Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 OR5H5P-201ENST00000503164 928 ntBASIC4.64□□□□□ -1.67
TDP1Q9NUW8 AP002075.1-201ENST00000505091 603 ntTSL 3 BASIC4.64□□□□□ -1.67
TDP1Q9NUW8 LINC02379-201ENST00000505741 300 ntTSL 3 BASIC4.64□□□□□ -1.67
TDP1Q9NUW8 MTCO3P44-201ENST00000510977 541 ntBASIC4.64□□□□□ -1.67
TDP1Q9NUW8 EGFLAM-AS2-201ENST00000512603 466 ntTSL 5 BASIC4.64□□□□□ -1.67
TDP1Q9NUW8 AC005798.1-201ENST00000513715 387 ntBASIC4.64□□□□□ -1.67
TDP1Q9NUW8 RNU6-718P-201ENST00000516166 105 ntBASIC4.64□□□□□ -1.67
TDP1Q9NUW8 Y_RNA.672-201ENST00000516289 104 ntBASIC4.64□□□□□ -1.67
TDP1Q9NUW8 SNORA31.9-201ENST00000516429 84 ntBASIC4.64□□□□□ -1.67
TDP1Q9NUW8 RNU6-1178P-201ENST00000516674 107 ntBASIC4.64□□□□□ -1.67
TDP1Q9NUW8 AC022616.6-201ENST00000520479 119 ntBASIC4.64□□□□□ -1.67
TDP1Q9NUW8 AC090124.2-201ENST00000527727 563 ntTSL 4 BASIC4.64□□□□□ -1.67
TDP1Q9NUW8 AL160191.1-202ENST00000554008 576 ntTSL 4 BASIC4.64□□□□□ -1.67
TDP1Q9NUW8 BNIP3P5-201ENST00000562290 498 ntBASIC4.64□□□□□ -1.67
TDP1Q9NUW8 AC007224.1-201ENST00000564410 144 ntBASIC4.64□□□□□ -1.67
TDP1Q9NUW8 AC234778.2-201ENST00000566241 354 ntBASIC4.64□□□□□ -1.67
TDP1Q9NUW8 AC007495.1-203ENST00000569025 888 ntTSL 5 BASIC4.64□□□□□ -1.67
TDP1Q9NUW8 AC090615.1-201ENST00000577519 154 ntBASIC4.64□□□□□ -1.67
TDP1Q9NUW8 MIR3160-1-201ENST00000577972 85 ntBASIC4.64□□□□□ -1.67
TDP1Q9NUW8 PSMD5-AS1-203ENST00000589026 525 ntTSL 5 BASIC4.64□□□□□ -1.67
TDP1Q9NUW8 AC135012.2-201ENST00000600234 479 ntTSL 2 BASIC4.64□□□□□ -1.67
TDP1Q9NUW8 AL606834.2-201ENST00000602954 668 ntBASIC4.64□□□□□ -1.67
TDP1Q9NUW8 BPIFA4P-203ENST00000603168 689 ntBASIC4.64□□□□□ -1.67
TDP1Q9NUW8 AP000860.1-201ENST00000605250 559 ntBASIC4.64□□□□□ -1.67
TDP1Q9NUW8 OR10AB1P-201ENST00000609613 938 ntBASIC4.64□□□□□ -1.67
TDP1Q9NUW8 Metazoa_SRP.117-201ENST00000615106 292 ntBASIC4.64□□□□□ -1.67
TDP1Q9NUW8 AC124864.2-201ENST00000624736 186 ntBASIC4.64□□□□□ -1.67
TDP1Q9NUW8 FTO-223ENST00000640179 210 ntTSL 5 BASIC4.64□□□□□ -1.67
TDP1Q9NUW8 AL596275.2-204ENST00000641628 552 ntBASIC4.64□□□□□ -1.67
TDP1Q9NUW8 AL596275.2-206ENST00000641957 626 ntBASIC4.64□□□□□ -1.67
TDP1Q9NUW8 DHX9P1-201ENST00000436565 3076 ntBASIC4.64□□□□□ -1.67
TDP1Q9NUW8 GHR-208ENST00000612382 4699 ntAPPRIS P1 TSL 5 BASIC4.64□□□□□ -1.67
TDP1Q9NUW8 CUL2-201ENST00000374746 3903 ntTSL 5 BASIC4.64□□□□□ -1.67
TDP1Q9NUW8 SPEF2-216ENST00000637569 7350 ntAPPRIS ALT2 TSL 5 BASIC4.63□□□□□ -1.67
TDP1Q9NUW8 AK9-201ENST00000285397 2566 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
TDP1Q9NUW8 LINC02475-202ENST00000512678 2622 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
TDP1Q9NUW8 RDH10-AS1-201ENST00000514599 3261 ntTSL 2 BASIC4.63□□□□□ -1.67
TDP1Q9NUW8 AFTPH-205ENST00000422803 1525 ntTSL 5 BASIC4.63□□□□□ -1.67
TDP1Q9NUW8 MS4A14-203ENST00000395005 2813 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
TDP1Q9NUW8 AL359893.1-201ENST00000447628 1580 ntBASIC4.63□□□□□ -1.67
TDP1Q9NUW8 LRRC3B-205ENST00000456208 1551 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
TDP1Q9NUW8 TAS2R3-201ENST00000247879 1101 ntAPPRIS P1 BASIC4.63□□□□□ -1.67
TDP1Q9NUW8 TSHB-201ENST00000256592 537 ntAPPRIS P1 TSL 5 BASIC4.63□□□□□ -1.67
TDP1Q9NUW8 C1orf100-201ENST00000308105 579 ntAPPRIS P1 TSL 2 BASIC4.63□□□□□ -1.67
TDP1Q9NUW8 PMCH-201ENST00000329406 766 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
TDP1Q9NUW8 RNA5SP258-201ENST00000362750 119 ntBASIC4.63□□□□□ -1.67
TDP1Q9NUW8 Y_RNA.296-201ENST00000364930 108 ntBASIC4.63□□□□□ -1.67
TDP1Q9NUW8 UBBP2-201ENST00000376781 231 ntBASIC4.63□□□□□ -1.67
TDP1Q9NUW8 RNU6-1207P-201ENST00000384343 107 ntBASIC4.63□□□□□ -1.67
TDP1Q9NUW8 MTND4LP20-201ENST00000402379 270 ntBASIC4.63□□□□□ -1.67
TDP1Q9NUW8 SNORA11-201ENST00000408789 128 ntBASIC4.63□□□□□ -1.67
TDP1Q9NUW8 AL359704.1-201ENST00000411586 781 ntBASIC4.63□□□□□ -1.67
TDP1Q9NUW8 RPL23AP26-201ENST00000412728 464 ntBASIC4.63□□□□□ -1.67
TDP1Q9NUW8 AC127526.1-201ENST00000417526 366 ntBASIC4.63□□□□□ -1.67
TDP1Q9NUW8 CYCSP10-201ENST00000417973 294 ntBASIC4.63□□□□□ -1.67
TDP1Q9NUW8 OR51AB1P-201ENST00000429046 620 ntBASIC4.63□□□□□ -1.67
TDP1Q9NUW8 AL356277.3-201ENST00000432484 618 ntTSL 3 BASIC4.63□□□□□ -1.67
TDP1Q9NUW8 AC007003.1-202ENST00000439318 349 ntTSL 5 BASIC4.63□□□□□ -1.67
TDP1Q9NUW8 MTND6P18-201ENST00000439477 513 ntBASIC4.63□□□□□ -1.67
TDP1Q9NUW8 RBMX2P4-201ENST00000441256 376 ntBASIC4.63□□□□□ -1.67
TDP1Q9NUW8 HMGB3P9-201ENST00000441799 583 ntBASIC4.63□□□□□ -1.67
TDP1Q9NUW8 AL360089.1-201ENST00000442260 436 ntTSL 5 BASIC4.63□□□□□ -1.67
TDP1Q9NUW8 AL356859.1-201ENST00000449180 414 ntTSL 5 BASIC4.63□□□□□ -1.67
TDP1Q9NUW8 AL844175.1-201ENST00000455153 323 ntTSL 5 BASIC4.63□□□□□ -1.67
TDP1Q9NUW8 snoU13.8-201ENST00000458890 104 ntBASIC4.63□□□□□ -1.67
TDP1Q9NUW8 UQCRHP4-201ENST00000471686 272 ntBASIC4.63□□□□□ -1.67
TDP1Q9NUW8 AC105137.1-201ENST00000484355 562 ntBASIC4.63□□□□□ -1.67
TDP1Q9NUW8 AC020890.1-201ENST00000491837 504 ntBASIC4.63□□□□□ -1.67
TDP1Q9NUW8 AC109464.3-201ENST00000509456 204 ntTSL 5 BASIC4.63□□□□□ -1.67
TDP1Q9NUW8 PARP4P3-201ENST00000510265 317 ntBASIC4.63□□□□□ -1.67
TDP1Q9NUW8 AC016598.2-201ENST00000514942 525 ntTSL 5 BASIC4.63□□□□□ -1.67
TDP1Q9NUW8 LINC02492-204ENST00000515660 584 ntTSL 2 BASIC4.63□□□□□ -1.67
TDP1Q9NUW8 SLIT2-IT1-201ENST00000515882 601 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
TDP1Q9NUW8 MRPL49P2-201ENST00000521066 465 ntBASIC4.63□□□□□ -1.67
TDP1Q9NUW8 AC022695.3-201ENST00000523385 478 ntTSL 3 BASIC4.63□□□□□ -1.67
TDP1Q9NUW8 OR5BC1P-201ENST00000529327 739 ntBASIC4.63□□□□□ -1.67
TDP1Q9NUW8 PTP4A1P6-201ENST00000531034 478 ntBASIC4.63□□□□□ -1.67
TDP1Q9NUW8 CYCSP29-201ENST00000533731 318 ntBASIC4.63□□□□□ -1.67
TDP1Q9NUW8 MIR100HG-221ENST00000534297 572 ntTSL 4 BASIC4.63□□□□□ -1.67
TDP1Q9NUW8 KLRC2-204ENST00000536833 771 ntTSL 5 BASIC4.63□□□□□ -1.67
TDP1Q9NUW8 MEG8-218ENST00000556720 456 ntTSL 3 BASIC4.63□□□□□ -1.67
TDP1Q9NUW8 AC015912.2-201ENST00000571053 181 ntBASIC4.63□□□□□ -1.67
TDP1Q9NUW8 AL391840.1-201ENST00000571144 367 ntBASIC4.63□□□□□ -1.67
TDP1Q9NUW8 DLGAP1-AS4-201ENST00000582054 757 ntTSL 5 BASIC4.63□□□□□ -1.67
TDP1Q9NUW8 LINC01905-206ENST00000593180 524 ntTSL 2 BASIC4.63□□□□□ -1.67
TDP1Q9NUW8 DUXAP4-201ENST00000603046 613 ntBASIC4.63□□□□□ -1.67
TDP1Q9NUW8 AL009028.1-201ENST00000604895 802 ntBASIC4.63□□□□□ -1.67
TDP1Q9NUW8 AC113403.1-201ENST00000604910 193 ntBASIC4.63□□□□□ -1.67
TDP1Q9NUW8 RNU6-87P-201ENST00000607561 108 ntBASIC4.63□□□□□ -1.67
TDP1Q9NUW8 AC090970.3-201ENST00000612566 866 ntBASIC4.63□□□□□ -1.67
TDP1Q9NUW8 ATXN3-251ENST00000617719 1074 ntTSL 5 BASIC4.63□□□□□ -1.67
TDP1Q9NUW8 uc_338.13-201ENST00000618243 179 ntBASIC4.63□□□□□ -1.67
TDP1Q9NUW8 AC009159.1-201ENST00000618386 642 ntBASIC4.63□□□□□ -1.67
TDP1Q9NUW8 AC073534.2-201ENST00000620377 381 ntBASIC4.63□□□□□ -1.67
TDP1Q9NUW8 AL023881.1-201ENST00000621088 301 ntBASIC4.63□□□□□ -1.67
TDP1Q9NUW8 PARP15-206ENST00000493645 1311 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
TDP1Q9NUW8 UGT8-202ENST00000394511 2448 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
TDP1Q9NUW8 AC092821.1-201ENST00000640129 4180 ntAPPRIS P1 TSL 5 BASIC4.63□□□□□ -1.67
TDP1Q9NUW8 EIF2AP4-201ENST00000424793 1781 ntBASIC4.63□□□□□ -1.67
TDP1Q9NUW8 AC000123.3-201ENST00000624029 4975 ntBASIC4.63□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 118.8 ms