Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 AC027343.1-201ENST00000504765 407 ntTSL 4 BASIC4.87□□□□□ -1.63
LIMCH1Q9UPQ0 AC096577.1-203ENST00000506386 541 ntTSL 3 BASIC4.87□□□□□ -1.63
LIMCH1Q9UPQ0 RN7SKP298-201ENST00000515950 94 ntBASIC4.87□□□□□ -1.63
LIMCH1Q9UPQ0 TRIQK-207ENST00000519069 598 ntTSL 4 BASIC4.87□□□□□ -1.63
LIMCH1Q9UPQ0 AC024958.1-201ENST00000519364 902 ntTSL 5 BASIC4.87□□□□□ -1.63
LIMCH1Q9UPQ0 AC026991.1-201ENST00000520815 463 ntTSL 3 BASIC4.87□□□□□ -1.63
LIMCH1Q9UPQ0 AF117829.1-202ENST00000524166 836 ntTSL 3 BASIC4.87□□□□□ -1.63
LIMCH1Q9UPQ0 AC078962.4-201ENST00000546135 254 ntTSL 3 BASIC4.87□□□□□ -1.63
LIMCH1Q9UPQ0 AL163973.3-201ENST00000547093 430 ntTSL 3 BASIC4.87□□□□□ -1.63
LIMCH1Q9UPQ0 TMEM106C-220ENST00000552561 810 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
LIMCH1Q9UPQ0 AC023034.1-202ENST00000558153 684 ntTSL 3 BASIC4.87□□□□□ -1.63
LIMCH1Q9UPQ0 AC012378.1-201ENST00000561155 364 ntTSL 3 BASIC4.87□□□□□ -1.63
LIMCH1Q9UPQ0 LINC01584-202ENST00000563990 852 ntTSL 3 BASIC4.87□□□□□ -1.63
LIMCH1Q9UPQ0 AC022655.2-201ENST00000577280 318 ntBASIC4.87□□□□□ -1.63
LIMCH1Q9UPQ0 BBIP1P1-201ENST00000602999 279 ntBASIC4.87□□□□□ -1.63
LIMCH1Q9UPQ0 AL513477.2-201ENST00000607858 568 ntBASIC4.87□□□□□ -1.63
LIMCH1Q9UPQ0 AL589743.7-201ENST00000612637 233 ntBASIC4.87□□□□□ -1.63
LIMCH1Q9UPQ0 AC009318.4-201ENST00000620496 486 ntBASIC4.87□□□□□ -1.63
LIMCH1Q9UPQ0 AC000123.2-201ENST00000623124 461 ntBASIC4.87□□□□□ -1.63
LIMCH1Q9UPQ0 AL603839.4-201ENST00000624658 1005 ntBASIC4.87□□□□□ -1.63
LIMCH1Q9UPQ0 AL773545.4-201ENST00000637262 310 ntBASIC4.87□□□□□ -1.63
LIMCH1Q9UPQ0 CRYM-AS1-204ENST00000637983 556 ntBASIC4.87□□□□□ -1.63
LIMCH1Q9UPQ0 OR11H4-203ENST00000641525 1082 ntAPPRIS P1 BASIC4.87□□□□□ -1.63
LIMCH1Q9UPQ0 AL513478.4-201ENST00000641636 310 ntBASIC4.87□□□□□ -1.63
LIMCH1Q9UPQ0 ZNF382-203ENST00000435416 3865 ntAPPRIS ALT1 TSL 1 (best) BASIC4.87□□□□□ -1.63
LIMCH1Q9UPQ0 PSMD6-202ENST00000394431 1349 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
LIMCH1Q9UPQ0 CDR1-201ENST00000370532 2467 ntAPPRIS P1 BASIC4.87□□□□□ -1.63
LIMCH1Q9UPQ0 LINC02120-201ENST00000505518 2008 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
LIMCH1Q9UPQ0 ZNF733P-201ENST00000331425 1506 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
LIMCH1Q9UPQ0 AC027514.1-201ENST00000588561 1603 ntBASIC4.86□□□□□ -1.63
LIMCH1Q9UPQ0 CFHR4-204ENST00000608469 1601 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
LIMCH1Q9UPQ0 CCDC14-217ENST00000485727 7917 ntAPPRIS ALT2 TSL 1 (best) BASIC4.86□□□□□ -1.63
LIMCH1Q9UPQ0 LRRC9-202ENST00000445360 4717 ntAPPRIS P1 TSL 5 BASIC4.86□□□□□ -1.63
LIMCH1Q9UPQ0 RNU6-777P-201ENST00000364265 104 ntBASIC4.86□□□□□ -1.63
LIMCH1Q9UPQ0 RNA5SP513-201ENST00000364648 118 ntBASIC4.86□□□□□ -1.63
LIMCH1Q9UPQ0 C1orf189-201ENST00000368525 387 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
LIMCH1Q9UPQ0 RNU6-348P-201ENST00000384386 107 ntBASIC4.86□□□□□ -1.63
LIMCH1Q9UPQ0 RN7SKP33-201ENST00000410942 340 ntBASIC4.86□□□□□ -1.63
LIMCH1Q9UPQ0 AC105271.1-202ENST00000411417 445 ntTSL 3 BASIC4.86□□□□□ -1.63
LIMCH1Q9UPQ0 MTCO1P17-201ENST00000411522 491 ntBASIC4.86□□□□□ -1.63
LIMCH1Q9UPQ0 AC008440.2-201ENST00000413496 423 ntTSL 5 BASIC4.86□□□□□ -1.63
LIMCH1Q9UPQ0 USP9YP13-201ENST00000417797 480 ntBASIC4.86□□□□□ -1.63
LIMCH1Q9UPQ0 AP001136.1-201ENST00000425058 635 ntTSL 2 BASIC4.86□□□□□ -1.63
LIMCH1Q9UPQ0 AL732292.1-201ENST00000426692 226 ntBASIC4.86□□□□□ -1.63
LIMCH1Q9UPQ0 AC008065.1-201ENST00000428525 348 ntBASIC4.86□□□□□ -1.63
LIMCH1Q9UPQ0 OFD1P13Y-201ENST00000431179 1232 ntBASIC4.86□□□□□ -1.63
LIMCH1Q9UPQ0 AC104653.2-201ENST00000435407 416 ntTSL 3 BASIC4.86□□□□□ -1.63
LIMCH1Q9UPQ0 LINC01307-201ENST00000439146 474 ntTSL 3 BASIC4.86□□□□□ -1.63
LIMCH1Q9UPQ0 AL929236.1-201ENST00000443622 518 ntTSL 3 BASIC4.86□□□□□ -1.63
LIMCH1Q9UPQ0 AL451050.1-201ENST00000450126 415 ntBASIC4.86□□□□□ -1.63
LIMCH1Q9UPQ0 AC009963.2-201ENST00000453431 138 ntBASIC4.86□□□□□ -1.63
LIMCH1Q9UPQ0 TPT1P7-201ENST00000458300 517 ntBASIC4.86□□□□□ -1.63
LIMCH1Q9UPQ0 AC013356.1-201ENST00000489027 564 ntBASIC4.86□□□□□ -1.63
LIMCH1Q9UPQ0 AC093725.2-201ENST00000507808 356 ntTSL 2 BASIC4.86□□□□□ -1.63
LIMCH1Q9UPQ0 AF131216.2-201ENST00000512316 564 ntBASIC4.86□□□□□ -1.63
LIMCH1Q9UPQ0 AC108064.1-201ENST00000513791 460 ntBASIC4.86□□□□□ -1.63
LIMCH1Q9UPQ0 AC034159.1-201ENST00000513885 583 ntBASIC4.86□□□□□ -1.63
LIMCH1Q9UPQ0 RNU4ATAC6P-201ENST00000516592 126 ntBASIC4.86□□□□□ -1.63
LIMCH1Q9UPQ0 RNU7-143P-201ENST00000516781 65 ntBASIC4.86□□□□□ -1.63
LIMCH1Q9UPQ0 AC009652.2-201ENST00000527978 516 ntTSL 5 BASIC4.86□□□□□ -1.63
LIMCH1Q9UPQ0 AC022878.1-201ENST00000530684 149 ntBASIC4.86□□□□□ -1.63
LIMCH1Q9UPQ0 AC116535.2-201ENST00000532365 441 ntTSL 5 BASIC4.86□□□□□ -1.63
LIMCH1Q9UPQ0 AC016987.2-201ENST00000560696 351 ntTSL 3 BASIC4.86□□□□□ -1.63
LIMCH1Q9UPQ0 MIR4528-201ENST00000577763 90 ntBASIC4.86□□□□□ -1.63
LIMCH1Q9UPQ0 AC053481.3-201ENST00000577881 843 ntBASIC4.86□□□□□ -1.63
LIMCH1Q9UPQ0 AC012417.1-201ENST00000582307 1039 ntBASIC4.86□□□□□ -1.63
LIMCH1Q9UPQ0 BNIP3P8-201ENST00000597863 560 ntBASIC4.86□□□□□ -1.63
LIMCH1Q9UPQ0 AC104662.1-201ENST00000604448 511 ntBASIC4.86□□□□□ -1.63
LIMCH1Q9UPQ0 RNF219-AS1-205ENST00000605996 792 ntTSL 5 BASIC4.86□□□□□ -1.63
LIMCH1Q9UPQ0 MIR4727-201ENST00000622232 55 ntBASIC4.86□□□□□ -1.63
LIMCH1Q9UPQ0 BMS1P21-201ENST00000634565 365 ntBASIC4.86□□□□□ -1.63
LIMCH1Q9UPQ0 DOCK7-219ENST00000635253 6423 ntAPPRIS ALT2 TSL 5 BASIC4.86□□□□□ -1.63
LIMCH1Q9UPQ0 AL133243.3-201ENST00000617415 3004 ntBASIC4.86□□□□□ -1.63
LIMCH1Q9UPQ0 PTPN12-206ENST00000435495 2526 ntTSL 2 BASIC4.86□□□□□ -1.63
LIMCH1Q9UPQ0 SYNE2-204ENST00000358025 21842 ntAPPRIS P3 TSL 5 BASIC4.86□□□□□ -1.63
LIMCH1Q9UPQ0 KIFAP3-202ENST00000367765 4111 ntTSL 2 BASIC4.86□□□□□ -1.63
LIMCH1Q9UPQ0 PIGN-240ENST00000639912 6530 ntTSL 5 BASIC4.86□□□□□ -1.63
LIMCH1Q9UPQ0 AC139713.2-214ENST00000642059 1811 ntBASIC4.86□□□□□ -1.63
LIMCH1Q9UPQ0 OTUD6B-AS1-201ENST00000522817 4275 ntTSL 2 BASIC4.86□□□□□ -1.63
LIMCH1Q9UPQ0 MT-ND3-201ENST00000361227 346 ntAPPRIS P1 BASIC4.85□□□□□ -1.63
LIMCH1Q9UPQ0 TEX35-205ENST00000367643 802 ntAPPRIS ALT2 TSL 2 BASIC4.85□□□□□ -1.63
LIMCH1Q9UPQ0 RNU6-769P-201ENST00000384407 104 ntBASIC4.85□□□□□ -1.63
LIMCH1Q9UPQ0 SNORA40.3-201ENST00000390964 122 ntBASIC4.85□□□□□ -1.63
LIMCH1Q9UPQ0 CXCL8-202ENST00000401931 700 ntAPPRIS ALT1 TSL 1 (best) BASIC4.85□□□□□ -1.63
LIMCH1Q9UPQ0 RNU2-66P-201ENST00000410650 161 ntBASIC4.85□□□□□ -1.63
LIMCH1Q9UPQ0 AC010163.2-201ENST00000416341 381 ntTSL 2 BASIC4.85□□□□□ -1.63
LIMCH1Q9UPQ0 AL513174.1-201ENST00000423182 629 ntBASIC4.85□□□□□ -1.63
LIMCH1Q9UPQ0 AL356583.2-201ENST00000426536 280 ntBASIC4.85□□□□□ -1.63
LIMCH1Q9UPQ0 ARPP21-211ENST00000427542 568 ntTSL 4 BASIC4.85□□□□□ -1.63
LIMCH1Q9UPQ0 AC010975.2-201ENST00000427781 588 ntBASIC4.85□□□□□ -1.63
LIMCH1Q9UPQ0 OR4F13P-201ENST00000428478 931 ntBASIC4.85□□□□□ -1.63
LIMCH1Q9UPQ0 AC011742.1-201ENST00000431448 434 ntBASIC4.85□□□□□ -1.63
LIMCH1Q9UPQ0 AC006011.1-201ENST00000442758 349 ntBASIC4.85□□□□□ -1.63
LIMCH1Q9UPQ0 AL161621.1-201ENST00000444796 340 ntTSL 3 BASIC4.85□□□□□ -1.63
LIMCH1Q9UPQ0 LINC01825-201ENST00000452381 850 ntTSL 3 BASIC4.85□□□□□ -1.63
LIMCH1Q9UPQ0 BX322784.1-201ENST00000455793 1077 ntBASIC4.85□□□□□ -1.63
LIMCH1Q9UPQ0 snoU13.1-201ENST00000459157 104 ntBASIC4.85□□□□□ -1.63
LIMCH1Q9UPQ0 PLGLA-201ENST00000465668 449 ntBASIC4.85□□□□□ -1.63
LIMCH1Q9UPQ0 PTP4A2-203ENST00000470404 575 ntTSL 3 BASIC4.85□□□□□ -1.63
LIMCH1Q9UPQ0 AC087312.1-201ENST00000471411 480 ntBASIC4.85□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 120.2 ms