Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 NBPF14-206ENST00000614999 10080 ntTSL 5 BASIC4.81□□□□□ -1.64
CLIP3Q96DZ5 FAR2-203ENST00000547116 1787 ntTSL 2 BASIC4.81□□□□□ -1.64
CLIP3Q96DZ5 KLF12-201ENST00000377669 10637 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
CLIP3Q96DZ5 RPS4Y1-201ENST00000250784 1305 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
CLIP3Q96DZ5 DCAF13P1-201ENST00000495256 1330 ntBASIC4.81□□□□□ -1.64
CLIP3Q96DZ5 SPEF2-216ENST00000637569 7350 ntAPPRIS ALT2 TSL 5 BASIC4.81□□□□□ -1.64
CLIP3Q96DZ5 SLC38A2-209ENST00000551374 2802 ntTSL 2 BASIC4.81□□□□□ -1.64
CLIP3Q96DZ5 AC092447.10-201ENST00000620607 1652 ntBASIC4.81□□□□□ -1.64
CLIP3Q96DZ5 R3HDM1-201ENST00000264160 4648 ntAPPRIS P3 TSL 1 (best) BASIC4.81□□□□□ -1.64
CLIP3Q96DZ5 LRRC53-201ENST00000294635 3859 ntAPPRIS P1 TSL 5 BASIC4.81□□□□□ -1.64
CLIP3Q96DZ5 Z94721.2-201ENST00000609590 5310 ntTSL 2 BASIC4.81□□□□□ -1.64
CLIP3Q96DZ5 OR5A1-202ENST00000641045 8612 ntAPPRIS P1 BASIC4.81□□□□□ -1.64
CLIP3Q96DZ5 RANBP6-201ENST00000259569 4576 ntAPPRIS P1 BASIC4.81□□□□□ -1.64
CLIP3Q96DZ5 RNA5SP502-201ENST00000362694 119 ntBASIC4.81□□□□□ -1.64
CLIP3Q96DZ5 RN7SKP115-201ENST00000363177 317 ntBASIC4.81□□□□□ -1.64
CLIP3Q96DZ5 RNU6-263P-201ENST00000363811 107 ntBASIC4.81□□□□□ -1.64
CLIP3Q96DZ5 CFAP126-201ENST00000367974 774 ntAPPRIS P1 TSL 2 BASIC4.81□□□□□ -1.64
CLIP3Q96DZ5 NFIB-202ENST00000380924 840 ntTSL 5 BASIC4.81□□□□□ -1.64
CLIP3Q96DZ5 RNU6-1279P-201ENST00000383917 103 ntBASIC4.81□□□□□ -1.64
CLIP3Q96DZ5 RNU6-769P-201ENST00000384407 104 ntBASIC4.81□□□□□ -1.64
CLIP3Q96DZ5 LIMS1-AS1-201ENST00000411710 477 ntTSL 3 BASIC4.81□□□□□ -1.64
CLIP3Q96DZ5 LINC01359-201ENST00000415842 1157 ntTSL 2 BASIC4.81□□□□□ -1.64
CLIP3Q96DZ5 AC002456.1-201ENST00000415965 317 ntTSL 5 BASIC4.81□□□□□ -1.64
CLIP3Q96DZ5 AC127526.1-201ENST00000417526 366 ntBASIC4.81□□□□□ -1.64
CLIP3Q96DZ5 OR2AM1P-201ENST00000422137 422 ntBASIC4.81□□□□□ -1.64
CLIP3Q96DZ5 AL356583.2-201ENST00000426536 280 ntBASIC4.81□□□□□ -1.64
CLIP3Q96DZ5 AL360081.1-201ENST00000428299 555 ntBASIC4.81□□□□□ -1.64
CLIP3Q96DZ5 TIMM9P3-201ENST00000428659 274 ntBASIC4.81□□□□□ -1.64
CLIP3Q96DZ5 AC004875.1-201ENST00000432702 378 ntTSL 3 BASIC4.81□□□□□ -1.64
CLIP3Q96DZ5 AL049745.1-201ENST00000433953 286 ntBASIC4.81□□□□□ -1.64
CLIP3Q96DZ5 AC008278.2-201ENST00000438178 409 ntTSL 3 BASIC4.81□□□□□ -1.64
CLIP3Q96DZ5 NUTM2A-AS1-209ENST00000447424 571 ntTSL 3 BASIC4.81□□□□□ -1.64
CLIP3Q96DZ5 AC090804.1-201ENST00000448870 490 ntBASIC4.81□□□□□ -1.64
CLIP3Q96DZ5 UTAT33-202ENST00000449177 565 ntTSL 2 BASIC4.81□□□□□ -1.64
CLIP3Q96DZ5 RGS5-217ENST00000451759 835 ntTSL 3 BASIC4.81□□□□□ -1.64
CLIP3Q96DZ5 AL603839.1-201ENST00000453437 432 ntTSL 2 BASIC4.81□□□□□ -1.64
CLIP3Q96DZ5 SNRPFP4-201ENST00000456366 242 ntBASIC4.81□□□□□ -1.64
CLIP3Q96DZ5 AC112229.2-201ENST00000456683 476 ntTSL 5 BASIC4.81□□□□□ -1.64
CLIP3Q96DZ5 snoU13.8-201ENST00000458890 104 ntBASIC4.81□□□□□ -1.64
CLIP3Q96DZ5 SNORD108-201ENST00000459332 71 ntBASIC4.81□□□□□ -1.64
CLIP3Q96DZ5 AL591473.1-201ENST00000464297 313 ntBASIC4.81□□□□□ -1.64
CLIP3Q96DZ5 AC034222.1-201ENST00000494052 532 ntBASIC4.81□□□□□ -1.64
CLIP3Q96DZ5 AC114786.4-201ENST00000508771 728 ntBASIC4.81□□□□□ -1.64
CLIP3Q96DZ5 AC002456.2-201ENST00000509356 380 ntBASIC4.81□□□□□ -1.64
CLIP3Q96DZ5 AC097375.2-201ENST00000510416 579 ntTSL 5 BASIC4.81□□□□□ -1.64
CLIP3Q96DZ5 CTD-2350J17.1-202ENST00000510456 360 ntTSL 2 BASIC4.81□□□□□ -1.64
CLIP3Q96DZ5 AC025437.5-201ENST00000522769 314 ntTSL 3 BASIC4.81□□□□□ -1.64
CLIP3Q96DZ5 NRG1-IT1-203ENST00000523743 292 ntTSL 3 BASIC4.81□□□□□ -1.64
CLIP3Q96DZ5 AC132219.1-201ENST00000524337 478 ntTSL 5 BASIC4.81□□□□□ -1.64
CLIP3Q96DZ5 OSBPL9P2-201ENST00000526582 1228 ntBASIC4.81□□□□□ -1.64
CLIP3Q96DZ5 OR4P1P-201ENST00000530808 1136 ntBASIC4.81□□□□□ -1.64
CLIP3Q96DZ5 AC008033.2-201ENST00000542626 177 ntBASIC4.81□□□□□ -1.64
CLIP3Q96DZ5 AP003781.1-201ENST00000543403 404 ntTSL 3 BASIC4.81□□□□□ -1.64
CLIP3Q96DZ5 AC087501.4-201ENST00000574460 235 ntTSL 5 BASIC4.81□□□□□ -1.64
CLIP3Q96DZ5 AC090371.2-203ENST00000578782 473 ntTSL 3 BASIC4.81□□□□□ -1.64
CLIP3Q96DZ5 AC107031.1-201ENST00000604939 347 ntTSL 2 BASIC4.81□□□□□ -1.64
CLIP3Q96DZ5 BCRP9-201ENST00000605312 388 ntBASIC4.81□□□□□ -1.64
CLIP3Q96DZ5 AC097717.1-249ENST00000608040 401 ntTSL 5 BASIC4.81□□□□□ -1.64
CLIP3Q96DZ5 MIR6839-201ENST00000620425 113 ntBASIC4.81□□□□□ -1.64
CLIP3Q96DZ5 AC093591.3-201ENST00000634516 308 ntBASIC4.81□□□□□ -1.64
CLIP3Q96DZ5 AC109462.4-201ENST00000637882 581 ntTSL 5 BASIC4.81□□□□□ -1.64
CLIP3Q96DZ5 AL445487.1-201ENST00000415694 1580 ntBASIC4.81□□□□□ -1.64
CLIP3Q96DZ5 MS4A1-207ENST00000532073 2560 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
CLIP3Q96DZ5 LINC01247-201ENST00000448901 4209 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
CLIP3Q96DZ5 AL356489.2-201ENST00000566968 3528 ntBASIC4.81□□□□□ -1.64
CLIP3Q96DZ5 STXBP4-202ENST00000398391 2160 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
CLIP3Q96DZ5 MYO9A-209ENST00000564571 8111 ntAPPRIS ALT2 TSL 1 (best) BASIC4.81□□□□□ -1.64
CLIP3Q96DZ5 ATP2C1-205ENST00000504381 3498 ntTSL 2 BASIC4.81□□□□□ -1.64
CLIP3Q96DZ5 THUMPD3P1-201ENST00000506556 1480 ntBASIC4.81□□□□□ -1.64
CLIP3Q96DZ5 AC027287.1-201ENST00000553115 1453 ntBASIC4.81□□□□□ -1.64
CLIP3Q96DZ5 USP26-203ENST00000511190 3665 ntAPPRIS P1 TSL 2 BASIC4.81□□□□□ -1.64
CLIP3Q96DZ5 LINC02431-201ENST00000503929 3601 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
CLIP3Q96DZ5 IPO11-203ENST00000409534 1725 ntTSL 2 BASIC4.8□□□□□ -1.64
CLIP3Q96DZ5 DCDC1-211ENST00000597505 5352 ntAPPRIS ALT2 TSL 5 BASIC4.8□□□□□ -1.64
CLIP3Q96DZ5 LINC02456-201ENST00000635615 1323 ntTSL 5 BASIC4.8□□□□□ -1.64
CLIP3Q96DZ5 AL049780.3-201ENST00000624612 1583 ntBASIC4.8□□□□□ -1.64
CLIP3Q96DZ5 RNA5SP258-201ENST00000362750 119 ntBASIC4.8□□□□□ -1.64
CLIP3Q96DZ5 Y_RNA.279-201ENST00000364763 95 ntBASIC4.8□□□□□ -1.64
CLIP3Q96DZ5 U3.15-201ENST00000365398 212 ntBASIC4.8□□□□□ -1.64
CLIP3Q96DZ5 SNORA2.3-201ENST00000383920 135 ntBASIC4.8□□□□□ -1.64
CLIP3Q96DZ5 RNU6-837P-201ENST00000391056 108 ntBASIC4.8□□□□□ -1.64
CLIP3Q96DZ5 ERMN-204ENST00000409925 556 ntTSL 4 BASIC4.8□□□□□ -1.64
CLIP3Q96DZ5 ARSD-AS1-201ENST00000414053 816 ntTSL 2 BASIC4.8□□□□□ -1.64
CLIP3Q96DZ5 E2F6P2-201ENST00000420708 748 ntBASIC4.8□□□□□ -1.64
CLIP3Q96DZ5 AF228730.4-201ENST00000421457 183 ntBASIC4.8□□□□□ -1.64
CLIP3Q96DZ5 AC068599.1-201ENST00000422558 567 ntTSL 4 BASIC4.8□□□□□ -1.64
CLIP3Q96DZ5 AC107081.2-201ENST00000425779 802 ntTSL 5 BASIC4.8□□□□□ -1.64
CLIP3Q96DZ5 AL445669.1-201ENST00000426743 755 ntBASIC4.8□□□□□ -1.64
CLIP3Q96DZ5 AP001117.1-201ENST00000428205 609 ntTSL 2 BASIC4.8□□□□□ -1.64
CLIP3Q96DZ5 TEX41-205ENST00000431734 529 ntTSL 4 BASIC4.8□□□□□ -1.64
CLIP3Q96DZ5 AC109583.1-201ENST00000432156 268 ntBASIC4.8□□□□□ -1.64
CLIP3Q96DZ5 PMCHL2-203ENST00000457791 237 ntBASIC4.8□□□□□ -1.64
CLIP3Q96DZ5 AC092324.1-201ENST00000468671 324 ntBASIC4.8□□□□□ -1.64
CLIP3Q96DZ5 ZBTB20-AS2-201ENST00000478301 372 ntTSL 2 BASIC4.8□□□□□ -1.64
CLIP3Q96DZ5 GSTM1-206ENST00000483399 512 ntTSL 3 BASIC4.8□□□□□ -1.64
CLIP3Q96DZ5 LINC00492-201ENST00000504436 593 ntTSL 3 BASIC4.8□□□□□ -1.64
CLIP3Q96DZ5 AC006390.1-201ENST00000508068 283 ntBASIC4.8□□□□□ -1.64
CLIP3Q96DZ5 AC034234.1-202ENST00000508696 339 ntTSL 3 BASIC4.8□□□□□ -1.64
CLIP3Q96DZ5 AC008700.1-202ENST00000513657 468 ntTSL 5 BASIC4.8□□□□□ -1.64
CLIP3Q96DZ5 RNA5SP43-201ENST00000516559 110 ntBASIC4.8□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 81.2 ms