Protein–RNA interactions for Protein: Q9UBP4

DKK3, Dickkopf-related protein 3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DKK3Q9UBP4 AC008703.1-201ENST00000637629 1174 ntTSL 5 BASIC4.53□□□□□ -1.68
DKK3Q9UBP4 PCDH11X-206ENST00000373097 9146 ntAPPRIS ALT2 TSL 1 (best) BASIC4.53□□□□□ -1.68
DKK3Q9UBP4 GYPE-201ENST00000358615 1684 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
DKK3Q9UBP4 BCLAF1-207ENST00000527759 4373 ntAPPRIS ALT2 TSL 1 (best) BASIC4.53□□□□□ -1.68
DKK3Q9UBP4 PDE1A-202ENST00000358139 2015 ntAPPRIS ALT2 TSL 2 BASIC4.53□□□□□ -1.68
DKK3Q9UBP4 EMCN-201ENST00000296420 4037 ntAPPRIS P3 TSL 1 (best) BASIC4.53□□□□□ -1.68
DKK3Q9UBP4 PUS7L-207ENST00000551923 3313 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
DKK3Q9UBP4 RGS13-204ENST00000543215 1518 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
DKK3Q9UBP4 BCLAF1-202ENST00000392348 2610 ntTSL 5 BASIC4.52□□□□□ -1.69
DKK3Q9UBP4 NABP1-205ENST00000425611 1878 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
DKK3Q9UBP4 ORC4-202ENST00000392857 6530 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
DKK3Q9UBP4 ELAVL2-202ENST00000380110 3691 ntTSL 5 BASIC4.52□□□□□ -1.69
DKK3Q9UBP4 OR56A3-205ENST00000641905 4595 ntAPPRIS P1 BASIC4.52□□□□□ -1.69
DKK3Q9UBP4 OR5T2-201ENST00000313264 1248 ntAPPRIS P2 BASIC4.52□□□□□ -1.69
DKK3Q9UBP4 MT-ND4L-201ENST00000361335 297 ntAPPRIS P1 BASIC4.52□□□□□ -1.69
DKK3Q9UBP4 RN7SKP226-201ENST00000364912 300 ntBASIC4.52□□□□□ -1.69
DKK3Q9UBP4 RNU6-657P-201ENST00000383904 107 ntBASIC4.52□□□□□ -1.69
DKK3Q9UBP4 Y_RNA.598-201ENST00000410480 95 ntBASIC4.52□□□□□ -1.69
DKK3Q9UBP4 SRGAP3-AS1-201ENST00000414633 428 ntTSL 2 BASIC4.52□□□□□ -1.69
DKK3Q9UBP4 Z97055.1-201ENST00000419730 712 ntBASIC4.52□□□□□ -1.69
DKK3Q9UBP4 AC003084.1-201ENST00000427030 435 ntTSL 5 BASIC4.52□□□□□ -1.69
DKK3Q9UBP4 AC109583.1-201ENST00000432156 268 ntBASIC4.52□□□□□ -1.69
DKK3Q9UBP4 NEK4P1-201ENST00000433383 879 ntBASIC4.52□□□□□ -1.69
DKK3Q9UBP4 AL596276.1-201ENST00000434465 418 ntBASIC4.52□□□□□ -1.69
DKK3Q9UBP4 AC078845.1-202ENST00000435996 733 ntTSL 3 BASIC4.52□□□□□ -1.69
DKK3Q9UBP4 AC122718.1-201ENST00000439448 744 ntBASIC4.52□□□□□ -1.69
DKK3Q9UBP4 RPL7P36-201ENST00000444633 681 ntBASIC4.52□□□□□ -1.69
DKK3Q9UBP4 AL078581.2-201ENST00000446392 378 ntTSL 3 BASIC4.52□□□□□ -1.69
DKK3Q9UBP4 AC013269.3-201ENST00000450486 444 ntTSL 3 BASIC4.52□□□□□ -1.69
DKK3Q9UBP4 AC012671.1-201ENST00000451912 203 ntBASIC4.52□□□□□ -1.69
DKK3Q9UBP4 FABP3P2-201ENST00000453169 399 ntBASIC4.52□□□□□ -1.69
DKK3Q9UBP4 MEMO1P3-201ENST00000459811 302 ntBASIC4.52□□□□□ -1.69
DKK3Q9UBP4 FAM133DP-201ENST00000464802 691 ntBASIC4.52□□□□□ -1.69
DKK3Q9UBP4 IGKV2-30-201ENST00000468494 390 ntAPPRIS P1 BASIC4.52□□□□□ -1.69
DKK3Q9UBP4 AC093689.1-203ENST00000505967 299 ntTSL 3 BASIC4.52□□□□□ -1.69
DKK3Q9UBP4 MFAP3L-206ENST00000506110 548 ntTSL 3 BASIC4.52□□□□□ -1.69
DKK3Q9UBP4 AC091133.4-201ENST00000511142 308 ntBASIC4.52□□□□□ -1.69
DKK3Q9UBP4 CSN1S2AP-204ENST00000512167 671 ntTSL 3 BASIC4.52□□□□□ -1.69
DKK3Q9UBP4 AC026412.2-201ENST00000512270 1075 ntBASIC4.52□□□□□ -1.69
DKK3Q9UBP4 RNU6-150P-201ENST00000516237 95 ntBASIC4.52□□□□□ -1.69
DKK3Q9UBP4 IGLVVI-25-1-201ENST00000521893 249 ntBASIC4.52□□□□□ -1.69
DKK3Q9UBP4 MIR100HG-221ENST00000534297 572 ntTSL 4 BASIC4.52□□□□□ -1.69
DKK3Q9UBP4 AC018410.2-201ENST00000540410 610 ntTSL 5 BASIC4.52□□□□□ -1.69
DKK3Q9UBP4 AC073651.3-201ENST00000545999 417 ntTSL 3 BASIC4.52□□□□□ -1.69
DKK3Q9UBP4 TMEM106C-220ENST00000552561 810 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
DKK3Q9UBP4 AC068643.2-202ENST00000552759 622 ntTSL 3 BASIC4.52□□□□□ -1.69
DKK3Q9UBP4 RPL21P7-201ENST00000557463 483 ntBASIC4.52□□□□□ -1.69
DKK3Q9UBP4 OR7A5-202ENST00000594432 1029 ntAPPRIS P1 BASIC4.52□□□□□ -1.69
DKK3Q9UBP4 IMMP1LP1-201ENST00000605170 488 ntBASIC4.52□□□□□ -1.69
DKK3Q9UBP4 AC090948.1-201ENST00000607464 549 ntBASIC4.52□□□□□ -1.69
DKK3Q9UBP4 AC131902.3-201ENST00000611767 581 ntBASIC4.52□□□□□ -1.69
DKK3Q9UBP4 AC091304.9-201ENST00000612091 226 ntBASIC4.52□□□□□ -1.69
DKK3Q9UBP4 CYLD-212ENST00000568704 3292 ntTSL 5 BASIC4.52□□□□□ -1.69
DKK3Q9UBP4 SMCO3-201ENST00000316048 2104 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
DKK3Q9UBP4 DMD-229ENST00000619831 13734 ntAPPRIS ALT2 TSL 5 BASIC4.52□□□□□ -1.69
DKK3Q9UBP4 DMD-230ENST00000620040 13746 ntAPPRIS ALT2 TSL 5 BASIC4.52□□□□□ -1.69
DKK3Q9UBP4 DTNA-203ENST00000315456 1706 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
DKK3Q9UBP4 CHD9-221ENST00000615216 10603 ntTSL 5 BASIC4.52□□□□□ -1.69
DKK3Q9UBP4 CDH10-201ENST00000264463 3438 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
DKK3Q9UBP4 ORC4-216ENST00000540442 6472 ntTSL 2 BASIC4.52□□□□□ -1.69
DKK3Q9UBP4 NLGN1-201ENST00000361589 5092 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
DKK3Q9UBP4 KCNIP4-207ENST00000509207 1301 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
DKK3Q9UBP4 DNAH12-202ENST00000351747 9542 ntTSL 5 BASIC4.51□□□□□ -1.69
DKK3Q9UBP4 MPHOSPH9-211ENST00000541076 6136 ntAPPRIS ALT2 TSL 5 BASIC4.51□□□□□ -1.69
DKK3Q9UBP4 TMEM251-201ENST00000283534 909 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
DKK3Q9UBP4 RNU6-867P-201ENST00000364956 107 ntBASIC4.51□□□□□ -1.69
DKK3Q9UBP4 C1orf189-201ENST00000368525 387 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
DKK3Q9UBP4 AL359837.1-201ENST00000381357 287 ntBASIC4.51□□□□□ -1.69
DKK3Q9UBP4 U3.22-201ENST00000391120 215 ntBASIC4.51□□□□□ -1.69
DKK3Q9UBP4 FGF12-AS1-201ENST00000414920 580 ntTSL 4 BASIC4.51□□□□□ -1.69
DKK3Q9UBP4 HMGB3P23-201ENST00000414981 585 ntBASIC4.51□□□□□ -1.69
DKK3Q9UBP4 TMSB10P2-201ENST00000416049 131 ntBASIC4.51□□□□□ -1.69
DKK3Q9UBP4 AL391219.1-201ENST00000422570 483 ntBASIC4.51□□□□□ -1.69
DKK3Q9UBP4 PDSS1P1-201ENST00000422953 1114 ntBASIC4.51□□□□□ -1.69
DKK3Q9UBP4 GLRXP1-201ENST00000423261 334 ntBASIC4.51□□□□□ -1.69
DKK3Q9UBP4 AL356583.2-201ENST00000426536 280 ntBASIC4.51□□□□□ -1.69
DKK3Q9UBP4 LINC00382-201ENST00000427918 890 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
DKK3Q9UBP4 UBXN7-204ENST00000428095 1173 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
DKK3Q9UBP4 RPL21P91-201ENST00000429231 479 ntBASIC4.51□□□□□ -1.69
DKK3Q9UBP4 TCF7L1-IT1-201ENST00000433581 458 ntTSL 3 BASIC4.51□□□□□ -1.69
DKK3Q9UBP4 AL136084.2-202ENST00000433997 353 ntTSL 2 BASIC4.51□□□□□ -1.69
DKK3Q9UBP4 AL162384.1-201ENST00000437881 499 ntTSL 2 BASIC4.51□□□□□ -1.69
DKK3Q9UBP4 SNRPEP7-201ENST00000438350 220 ntBASIC4.51□□□□□ -1.69
DKK3Q9UBP4 AL022238.1-201ENST00000442557 355 ntBASIC4.51□□□□□ -1.69
DKK3Q9UBP4 AC025428.1-201ENST00000444137 403 ntTSL 3 BASIC4.51□□□□□ -1.69
DKK3Q9UBP4 AC007099.2-201ENST00000444852 336 ntTSL 5 BASIC4.51□□□□□ -1.69
DKK3Q9UBP4 USP9YP12-201ENST00000450481 570 ntBASIC4.51□□□□□ -1.69
DKK3Q9UBP4 RPL21P126-201ENST00000470049 478 ntBASIC4.51□□□□□ -1.69
DKK3Q9UBP4 ZBTB20-AS2-201ENST00000478301 372 ntTSL 2 BASIC4.51□□□□□ -1.69
DKK3Q9UBP4 SSBP1-211ENST00000484178 676 ntAPPRIS P1 TSL 3 BASIC4.51□□□□□ -1.69
DKK3Q9UBP4 AC073359.1-201ENST00000486545 521 ntTSL 2 BASIC4.51□□□□□ -1.69
DKK3Q9UBP4 RN7SL810P-201ENST00000493031 276 ntBASIC4.51□□□□□ -1.69
DKK3Q9UBP4 AC068305.1-201ENST00000497406 726 ntBASIC4.51□□□□□ -1.69
DKK3Q9UBP4 AC116353.2-201ENST00000505332 712 ntBASIC4.51□□□□□ -1.69
DKK3Q9UBP4 AC105914.2-201ENST00000507525 233 ntTSL 3 BASIC4.51□□□□□ -1.69
DKK3Q9UBP4 EPGN-208ENST00000509145 222 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
DKK3Q9UBP4 PAIP2-205ENST00000510080 858 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
DKK3Q9UBP4 AC097103.1-201ENST00000512398 273 ntTSL 3 BASIC4.51□□□□□ -1.69
DKK3Q9UBP4 AC022483.1-201ENST00000514020 567 ntBASIC4.51□□□□□ -1.69
DKK3Q9UBP4 RNA5SP446-201ENST00000515955 82 ntBASIC4.51□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 82.8 ms