Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 ZNF886P-201ENST00000450781 723 ntBASIC3.44□□□□□ -1.86
DDX28Q9NUL7 AL589935.1-212ENST00000450998 525 ntTSL 2 BASIC3.44□□□□□ -1.86
DDX28Q9NUL7 AL157400.4-201ENST00000455699 667 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
DDX28Q9NUL7 DCUN1D1-204ENST00000469954 970 ntTSL 3 BASIC3.44□□□□□ -1.86
DDX28Q9NUL7 AP002884.2-201ENST00000471647 395 ntBASIC3.44□□□□□ -1.86
DDX28Q9NUL7 RPS4XP22-201ENST00000480755 780 ntBASIC3.44□□□□□ -1.86
DDX28Q9NUL7 AC069444.1-201ENST00000489428 266 ntTSL 3 BASIC3.44□□□□□ -1.86
DDX28Q9NUL7 OR4G11P-201ENST00000492842 939 ntBASIC3.44□□□□□ -1.86
DDX28Q9NUL7 AC108941.1-201ENST00000502853 530 ntBASIC3.44□□□□□ -1.86
DDX28Q9NUL7 MND1-203ENST00000504860 638 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
DDX28Q9NUL7 AC114322.1-201ENST00000506771 926 ntBASIC3.44□□□□□ -1.86
DDX28Q9NUL7 TPT1P8-201ENST00000510120 555 ntBASIC3.44□□□□□ -1.86
DDX28Q9NUL7 AC024132.3-201ENST00000513616 649 ntTSL 5 BASIC3.44□□□□□ -1.86
DDX28Q9NUL7 SNORA67.7-201ENST00000516664 135 ntBASIC3.44□□□□□ -1.86
DDX28Q9NUL7 TRIQK-209ENST00000519969 555 ntAPPRIS P1 TSL 4 BASIC3.44□□□□□ -1.86
DDX28Q9NUL7 NDUFB9P3-201ENST00000521269 501 ntBASIC3.44□□□□□ -1.86
DDX28Q9NUL7 AC087341.1-201ENST00000521490 491 ntTSL 2 BASIC3.44□□□□□ -1.86
DDX28Q9NUL7 AP004371.1-201ENST00000525240 214 ntBASIC3.44□□□□□ -1.86
DDX28Q9NUL7 AP001636.2-201ENST00000525517 696 ntBASIC3.44□□□□□ -1.86
DDX28Q9NUL7 AC023442.2-201ENST00000526455 270 ntTSL 3 BASIC3.44□□□□□ -1.86
DDX28Q9NUL7 SMILR-201ENST00000533992 553 ntTSL 4 BASIC3.44□□□□□ -1.86
DDX28Q9NUL7 AC005832.3-201ENST00000537929 631 ntBASIC3.44□□□□□ -1.86
DDX28Q9NUL7 AC008011.1-201ENST00000545989 227 ntBASIC3.44□□□□□ -1.86
DDX28Q9NUL7 AC073651.3-201ENST00000545999 417 ntTSL 3 BASIC3.44□□□□□ -1.86
DDX28Q9NUL7 MRPL42-203ENST00000547098 701 ntTSL 3 BASIC3.44□□□□□ -1.86
DDX28Q9NUL7 DAZAP2-209ENST00000549732 601 ntTSL 2 BASIC3.44□□□□□ -1.86
DDX28Q9NUL7 AC090403.1-205ENST00000580883 516 ntTSL 2 BASIC3.44□□□□□ -1.86
DDX28Q9NUL7 MIR3158-1-201ENST00000583596 81 ntBASIC3.44□□□□□ -1.86
DDX28Q9NUL7 AL157938.2-203ENST00000589540 931 ntTSL 5 BASIC3.44□□□□□ -1.86
DDX28Q9NUL7 SLC14A2-AS1-203ENST00000592286 528 ntTSL 4 BASIC3.44□□□□□ -1.86
DDX28Q9NUL7 AL451086.1-201ENST00000605596 223 ntBASIC3.44□□□□□ -1.86
DDX28Q9NUL7 RNU4-5P-201ENST00000607255 135 ntBASIC3.44□□□□□ -1.86
DDX28Q9NUL7 AC090912.3-201ENST00000609775 533 ntBASIC3.44□□□□□ -1.86
DDX28Q9NUL7 MIR6867-201ENST00000610636 67 ntBASIC3.44□□□□□ -1.86
DDX28Q9NUL7 AC073052.2-202ENST00000622296 775 ntTSL 5 BASIC3.44□□□□□ -1.86
DDX28Q9NUL7 C3orf79-201ENST00000623038 580 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
DDX28Q9NUL7 AC244517.5-201ENST00000624139 722 ntTSL 3 BASIC3.44□□□□□ -1.86
DDX28Q9NUL7 OR4G3P-201ENST00000633500 913 ntBASIC3.44□□□□□ -1.86
DDX28Q9NUL7 AC011139.1-202ENST00000637744 563 ntTSL 5 BASIC3.44□□□□□ -1.86
DDX28Q9NUL7 ZNF322-205ENST00000471278 2675 ntAPPRIS P1 TSL 5 BASIC3.44□□□□□ -1.86
DDX28Q9NUL7 FMNL2-202ENST00000475377 3648 ntTSL 5 BASIC3.44□□□□□ -1.86
DDX28Q9NUL7 VNN1-201ENST00000367928 3106 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
DDX28Q9NUL7 LRRN3-203ENST00000422987 3513 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
DDX28Q9NUL7 NPVF-201ENST00000222674 1190 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
DDX28Q9NUL7 IL18R1-202ENST00000334376 537 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
DDX28Q9NUL7 NACA3P-201ENST00000359690 648 ntBASIC3.43□□□□□ -1.86
DDX28Q9NUL7 RNU6-1249P-201ENST00000363237 111 ntBASIC3.43□□□□□ -1.86
DDX28Q9NUL7 RNU6-560P-201ENST00000364007 108 ntBASIC3.43□□□□□ -1.86
DDX28Q9NUL7 SNORA51.2-201ENST00000364595 132 ntBASIC3.43□□□□□ -1.86
DDX28Q9NUL7 MIR199A2-201ENST00000385289 110 ntBASIC3.43□□□□□ -1.86
DDX28Q9NUL7 AL450338.1-201ENST00000407987 512 ntBASIC3.43□□□□□ -1.86
DDX28Q9NUL7 RNU6-584P-201ENST00000410350 95 ntBASIC3.43□□□□□ -1.86
DDX28Q9NUL7 CYCSP19-201ENST00000411715 316 ntBASIC3.43□□□□□ -1.86
DDX28Q9NUL7 AL356320.2-201ENST00000417263 507 ntBASIC3.43□□□□□ -1.86
DDX28Q9NUL7 CR769775.2-201ENST00000417850 891 ntTSL 3 BASIC3.43□□□□□ -1.86
DDX28Q9NUL7 AL513175.2-201ENST00000422071 443 ntBASIC3.43□□□□□ -1.86
DDX28Q9NUL7 AC006946.1-201ENST00000429106 328 ntBASIC3.43□□□□□ -1.86
DDX28Q9NUL7 LINC00375-201ENST00000433074 601 ntTSL 5 BASIC3.43□□□□□ -1.86
DDX28Q9NUL7 USP9YP24-201ENST00000434374 697 ntBASIC3.43□□□□□ -1.86
DDX28Q9NUL7 RRM2P4-201ENST00000441721 562 ntBASIC3.43□□□□□ -1.86
DDX28Q9NUL7 AL360089.1-201ENST00000442260 436 ntTSL 5 BASIC3.43□□□□□ -1.86
DDX28Q9NUL7 USP9YP17-201ENST00000444617 696 ntBASIC3.43□□□□□ -1.86
DDX28Q9NUL7 AF127577.1-201ENST00000446301 562 ntTSL 3 BASIC3.43□□□□□ -1.86
DDX28Q9NUL7 RNF148-202ENST00000447240 839 ntTSL 2 BASIC3.43□□□□□ -1.86
DDX28Q9NUL7 DUXAP8-207ENST00000456786 622 ntBASIC3.43□□□□□ -1.86
DDX28Q9NUL7 ARPC3P2-201ENST00000457786 533 ntBASIC3.43□□□□□ -1.86
DDX28Q9NUL7 PDCD10-206ENST00000470131 1026 ntAPPRIS P1 TSL 5 BASIC3.43□□□□□ -1.86
DDX28Q9NUL7 MDM2-217ENST00000478070 692 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
DDX28Q9NUL7 CFLAR-225ENST00000494258 693 ntTSL 3 BASIC3.43□□□□□ -1.86
DDX28Q9NUL7 AC134050.1-201ENST00000495088 933 ntBASIC3.43□□□□□ -1.86
DDX28Q9NUL7 LINC00492-201ENST00000504436 593 ntTSL 3 BASIC3.43□□□□□ -1.86
DDX28Q9NUL7 NPM1P41-201ENST00000512920 831 ntBASIC3.43□□□□□ -1.86
DDX28Q9NUL7 LINC02143-201ENST00000519929 520 ntTSL 3 BASIC3.43□□□□□ -1.86
DDX28Q9NUL7 AC027701.1-201ENST00000520155 823 ntTSL 3 BASIC3.43□□□□□ -1.86
DDX28Q9NUL7 CA1-215ENST00000522389 551 ntTSL 3 BASIC3.43□□□□□ -1.86
DDX28Q9NUL7 AC027018.1-201ENST00000533978 396 ntTSL 4 BASIC3.43□□□□□ -1.86
DDX28Q9NUL7 AP000619.3-201ENST00000535634 1127 ntBASIC3.43□□□□□ -1.86
DDX28Q9NUL7 AC006518.1-201ENST00000541449 943 ntBASIC3.43□□□□□ -1.86
DDX28Q9NUL7 AC087311.2-201ENST00000549660 320 ntTSL 4 BASIC3.43□□□□□ -1.86
DDX28Q9NUL7 HIGD1AP17-201ENST00000554576 276 ntBASIC3.43□□□□□ -1.86
DDX28Q9NUL7 FRMD6-AS2-202ENST00000557625 581 ntTSL 4 BASIC3.43□□□□□ -1.86
DDX28Q9NUL7 AL132657.2-201ENST00000564417 358 ntBASIC3.43□□□□□ -1.86
DDX28Q9NUL7 LARP7P2-201ENST00000575306 125 ntBASIC3.43□□□□□ -1.86
DDX28Q9NUL7 MIR4738-201ENST00000579134 87 ntBASIC3.43□□□□□ -1.86
DDX28Q9NUL7 LINC01909-202ENST00000584919 815 ntTSL 3 BASIC3.43□□□□□ -1.86
DDX28Q9NUL7 AC022706.1-202ENST00000585387 540 ntTSL 3 BASIC3.43□□□□□ -1.86
DDX28Q9NUL7 BNIP3P24-201ENST00000593398 557 ntBASIC3.43□□□□□ -1.86
DDX28Q9NUL7 TEX41-222ENST00000597173 1134 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
DDX28Q9NUL7 AC245884.10-201ENST00000597355 337 ntBASIC3.43□□□□□ -1.86
DDX28Q9NUL7 AL606490.9-201ENST00000603331 271 ntBASIC3.43□□□□□ -1.86
DDX28Q9NUL7 RPL23AP92-201ENST00000603609 255 ntBASIC3.43□□□□□ -1.86
DDX28Q9NUL7 SNORA51-201ENST00000606420 132 ntBASIC3.43□□□□□ -1.86
DDX28Q9NUL7 AL008729.1-201ENST00000606627 553 ntTSL 4 BASIC3.43□□□□□ -1.86
DDX28Q9NUL7 DUXAP10-204ENST00000612052 616 ntBASIC3.43□□□□□ -1.86
DDX28Q9NUL7 AC018816.2-201ENST00000621460 353 ntBASIC3.43□□□□□ -1.86
DDX28Q9NUL7 OR8B1P-202ENST00000641132 1178 ntBASIC3.43□□□□□ -1.86
DDX28Q9NUL7 ZNF804B-202ENST00000611114 3968 ntTSL 5 BASIC3.43□□□□□ -1.86
DDX28Q9NUL7 LRRC39-204ENST00000620882 1951 ntTSL 5 BASIC3.43□□□□□ -1.86
DDX28Q9NUL7 LINC00890-202ENST00000569275 4595 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
DDX28Q9NUL7 AC010733.2-201ENST00000589496 5702 ntBASIC3.43□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 99.2 ms