Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 VWA8P1-201ENST00000510889 176 ntBASIC4.33□□□□□ -1.72
VSX1Q9NZR4 AC004980.4-201ENST00000513375 203 ntBASIC4.33□□□□□ -1.72
VSX1Q9NZR4 AC097467.1-201ENST00000513660 370 ntTSL 5 BASIC4.33□□□□□ -1.72
VSX1Q9NZR4 AC114781.4-201ENST00000513707 639 ntBASIC4.33□□□□□ -1.72
VSX1Q9NZR4 RNU6-1281P-201ENST00000516223 105 ntBASIC4.33□□□□□ -1.72
VSX1Q9NZR4 RNA5SP392-201ENST00000516905 112 ntBASIC4.33□□□□□ -1.72
VSX1Q9NZR4 RNU6-709P-201ENST00000517257 104 ntBASIC4.33□□□□□ -1.72
VSX1Q9NZR4 AC018437.2-201ENST00000517369 389 ntTSL 5 BASIC4.33□□□□□ -1.72
VSX1Q9NZR4 C11orf1-204ENST00000530214 599 ntTSL 5 BASIC4.33□□□□□ -1.72
VSX1Q9NZR4 FBXO3-210ENST00000532057 918 ntTSL 2 BASIC4.33□□□□□ -1.72
VSX1Q9NZR4 FBXO3-AS1-202ENST00000533046 386 ntTSL 3 BASIC4.33□□□□□ -1.72
VSX1Q9NZR4 LINC01495-202ENST00000534135 343 ntTSL 2 BASIC4.33□□□□□ -1.72
VSX1Q9NZR4 AC123904.2-201ENST00000548059 300 ntBASIC4.33□□□□□ -1.72
VSX1Q9NZR4 MIR3691-201ENST00000578066 90 ntBASIC4.33□□□□□ -1.72
VSX1Q9NZR4 MIR3118-1-201ENST00000581787 76 ntBASIC4.33□□□□□ -1.72
VSX1Q9NZR4 AC060780.3-201ENST00000589464 80 ntBASIC4.33□□□□□ -1.72
VSX1Q9NZR4 AC006116.3-201ENST00000592968 361 ntBASIC4.33□□□□□ -1.72
VSX1Q9NZR4 AC004542.2-201ENST00000602847 546 ntTSL 3 BASIC4.33□□□□□ -1.72
VSX1Q9NZR4 AC008782.1-201ENST00000603386 430 ntBASIC4.33□□□□□ -1.72
VSX1Q9NZR4 RNF138P2-201ENST00000603490 592 ntBASIC4.33□□□□□ -1.72
VSX1Q9NZR4 AL391646.1-201ENST00000603860 190 ntBASIC4.33□□□□□ -1.72
VSX1Q9NZR4 SUMO2P15-201ENST00000604285 278 ntBASIC4.33□□□□□ -1.72
VSX1Q9NZR4 GPR171-203ENST00000617554 960 ntAPPRIS P1 BASIC4.33□□□□□ -1.72
VSX1Q9NZR4 AL138828.1-201ENST00000626414 291 ntTSL 5 BASIC4.33□□□□□ -1.72
VSX1Q9NZR4 ABCA9-AS1-203ENST00000627596 426 ntTSL 5 BASIC4.33□□□□□ -1.72
VSX1Q9NZR4 STAG2-204ENST00000371157 5991 ntAPPRIS P3 TSL 1 (best) BASIC4.33□□□□□ -1.72
VSX1Q9NZR4 BCLAF1P2-201ENST00000624956 2609 ntBASIC4.33□□□□□ -1.72
VSX1Q9NZR4 PLCB4-203ENST00000378493 5796 ntAPPRIS ALT1 TSL 2 BASIC4.33□□□□□ -1.72
VSX1Q9NZR4 TRIM69-201ENST00000329464 1901 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
VSX1Q9NZR4 C4BPAP1-201ENST00000415474 1893 ntBASIC4.32□□□□□ -1.72
VSX1Q9NZR4 C4orf17-204ENST00000514652 2542 ntAPPRIS ALT2 TSL 5 BASIC4.32□□□□□ -1.72
VSX1Q9NZR4 SON-204ENST00000381692 2463 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
VSX1Q9NZR4 CACNB4-233ENST00000636773 4143 ntTSL 5 BASIC4.32□□□□□ -1.72
VSX1Q9NZR4 PSMD1-213ENST00000619128 3161 ntAPPRIS ALT1 TSL 5 BASIC4.32□□□□□ -1.72
VSX1Q9NZR4 EDDM3A-201ENST00000326842 927 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
VSX1Q9NZR4 MDM2-207ENST00000360430 891 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
VSX1Q9NZR4 RNU6-108P-201ENST00000365558 107 ntBASIC4.32□□□□□ -1.72
VSX1Q9NZR4 RNU1-39P-201ENST00000383897 165 ntBASIC4.32□□□□□ -1.72
VSX1Q9NZR4 SNORA20.2-201ENST00000383922 131 ntBASIC4.32□□□□□ -1.72
VSX1Q9NZR4 RNU6-483P-201ENST00000384088 108 ntBASIC4.32□□□□□ -1.72
VSX1Q9NZR4 SNORA70-201ENST00000384436 135 ntBASIC4.32□□□□□ -1.72
VSX1Q9NZR4 RNU6-876P-201ENST00000391295 104 ntBASIC4.32□□□□□ -1.72
VSX1Q9NZR4 AL049697.2-201ENST00000403708 294 ntBASIC4.32□□□□□ -1.72
VSX1Q9NZR4 AL592291.1-201ENST00000403830 352 ntBASIC4.32□□□□□ -1.72
VSX1Q9NZR4 DPPA2P3-201ENST00000411853 655 ntBASIC4.32□□□□□ -1.72
VSX1Q9NZR4 AC009237.5-201ENST00000414271 501 ntBASIC4.32□□□□□ -1.72
VSX1Q9NZR4 GJA6P-201ENST00000415117 1042 ntBASIC4.32□□□□□ -1.72
VSX1Q9NZR4 MTATP6P18-201ENST00000417994 673 ntBASIC4.32□□□□□ -1.72
VSX1Q9NZR4 E2F6P2-201ENST00000420708 748 ntBASIC4.32□□□□□ -1.72
VSX1Q9NZR4 RPL30P3-201ENST00000424262 333 ntBASIC4.32□□□□□ -1.72
VSX1Q9NZR4 AC008065.1-201ENST00000428525 348 ntBASIC4.32□□□□□ -1.72
VSX1Q9NZR4 AC093019.2-201ENST00000432294 384 ntTSL 3 BASIC4.32□□□□□ -1.72
VSX1Q9NZR4 AC009226.1-201ENST00000432413 539 ntTSL 3 BASIC4.32□□□□□ -1.72
VSX1Q9NZR4 AL451139.1-201ENST00000434718 346 ntBASIC4.32□□□□□ -1.72
VSX1Q9NZR4 AC004938.1-201ENST00000438468 308 ntBASIC4.32□□□□□ -1.72
VSX1Q9NZR4 AC005532.2-201ENST00000467154 373 ntBASIC4.32□□□□□ -1.72
VSX1Q9NZR4 GSTM1-206ENST00000483399 512 ntTSL 3 BASIC4.32□□□□□ -1.72
VSX1Q9NZR4 LINC02379-201ENST00000505741 300 ntTSL 3 BASIC4.32□□□□□ -1.72
VSX1Q9NZR4 MRPS33P2-201ENST00000507850 322 ntBASIC4.32□□□□□ -1.72
VSX1Q9NZR4 AF235103.2-201ENST00000525753 346 ntBASIC4.32□□□□□ -1.72
VSX1Q9NZR4 AP003400.1-201ENST00000528319 231 ntTSL 5 BASIC4.32□□□□□ -1.72
VSX1Q9NZR4 AP003718.1-201ENST00000529884 583 ntTSL 4 BASIC4.32□□□□□ -1.72
VSX1Q9NZR4 AC104383.1-201ENST00000530297 370 ntBASIC4.32□□□□□ -1.72
VSX1Q9NZR4 AP000907.2-201ENST00000530827 353 ntBASIC4.32□□□□□ -1.72
VSX1Q9NZR4 CBX3P7-201ENST00000532876 502 ntBASIC4.32□□□□□ -1.72
VSX1Q9NZR4 AC009509.1-201ENST00000536317 1110 ntTSL 5 BASIC4.32□□□□□ -1.72
VSX1Q9NZR4 LINC02464-201ENST00000552060 368 ntTSL 2 BASIC4.32□□□□□ -1.72
VSX1Q9NZR4 SUB1P2-201ENST00000556401 297 ntBASIC4.32□□□□□ -1.72
VSX1Q9NZR4 AC090844.2-203ENST00000582263 632 ntTSL 5 BASIC4.32□□□□□ -1.72
VSX1Q9NZR4 FGF7P1-201ENST00000582820 288 ntBASIC4.32□□□□□ -1.72
VSX1Q9NZR4 AC118757.1-201ENST00000586982 453 ntTSL 2 BASIC4.32□□□□□ -1.72
VSX1Q9NZR4 MIR7515HG-226ENST00000588330 1055 ntTSL 5 BASIC4.32□□□□□ -1.72
VSX1Q9NZR4 AC010928.1-202ENST00000589354 473 ntTSL 3 BASIC4.32□□□□□ -1.72
VSX1Q9NZR4 AL009028.1-201ENST00000604895 802 ntBASIC4.32□□□□□ -1.72
VSX1Q9NZR4 AL008635.1-201ENST00000609073 385 ntTSL 3 BASIC4.32□□□□□ -1.72
VSX1Q9NZR4 MIR6826-201ENST00000617808 98 ntBASIC4.32□□□□□ -1.72
VSX1Q9NZR4 AL022401.1-201ENST00000619498 108 ntBASIC4.32□□□□□ -1.72
VSX1Q9NZR4 AC091953.2-201ENST00000623979 160 ntBASIC4.32□□□□□ -1.72
VSX1Q9NZR4 AC009033.1-201ENST00000624279 431 ntBASIC4.32□□□□□ -1.72
VSX1Q9NZR4 CR381572.2-201ENST00000624852 397 ntBASIC4.32□□□□□ -1.72
VSX1Q9NZR4 FER-210ENST00000628534 558 ntTSL 5 BASIC4.32□□□□□ -1.72
VSX1Q9NZR4 AL355480.1-201ENST00000629041 99 ntBASIC4.32□□□□□ -1.72
VSX1Q9NZR4 COA1-220ENST00000640232 192 ntAPPRIS ALT2 TSL 3 BASIC4.32□□□□□ -1.72
VSX1Q9NZR4 CARF-208ENST00000428585 2513 ntTSL 2 BASIC4.32□□□□□ -1.72
VSX1Q9NZR4 SERPINI2-209ENST00000616363 1769 ntTSL 5 BASIC4.32□□□□□ -1.72
VSX1Q9NZR4 SLC44A5-202ENST00000370859 3896 ntAPPRIS ALT2 TSL 2 BASIC4.32□□□□□ -1.72
VSX1Q9NZR4 SERPINI2-201ENST00000264677 1678 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
VSX1Q9NZR4 C8orf34-202ENST00000337103 3652 ntAPPRIS ALT2 TSL 1 (best) BASIC4.32□□□□□ -1.72
VSX1Q9NZR4 LINC00550-201ENST00000629293 3434 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
VSX1Q9NZR4 ORC4-216ENST00000540442 6472 ntTSL 2 BASIC4.31□□□□□ -1.72
VSX1Q9NZR4 ZNF726-205ENST00000575986 1522 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
VSX1Q9NZR4 LINC00158-201ENST00000332587 1476 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
VSX1Q9NZR4 MPDZ-211ENST00000536827 6176 ntAPPRIS ALT2 TSL 1 (best) BASIC4.31□□□□□ -1.72
VSX1Q9NZR4 ROBO2-213ENST00000614793 7662 ntTSL 5 BASIC4.31□□□□□ -1.72
VSX1Q9NZR4 MTND4P12-201ENST00000498999 1377 ntBASIC4.31□□□□□ -1.72
VSX1Q9NZR4 PARP15-206ENST00000493645 1311 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
VSX1Q9NZR4 ADNP-201ENST00000349014 5963 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
VSX1Q9NZR4 OR5AN1-201ENST00000313940 1037 ntAPPRIS P1 BASIC4.31□□□□□ -1.72
VSX1Q9NZR4 RNVU1-3-201ENST00000364313 161 ntBASIC4.31□□□□□ -1.72
VSX1Q9NZR4 RNU1-106P-201ENST00000384382 164 ntBASIC4.31□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 123.5 ms