Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 RNU6-343P-201ENST00000364709 104 ntBASIC3.41□□□□□ -1.86
NKX3-1Q99801 CD80-202ENST00000383669 771 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
NKX3-1Q99801 Y_RNA.493-201ENST00000384422 102 ntBASIC3.41□□□□□ -1.86
NKX3-1Q99801 AC013286.1-201ENST00000412137 381 ntTSL 5 BASIC3.41□□□□□ -1.86
NKX3-1Q99801 AC069280.1-201ENST00000413094 439 ntTSL 3 BASIC3.41□□□□□ -1.86
NKX3-1Q99801 AC098484.2-201ENST00000414339 601 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
NKX3-1Q99801 AL035407.1-201ENST00000429211 571 ntBASIC3.41□□□□□ -1.86
NKX3-1Q99801 BTF3P10-201ENST00000433415 495 ntBASIC3.41□□□□□ -1.86
NKX3-1Q99801 KCTD9P3-201ENST00000434597 1169 ntBASIC3.41□□□□□ -1.86
NKX3-1Q99801 AL161725.2-201ENST00000442442 403 ntTSL 3 BASIC3.41□□□□□ -1.86
NKX3-1Q99801 AC007099.2-201ENST00000444852 336 ntTSL 5 BASIC3.41□□□□□ -1.86
NKX3-1Q99801 GAS5-223ENST00000452197 483 ntTSL 3 BASIC3.41□□□□□ -1.86
NKX3-1Q99801 MTCO3P11-201ENST00000455103 774 ntBASIC3.41□□□□□ -1.86
NKX3-1Q99801 BTF3P5-201ENST00000457252 467 ntBASIC3.41□□□□□ -1.86
NKX3-1Q99801 AL645608.2-201ENST00000458555 471 ntTSL 2 BASIC3.41□□□□□ -1.86
NKX3-1Q99801 MEMO1P3-201ENST00000459811 302 ntBASIC3.41□□□□□ -1.86
NKX3-1Q99801 MTND3P7-201ENST00000474435 343 ntBASIC3.41□□□□□ -1.86
NKX3-1Q99801 RPL21P103-201ENST00000479921 488 ntBASIC3.41□□□□□ -1.86
NKX3-1Q99801 RN7SL604P-201ENST00000492589 296 ntBASIC3.41□□□□□ -1.86
NKX3-1Q99801 AC106872.2-201ENST00000494303 480 ntBASIC3.41□□□□□ -1.86
NKX3-1Q99801 OR5H5P-201ENST00000503164 928 ntBASIC3.41□□□□□ -1.86
NKX3-1Q99801 AC097372.3-201ENST00000503593 522 ntTSL 3 BASIC3.41□□□□□ -1.86
NKX3-1Q99801 AC114981.1-201ENST00000503897 678 ntBASIC3.41□□□□□ -1.86
NKX3-1Q99801 AC114741.1-201ENST00000504357 464 ntTSL 2 BASIC3.41□□□□□ -1.86
NKX3-1Q99801 AC010255.1-201ENST00000504829 731 ntTSL 5 BASIC3.41□□□□□ -1.86
NKX3-1Q99801 MFAP3L-206ENST00000506110 548 ntTSL 3 BASIC3.41□□□□□ -1.86
NKX3-1Q99801 AC111000.2-201ENST00000507775 550 ntBASIC3.41□□□□□ -1.86
NKX3-1Q99801 AC107398.2-201ENST00000508081 601 ntTSL 5 BASIC3.41□□□□□ -1.86
NKX3-1Q99801 EGFLAM-AS2-201ENST00000512603 466 ntTSL 5 BASIC3.41□□□□□ -1.86
NKX3-1Q99801 AC093879.2-201ENST00000513645 427 ntTSL 3 BASIC3.41□□□□□ -1.86
NKX3-1Q99801 AC106895.1-201ENST00000515825 548 ntTSL 4 BASIC3.41□□□□□ -1.86
NKX3-1Q99801 NARSP2-201ENST00000518524 679 ntBASIC3.41□□□□□ -1.86
NKX3-1Q99801 AP003730.1-201ENST00000524605 285 ntBASIC3.41□□□□□ -1.86
NKX3-1Q99801 AC023034.1-202ENST00000558153 684 ntTSL 3 BASIC3.41□□□□□ -1.86
NKX3-1Q99801 LINC02126-202ENST00000563754 750 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
NKX3-1Q99801 AC011518.1-202ENST00000592668 407 ntTSL 5 BASIC3.41□□□□□ -1.86
NKX3-1Q99801 SATB1-AS1-207ENST00000593741 955 ntTSL 5 BASIC3.41□□□□□ -1.86
NKX3-1Q99801 VN1R92P-201ENST00000598511 928 ntBASIC3.41□□□□□ -1.86
NKX3-1Q99801 AC135012.2-201ENST00000600234 479 ntTSL 2 BASIC3.41□□□□□ -1.86
NKX3-1Q99801 AL590235.2-201ENST00000602641 632 ntTSL 5 BASIC3.41□□□□□ -1.86
NKX3-1Q99801 AL163642.2-201ENST00000604722 1019 ntBASIC3.41□□□□□ -1.86
NKX3-1Q99801 AL591034.3-201ENST00000605511 685 ntBASIC3.41□□□□□ -1.86
NKX3-1Q99801 BRDTP1-201ENST00000605735 677 ntBASIC3.41□□□□□ -1.86
NKX3-1Q99801 AL360267.1-201ENST00000607309 666 ntTSL 4 BASIC3.41□□□□□ -1.86
NKX3-1Q99801 AC097065.2-201ENST00000608159 533 ntBASIC3.41□□□□□ -1.86
NKX3-1Q99801 AL159169.3-201ENST00000608871 561 ntBASIC3.41□□□□□ -1.86
NKX3-1Q99801 AC004223.4-201ENST00000612426 332 ntBASIC3.41□□□□□ -1.86
NKX3-1Q99801 AC073968.1-201ENST00000618594 637 ntBASIC3.41□□□□□ -1.86
NKX3-1Q99801 AC243585.2-201ENST00000619099 508 ntTSL 3 BASIC3.41□□□□□ -1.86
NKX3-1Q99801 AC068831.8-201ENST00000620171 435 ntBASIC3.41□□□□□ -1.86
NKX3-1Q99801 AC018816.2-201ENST00000621460 353 ntBASIC3.41□□□□□ -1.86
NKX3-1Q99801 AC006065.5-201ENST00000623427 349 ntBASIC3.41□□□□□ -1.86
NKX3-1Q99801 OR51G1-201ENST00000623849 966 ntAPPRIS P1 BASIC3.41□□□□□ -1.86
NKX3-1Q99801 AC007494.3-201ENST00000624660 743 ntBASIC3.41□□□□□ -1.86
NKX3-1Q99801 MIR3974-201ENST00000637126 96 ntBASIC3.41□□□□□ -1.86
NKX3-1Q99801 ZNF382-210ENST00000639288 834 ntTSL 5 BASIC3.41□□□□□ -1.86
NKX3-1Q99801 CLHC1-201ENST00000401408 2248 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
NKX3-1Q99801 CCDC168-201ENST00000322527 21466 ntAPPRIS P1 TSL 3 BASIC3.41□□□□□ -1.86
NKX3-1Q99801 AL022578.1-201ENST00000439330 1433 ntBASIC3.41□□□□□ -1.86
NKX3-1Q99801 OR4G11P-202ENST00000642116 1414 ntBASIC3.41□□□□□ -1.86
NKX3-1Q99801 FMNL2-202ENST00000475377 3648 ntTSL 5 BASIC3.41□□□□□ -1.86
NKX3-1Q99801 ABCD2-201ENST00000308666 6238 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
NKX3-1Q99801 TNPO1P3-201ENST00000436471 2662 ntBASIC3.41□□□□□ -1.86
NKX3-1Q99801 RRAS2-202ENST00000414023 1884 ntTSL 2 BASIC3.41□□□□□ -1.86
NKX3-1Q99801 POLK-204ENST00000504026 1484 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
NKX3-1Q99801 ZFAND6-212ENST00000559775 1602 ntAPPRIS P1 TSL 2 BASIC3.41□□□□□ -1.86
NKX3-1Q99801 MFN1-201ENST00000263969 2754 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.86
NKX3-1Q99801 ETV1-203ENST00000403527 3363 ntTSL 1 (best) BASIC3.4□□□□□ -1.86
NKX3-1Q99801 CLIC2-202ENST00000369449 2655 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.86
NKX3-1Q99801 PABPC1P7-201ENST00000413177 1513 ntBASIC3.4□□□□□ -1.86
NKX3-1Q99801 ZNF734P-201ENST00000419494 1534 ntBASIC3.4□□□□□ -1.86
NKX3-1Q99801 ANO3-204ENST00000531568 3117 ntAPPRIS ALT2 TSL 2 BASIC3.4□□□□□ -1.86
NKX3-1Q99801 USP9Y-201ENST00000338981 10036 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.86
NKX3-1Q99801 ATXN3-248ENST00000558190 26812 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
NKX3-1Q99801 CFHR4-201ENST00000251424 1292 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
NKX3-1Q99801 OR11H4-201ENST00000315409 1082 ntBASIC3.4□□□□□ -1.87
NKX3-1Q99801 C8orf59-201ENST00000321777 325 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
NKX3-1Q99801 RNU6-660P-201ENST00000364566 109 ntBASIC3.4□□□□□ -1.87
NKX3-1Q99801 RNU6-339P-201ENST00000384310 107 ntBASIC3.4□□□□□ -1.87
NKX3-1Q99801 MIR124-3-201ENST00000384866 87 ntBASIC3.4□□□□□ -1.87
NKX3-1Q99801 MT-TC-201ENST00000387405 66 ntBASIC3.4□□□□□ -1.87
NKX3-1Q99801 AC007066.1-201ENST00000392902 381 ntBASIC3.4□□□□□ -1.87
NKX3-1Q99801 HIGD1C-201ENST00000398455 371 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
NKX3-1Q99801 AL355379.1-201ENST00000405542 640 ntBASIC3.4□□□□□ -1.87
NKX3-1Q99801 AC002456.1-203ENST00000412669 449 ntTSL 3 BASIC3.4□□□□□ -1.87
NKX3-1Q99801 TPMTP2-201ENST00000414372 726 ntBASIC3.4□□□□□ -1.87
NKX3-1Q99801 LANCL1-AS1-201ENST00000416344 714 ntTSL 3 BASIC3.4□□□□□ -1.87
NKX3-1Q99801 AC108032.1-201ENST00000416706 207 ntBASIC3.4□□□□□ -1.87
NKX3-1Q99801 AC127526.1-201ENST00000417526 366 ntBASIC3.4□□□□□ -1.87
NKX3-1Q99801 GLRXP1-201ENST00000423261 334 ntBASIC3.4□□□□□ -1.87
NKX3-1Q99801 PSMA6P3-201ENST00000428242 164 ntBASIC3.4□□□□□ -1.87
NKX3-1Q99801 ATP5HP2-201ENST00000433885 485 ntBASIC3.4□□□□□ -1.87
NKX3-1Q99801 TTTY20-201ENST00000434487 259 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
NKX3-1Q99801 AP000477.1-202ENST00000434859 847 ntTSL 3 BASIC3.4□□□□□ -1.87
NKX3-1Q99801 AC018742.1-201ENST00000435237 488 ntTSL 3 BASIC3.4□□□□□ -1.87
NKX3-1Q99801 LINC01423-202ENST00000436845 423 ntTSL 2 BASIC3.4□□□□□ -1.87
NKX3-1Q99801 MTND4P6-201ENST00000438297 472 ntBASIC3.4□□□□□ -1.87
NKX3-1Q99801 AC004485.1-201ENST00000439839 527 ntTSL 5 BASIC3.4□□□□□ -1.87
NKX3-1Q99801 AC009950.1-206ENST00000445199 517 ntTSL 3 BASIC3.4□□□□□ -1.87
NKX3-1Q99801 AL590399.6-201ENST00000446396 307 ntBASIC3.4□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 168.8 ms