293P-201ENST00000411259 106 ntBASIC5.86□□□□□ -1.47
USP3Q9Y6I4 AL133343.3-201ENST00000413983 469 ntTSL 2 BASIC5.86□□□□□ -1.47
USP3Q9Y6I4 AC073521.1-201ENST00000418679 625 ntTSL 3 BASIC5.86□□□□□ -1.47
USP3Q9Y6I4 RPL9P9-201ENST00000418824 636 ntTSL 2 BASIC5.86□□□□□ -1.47
USP3Q9Y6I4 AL669831.1-202ENST00000428504 417 ntBASIC5.86□□□□□ -1.47
USP3Q9Y6I4 OR6D1P-201ENST00000436165 939 ntBASIC5.86□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 80.9 ms