Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 AJ009632.2-202ENST00000634644 1513 ntTSL 5 BASIC3.16□□□□□ -1.9
USP54Q70EL1 AC107021.2-201ENST00000567714 2095 ntBASIC3.16□□□□□ -1.9
USP54Q70EL1 SNORA51.4-201ENST00000364993 124 ntBASIC3.16□□□□□ -1.9
USP54Q70EL1 MAPK8-202ENST00000374174 739 ntTSL 3 BASIC3.16□□□□□ -1.9
USP54Q70EL1 RNU6-178P-201ENST00000384631 104 ntBASIC3.16□□□□□ -1.9
USP54Q70EL1 TANK-204ENST00000403609 555 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
USP54Q70EL1 SNORD88.1-201ENST00000408684 91 ntBASIC3.16□□□□□ -1.9
USP54Q70EL1 VTA1P1-201ENST00000414044 866 ntBASIC3.16□□□□□ -1.9
USP54Q70EL1 MTCO2P17-201ENST00000424336 677 ntBASIC3.16□□□□□ -1.9
USP54Q70EL1 AL360169.1-201ENST00000435116 143 ntTSL 5 BASIC3.16□□□□□ -1.9
USP54Q70EL1 RPL36AP33-201ENST00000450395 310 ntBASIC3.16□□□□□ -1.9
USP54Q70EL1 RN7SL283P-201ENST00000489055 303 ntBASIC3.16□□□□□ -1.9
USP54Q70EL1 RPL9P6-201ENST00000492764 598 ntBASIC3.16□□□□□ -1.9
USP54Q70EL1 AC023202.1-201ENST00000521681 491 ntTSL 3 BASIC3.16□□□□□ -1.9
USP54Q70EL1 AC021269.2-201ENST00000532318 330 ntBASIC3.16□□□□□ -1.9
USP54Q70EL1 AC025260.1-201ENST00000548858 430 ntBASIC3.16□□□□□ -1.9
USP54Q70EL1 NF1P10-201ENST00000613227 742 ntBASIC3.16□□□□□ -1.9
USP54Q70EL1 PISRT1-201ENST00000626175 531 ntBASIC3.16□□□□□ -1.9
USP54Q70EL1 LRRC77P-213ENST00000637727 880 ntBASIC3.16□□□□□ -1.9
USP54Q70EL1 MTND5P27-201ENST00000428871 1720 ntBASIC3.16□□□□□ -1.9
USP54Q70EL1 AC091152.2-201ENST00000591628 2569 ntBASIC3.15□□□□□ -1.9
USP54Q70EL1 BPIFC-202ENST00000397450 458 ntTSL 1 (best) BASIC3.15□□□□□ -1.9
USP54Q70EL1 AC007064.1-201ENST00000412238 351 ntBASIC3.15□□□□□ -1.9
USP54Q70EL1 AC013268.2-201ENST00000420753 337 ntBASIC3.15□□□□□ -1.9
USP54Q70EL1 AL645634.2-201ENST00000431956 411 ntTSL 3 BASIC3.15□□□□□ -1.9
USP54Q70EL1 SAR1B-211ENST00000509937 455 ntTSL 5 BASIC3.15□□□□□ -1.9
USP54Q70EL1 RNU6ATAC9P-201ENST00000516210 116 ntBASIC3.15□□□□□ -1.9
USP54Q70EL1 LINC02399-201ENST00000547094 400 ntTSL 2 BASIC3.15□□□□□ -1.9
USP54Q70EL1 AC025281.1-201ENST00000567026 265 ntBASIC3.15□□□□□ -1.9
USP54Q70EL1 SNORD39.2-201ENST00000579995 76 ntBASIC3.15□□□□□ -1.9
USP54Q70EL1 AC003973.1-201ENST00000600071 546 ntTSL 4 BASIC3.15□□□□□ -1.9
USP54Q70EL1 AC046143.2-201ENST00000609789 160 ntBASIC3.15□□□□□ -1.9
USP54Q70EL1 AC123768.4-201ENST00000616244 701 ntBASIC3.15□□□□□ -1.9
USP54Q70EL1 GNAI3-201ENST00000369851 27174 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
USP54Q70EL1 AC104454.1-201ENST00000421341 1401 ntBASIC3.15□□□□□ -1.91
USP54Q70EL1 RNA5SP99-201ENST00000364020 114 ntBASIC3.14□□□□□ -1.91
USP54Q70EL1 RNU6-1263P-201ENST00000384601 106 ntBASIC3.14□□□□□ -1.91
USP54Q70EL1 TRAJ26-201ENST00000390511 60 ntAPPRIS P1 BASIC3.14□□□□□ -1.91
USP54Q70EL1 HMGB1P11-201ENST00000413899 637 ntBASIC3.14□□□□□ -1.91
USP54Q70EL1 HMGN2P23-201ENST00000456759 269 ntBASIC3.14□□□□□ -1.91
USP54Q70EL1 AC068587.2-201ENST00000478386 781 ntBASIC3.14□□□□□ -1.91
USP54Q70EL1 IGLVIV-66-1-201ENST00000521832 460 ntBASIC3.14□□□□□ -1.91
USP54Q70EL1 PPP1R42-212ENST00000522909 1282 ntAPPRIS ALT2 TSL 5 BASIC3.14□□□□□ -1.91
USP54Q70EL1 SEMA3D-201ENST00000284136 6265 ntAPPRIS P1 TSL 5 BASIC3.14□□□□□ -1.91
USP54Q70EL1 SAGE1-202ENST00000370709 2879 ntAPPRIS P2 TSL 5 BASIC3.14□□□□□ -1.91
USP54Q70EL1 Z99496.1-201ENST00000469424 1477 ntBASIC3.14□□□□□ -1.91
USP54Q70EL1 SNORD21-201ENST00000383953 95 ntBASIC3.14□□□□□ -1.91
USP54Q70EL1 NCSTNP1-201ENST00000406229 144 ntBASIC3.14□□□□□ -1.91
USP54Q70EL1 AC009302.1-201ENST00000417147 390 ntBASIC3.14□□□□□ -1.91
USP54Q70EL1 AC006076.1-201ENST00000423233 345 ntTSL 3 BASIC3.14□□□□□ -1.91
USP54Q70EL1 AC009969.1-201ENST00000438726 172 ntBASIC3.14□□□□□ -1.91
USP54Q70EL1 AP000936.1-201ENST00000442124 483 ntTSL 5 BASIC3.14□□□□□ -1.91
USP54Q70EL1 TIPARP-AS1-202ENST00000478005 554 ntTSL 4 BASIC3.14□□□□□ -1.91
USP54Q70EL1 NRBF2P1-201ENST00000587407 859 ntBASIC3.14□□□□□ -1.91
USP54Q70EL1 GCSAML-206ENST00000527084 1308 ntAPPRIS ALT2 TSL 1 (best) BASIC3.13□□□□□ -1.91
USP54Q70EL1 AKAP9-203ENST00000359028 12247 ntAPPRIS ALT2 TSL 5 BASIC3.13□□□□□ -1.91
USP54Q70EL1 AL136964.1-201ENST00000622038 2990 ntBASIC3.13□□□□□ -1.91
USP54Q70EL1 ZNF676-201ENST00000397121 2944 ntAPPRIS P1 TSL 2 BASIC3.13□□□□□ -1.91
USP54Q70EL1 SNORD6-201ENST00000365444 73 ntBASIC3.13□□□□□ -1.91
USP54Q70EL1 RNU6-328P-201ENST00000390887 106 ntBASIC3.13□□□□□ -1.91
USP54Q70EL1 GSTA12P-201ENST00000402398 508 ntBASIC3.13□□□□□ -1.91
USP54Q70EL1 PSMA4-202ENST00000413382 1019 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
USP54Q70EL1 AL138787.1-202ENST00000437804 898 ntBASIC3.13□□□□□ -1.91
USP54Q70EL1 RPL23AP44-201ENST00000482216 473 ntBASIC3.13□□□□□ -1.91
USP54Q70EL1 AC112496.1-201ENST00000497961 562 ntTSL 5 BASIC3.13□□□□□ -1.91
USP54Q70EL1 BMPR1B-AS1-201ENST00000510795 511 ntTSL 3 BASIC3.13□□□□□ -1.91
USP54Q70EL1 RNA5SP281-201ENST00000516504 135 ntBASIC3.13□□□□□ -1.91
USP54Q70EL1 MAL2-205ENST00000521048 575 ntTSL 4 BASIC3.13□□□□□ -1.91
USP54Q70EL1 AC134043.1-201ENST00000521204 638 ntTSL 3 BASIC3.13□□□□□ -1.91
USP54Q70EL1 AP002833.1-201ENST00000530572 566 ntTSL 3 BASIC3.13□□□□□ -1.91
USP54Q70EL1 AC005225.1-201ENST00000553394 937 ntTSL 3 BASIC3.13□□□□□ -1.91
USP54Q70EL1 PSMG2-204ENST00000585331 983 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
USP54Q70EL1 AC012313.1-202ENST00000597309 423 ntTSL 3 BASIC3.13□□□□□ -1.91
USP54Q70EL1 MACROD2-IT1-202ENST00000605675 575 ntTSL 5 BASIC3.13□□□□□ -1.91
USP54Q70EL1 MIR6733-201ENST00000635723 61 ntBASIC3.13□□□□□ -1.91
USP54Q70EL1 FAM208A-202ENST00000431842 7119 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
USP54Q70EL1 NEDD1-204ENST00000457368 3162 ntTSL 2 BASIC3.13□□□□□ -1.91
USP54Q70EL1 EVI5-201ENST00000370331 7403 ntAPPRIS P3 TSL 1 (best) BASIC3.12□□□□□ -1.91
USP54Q70EL1 EVI5-208ENST00000540033 7436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.12□□□□□ -1.91
USP54Q70EL1 OR51A7-202ENST00000641490 2186 ntAPPRIS P1 BASIC3.12□□□□□ -1.91
USP54Q70EL1 C1orf189-201ENST00000368525 387 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
USP54Q70EL1 S100G-201ENST00000380200 455 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
USP54Q70EL1 RWDD4P2-201ENST00000426392 563 ntBASIC3.12□□□□□ -1.91
USP54Q70EL1 AC093151.1-201ENST00000427711 313 ntBASIC3.12□□□□□ -1.91
USP54Q70EL1 ISCA1P6-201ENST00000427740 390 ntBASIC3.12□□□□□ -1.91
USP54Q70EL1 HMGB3P10-201ENST00000434734 572 ntBASIC3.12□□□□□ -1.91
USP54Q70EL1 AL139294.1-201ENST00000435739 512 ntTSL 2 BASIC3.12□□□□□ -1.91
USP54Q70EL1 GSTA11P-201ENST00000452866 669 ntBASIC3.12□□□□□ -1.91
USP54Q70EL1 LEKR1-206ENST00000483177 546 ntTSL 3 BASIC3.12□□□□□ -1.91
USP54Q70EL1 RWDD4P1-201ENST00000488019 565 ntBASIC3.12□□□□□ -1.91
USP54Q70EL1 AC106872.3-201ENST00000495104 446 ntBASIC3.12□□□□□ -1.91
USP54Q70EL1 AC112673.1-201ENST00000513168 575 ntBASIC3.12□□□□□ -1.91
USP54Q70EL1 AP003467.2-201ENST00000520175 319 ntBASIC3.12□□□□□ -1.91
USP54Q70EL1 C11orf1-204ENST00000530214 599 ntTSL 5 BASIC3.12□□□□□ -1.91
USP54Q70EL1 LINC02325-202ENST00000554260 567 ntTSL 4 BASIC3.12□□□□□ -1.91
USP54Q70EL1 AC110994.2-201ENST00000635481 492 ntBASIC3.12□□□□□ -1.91
USP54Q70EL1 AC117529.2-201ENST00000512159 2068 ntBASIC3.12□□□□□ -1.91
USP54Q70EL1 DPP10-205ENST00000410059 6278 ntAPPRIS ALT2 TSL 1 (best) BASIC3.11□□□□□ -1.91
USP54Q70EL1 FOXP2-210ENST00000403559 6415 ntTSL 2 BASIC3.11□□□□□ -1.91
USP54Q70EL1 FRG1BP-201ENST00000278882 761 ntBASIC3.11□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 102.4 ms