Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 ANKRD62P1-201ENST00000434304 1623 ntBASIC4.03□□□□□ -1.77
VPS28Q9UK41 NLGN1-201ENST00000361589 5092 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
VPS28Q9UK41 FAP-214ENST00000627638 2569 ntAPPRIS ALT1 TSL 5 BASIC4.02□□□□□ -1.77
VPS28Q9UK41 OR2L3-201ENST00000359959 2792 ntAPPRIS P1 BASIC4.02□□□□□ -1.77
VPS28Q9UK41 MT-ND2-201ENST00000361453 1042 ntAPPRIS P1 BASIC4.02□□□□□ -1.77
VPS28Q9UK41 RNU6-1074P-201ENST00000383995 104 ntBASIC4.02□□□□□ -1.77
VPS28Q9UK41 RNU6-213P-201ENST00000384051 104 ntBASIC4.02□□□□□ -1.77
VPS28Q9UK41 AC092941.1-201ENST00000415940 427 ntTSL 5 BASIC4.02□□□□□ -1.77
VPS28Q9UK41 RPL22P18-201ENST00000417197 377 ntBASIC4.02□□□□□ -1.77
VPS28Q9UK41 AL137014.1-201ENST00000420490 1226 ntBASIC4.02□□□□□ -1.77
VPS28Q9UK41 RPL7P30-201ENST00000420888 709 ntBASIC4.02□□□□□ -1.77
VPS28Q9UK41 LINC00382-201ENST00000427918 890 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
VPS28Q9UK41 AC087650.1-201ENST00000431445 468 ntBASIC4.02□□□□□ -1.77
VPS28Q9UK41 AL451129.1-201ENST00000437471 285 ntTSL 3 BASIC4.02□□□□□ -1.77
VPS28Q9UK41 HMGB1P12-201ENST00000438594 598 ntBASIC4.02□□□□□ -1.77
VPS28Q9UK41 SDCBPP1-201ENST00000440192 890 ntBASIC4.02□□□□□ -1.77
VPS28Q9UK41 RANP8-201ENST00000444720 713 ntBASIC4.02□□□□□ -1.77
VPS28Q9UK41 AL357140.2-201ENST00000445884 440 ntTSL 3 BASIC4.02□□□□□ -1.77
VPS28Q9UK41 AC135371.1-201ENST00000446964 453 ntTSL 2 BASIC4.02□□□□□ -1.77
VPS28Q9UK41 AC099794.1-201ENST00000450811 447 ntTSL 3 BASIC4.02□□□□□ -1.77
VPS28Q9UK41 AC007557.1-201ENST00000451711 541 ntTSL 2 BASIC4.02□□□□□ -1.77
VPS28Q9UK41 HMGB1P15-201ENST00000453854 435 ntBASIC4.02□□□□□ -1.77
VPS28Q9UK41 USP9YP10-201ENST00000454868 628 ntBASIC4.02□□□□□ -1.77
VPS28Q9UK41 PDCD10-206ENST00000470131 1026 ntAPPRIS P1 TSL 5 BASIC4.02□□□□□ -1.77
VPS28Q9UK41 APOA2-210ENST00000491350 263 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
VPS28Q9UK41 AL139099.1-201ENST00000497398 403 ntBASIC4.02□□□□□ -1.77
VPS28Q9UK41 AC096751.1-202ENST00000502691 1067 ntBASIC4.02□□□□□ -1.77
VPS28Q9UK41 AC093297.2-207ENST00000505401 692 ntTSL 3 BASIC4.02□□□□□ -1.77
VPS28Q9UK41 AC097521.1-201ENST00000505488 567 ntTSL 3 BASIC4.02□□□□□ -1.77
VPS28Q9UK41 AC104090.1-201ENST00000506341 1171 ntBASIC4.02□□□□□ -1.77
VPS28Q9UK41 LINC02469-201ENST00000506460 741 ntTSL 3 BASIC4.02□□□□□ -1.77
VPS28Q9UK41 AC034244.1-201ENST00000507687 207 ntBASIC4.02□□□□□ -1.77
VPS28Q9UK41 USP9YP5-201ENST00000511770 630 ntBASIC4.02□□□□□ -1.77
VPS28Q9UK41 GYPA-208ENST00000512064 441 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
VPS28Q9UK41 RNU5A-4P-201ENST00000516588 111 ntBASIC4.02□□□□□ -1.77
VPS28Q9UK41 RN7SKP289-201ENST00000517244 295 ntBASIC4.02□□□□□ -1.77
VPS28Q9UK41 ELOC-204ENST00000519487 814 ntAPPRIS P1 TSL 2 BASIC4.02□□□□□ -1.77
VPS28Q9UK41 IFNG-AS1-201ENST00000536914 494 ntTSL 5 BASIC4.02□□□□□ -1.77
VPS28Q9UK41 YPEL5P3-201ENST00000547227 352 ntBASIC4.02□□□□□ -1.77
VPS28Q9UK41 AL356022.1-201ENST00000557465 483 ntTSL 5 BASIC4.02□□□□□ -1.77
VPS28Q9UK41 MIR5685-201ENST00000579080 79 ntBASIC4.02□□□□□ -1.77
VPS28Q9UK41 SLC14A2-AS1-203ENST00000592286 528 ntTSL 4 BASIC4.02□□□□□ -1.77
VPS28Q9UK41 AL357080.1-201ENST00000617394 239 ntBASIC4.02□□□□□ -1.77
VPS28Q9UK41 PACRG-211ENST00000621363 360 ntTSL 5 BASIC4.02□□□□□ -1.77
VPS28Q9UK41 AL360181.4-201ENST00000621752 134 ntBASIC4.02□□□□□ -1.77
VPS28Q9UK41 AL161637.1-201ENST00000622380 412 ntBASIC4.02□□□□□ -1.77
VPS28Q9UK41 AL354798.1-201ENST00000622505 329 ntBASIC4.02□□□□□ -1.77
VPS28Q9UK41 CRYM-AS1-204ENST00000637983 556 ntBASIC4.02□□□□□ -1.77
VPS28Q9UK41 ADGRL2-207ENST00000370723 5254 ntTSL 5 BASIC4.02□□□□□ -1.77
VPS28Q9UK41 BCLAF1-213ENST00000530767 4186 ntAPPRIS ALT2 TSL 1 (best) BASIC4.01□□□□□ -1.77
VPS28Q9UK41 C18orf54-202ENST00000382911 4056 ntTSL 5 BASIC4.01□□□□□ -1.77
VPS28Q9UK41 OR8D1-201ENST00000357821 1026 ntAPPRIS P1 BASIC4.01□□□□□ -1.77
VPS28Q9UK41 RNU6-28P-201ENST00000362378 107 ntBASIC4.01□□□□□ -1.77
VPS28Q9UK41 AC087276.2-201ENST00000394183 183 ntTSL 5 BASIC4.01□□□□□ -1.77
VPS28Q9UK41 ATP5F1P4-201ENST00000397288 746 ntBASIC4.01□□□□□ -1.77
VPS28Q9UK41 MIR1183-201ENST00000408856 89 ntBASIC4.01□□□□□ -1.77
VPS28Q9UK41 AMD1P2-201ENST00000412936 992 ntBASIC4.01□□□□□ -1.77
VPS28Q9UK41 GRM7-AS3-202ENST00000417482 454 ntTSL 3 BASIC4.01□□□□□ -1.77
VPS28Q9UK41 AC004946.1-201ENST00000421825 751 ntTSL 3 BASIC4.01□□□□□ -1.77
VPS28Q9UK41 EBLN1-201ENST00000422359 1208 ntAPPRIS P1 BASIC4.01□□□□□ -1.77
VPS28Q9UK41 HMGB1P37-201ENST00000439613 609 ntBASIC4.01□□□□□ -1.77
VPS28Q9UK41 GSAP-208ENST00000441833 737 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
VPS28Q9UK41 AL161725.2-201ENST00000442442 403 ntTSL 3 BASIC4.01□□□□□ -1.77
VPS28Q9UK41 AL359073.1-201ENST00000448036 403 ntBASIC4.01□□□□□ -1.77
VPS28Q9UK41 AL513422.1-201ENST00000449531 383 ntTSL 2 BASIC4.01□□□□□ -1.77
VPS28Q9UK41 AC005871.1-201ENST00000450247 475 ntTSL 3 BASIC4.01□□□□□ -1.77
VPS28Q9UK41 HMGN2P7-201ENST00000456186 273 ntBASIC4.01□□□□□ -1.77
VPS28Q9UK41 RN7SL323P-201ENST00000494712 295 ntBASIC4.01□□□□□ -1.77
VPS28Q9UK41 AC021146.1-201ENST00000511202 716 ntBASIC4.01□□□□□ -1.77
VPS28Q9UK41 AC010451.3-201ENST00000511721 444 ntTSL 3 BASIC4.01□□□□□ -1.77
VPS28Q9UK41 AC010342.1-201ENST00000514047 877 ntBASIC4.01□□□□□ -1.77
VPS28Q9UK41 RNU6-150P-201ENST00000516237 95 ntBASIC4.01□□□□□ -1.77
VPS28Q9UK41 NDUFA5P2-201ENST00000519723 344 ntBASIC4.01□□□□□ -1.77
VPS28Q9UK41 AC136475.4-201ENST00000534271 280 ntTSL 5 BASIC4.01□□□□□ -1.77
VPS28Q9UK41 AC005225.1-201ENST00000553394 937 ntTSL 3 BASIC4.01□□□□□ -1.77
VPS28Q9UK41 HSPE1P5-201ENST00000561489 272 ntBASIC4.01□□□□□ -1.77
VPS28Q9UK41 CHEK2P2-203ENST00000566448 670 ntTSL 5 BASIC4.01□□□□□ -1.77
VPS28Q9UK41 AC087463.3-201ENST00000570105 415 ntTSL 3 BASIC4.01□□□□□ -1.77
VPS28Q9UK41 AC025682.1-201ENST00000582389 437 ntTSL 5 BASIC4.01□□□□□ -1.77
VPS28Q9UK41 AP005271.1-201ENST00000582470 412 ntTSL 3 BASIC4.01□□□□□ -1.77
VPS28Q9UK41 TTN-AS1-213ENST00000584485 838 ntTSL 3 BASIC4.01□□□□□ -1.77
VPS28Q9UK41 AL365503.1-201ENST00000605247 905 ntBASIC4.01□□□□□ -1.77
VPS28Q9UK41 AL390208.1-201ENST00000605885 644 ntBASIC4.01□□□□□ -1.77
VPS28Q9UK41 AC107952.2-201ENST00000606048 486 ntBASIC4.01□□□□□ -1.77
VPS28Q9UK41 AC090425.2-201ENST00000608818 501 ntBASIC4.01□□□□□ -1.77
VPS28Q9UK41 AL596245.1-201ENST00000618994 362 ntBASIC4.01□□□□□ -1.77
VPS28Q9UK41 AL590240.3-201ENST00000621416 943 ntBASIC4.01□□□□□ -1.77
VPS28Q9UK41 AC073530.2-201ENST00000623987 261 ntBASIC4.01□□□□□ -1.77
VPS28Q9UK41 LINC01232-201ENST00000625254 836 ntTSL 5 BASIC4.01□□□□□ -1.77
VPS28Q9UK41 MARCH6-215ENST00000640713 231 ntTSL 5 BASIC4.01□□□□□ -1.77
VPS28Q9UK41 XRN1-202ENST00000392981 5383 ntAPPRIS ALT1 TSL 1 (best) BASIC4.01□□□□□ -1.77
VPS28Q9UK41 RFX7-201ENST00000559447 10426 ntAPPRIS P5 TSL 5 BASIC4.01□□□□□ -1.77
VPS28Q9UK41 DDX43P2-201ENST00000604753 1354 ntBASIC4.01□□□□□ -1.77
VPS28Q9UK41 SCEL-202ENST00000377246 3081 ntAPPRIS ALT2 TSL 1 (best) BASIC4.01□□□□□ -1.77
VPS28Q9UK41 LINC02471-203ENST00000641941 4752 ntBASIC4.01□□□□□ -1.77
VPS28Q9UK41 KNTC1-201ENST00000333479 6975 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
VPS28Q9UK41 LRRTM4-201ENST00000409088 3616 ntTSL 1 (best) BASIC4□□□□□ -1.77
VPS28Q9UK41 DTWD1-201ENST00000251250 13776 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
VPS28Q9UK41 LRRC39-203ENST00000370138 1466 ntTSL 5 BASIC4□□□□□ -1.77
VPS28Q9UK41 GABRG2-208ENST00000638552 3710 ntTSL 5 BASIC4□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 97.6 ms