Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 AL354760.1-201ENST00000608357 643 ntBASIC4.83□□□□□ -1.64
VPS53Q5VIR6 OR6R2P-201ENST00000609216 300 ntBASIC4.83□□□□□ -1.64
VPS53Q5VIR6 ANKRD36C-207ENST00000612359 650 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
VPS53Q5VIR6 AC087241.4-201ENST00000612441 480 ntBASIC4.83□□□□□ -1.64
VPS53Q5VIR6 AC112484.5-201ENST00000624189 228 ntBASIC4.83□□□□□ -1.64
VPS53Q5VIR6 AC120349.2-201ENST00000625002 298 ntBASIC4.83□□□□□ -1.64
VPS53Q5VIR6 OR10D3-202ENST00000641351 3561 ntAPPRIS P1 BASIC4.83□□□□□ -1.64
VPS53Q5VIR6 OR10D3-203ENST00000641546 3566 ntAPPRIS P1 BASIC4.83□□□□□ -1.64
VPS53Q5VIR6 ZNF480-202ENST00000335090 2722 ntTSL 3 BASIC4.83□□□□□ -1.64
VPS53Q5VIR6 KIF15-203ENST00000425755 3460 ntTSL 5 BASIC4.83□□□□□ -1.64
VPS53Q5VIR6 FAM126A-204ENST00000432176 13177 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
VPS53Q5VIR6 FEZ2-201ENST00000305852 1782 ntTSL 5 BASIC4.83□□□□□ -1.64
VPS53Q5VIR6 ZNF382-203ENST00000435416 3865 ntAPPRIS ALT1 TSL 1 (best) BASIC4.83□□□□□ -1.64
VPS53Q5VIR6 HMGB1-204ENST00000399489 1727 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
VPS53Q5VIR6 HERC4-204ENST00000395198 4445 ntAPPRIS ALT1 TSL 1 (best) BASIC4.83□□□□□ -1.64
VPS53Q5VIR6 TAS2R30-201ENST00000539585 1687 ntAPPRIS P1 BASIC4.83□□□□□ -1.64
VPS53Q5VIR6 KCNU1-201ENST00000399881 3695 ntAPPRIS P1 TSL 2 BASIC4.83□□□□□ -1.64
VPS53Q5VIR6 IQCB2P-201ENST00000401788 1633 ntBASIC4.83□□□□□ -1.64
VPS53Q5VIR6 LINC00630-205ENST00000440496 2101 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
VPS53Q5VIR6 MTUS1-216ENST00000519263 4089 ntTSL 2 BASIC4.82□□□□□ -1.64
VPS53Q5VIR6 FAT3-204ENST00000525166 18699 ntTSL 5 BASIC4.82□□□□□ -1.64
VPS53Q5VIR6 AL122126.1-201ENST00000546905 1318 ntBASIC4.82□□□□□ -1.64
VPS53Q5VIR6 ACSM3-201ENST00000289416 2845 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
VPS53Q5VIR6 AKAP14-201ENST00000334356 608 ntAPPRIS ALT2 TSL 5 BASIC4.82□□□□□ -1.64
VPS53Q5VIR6 Y_RNA.25-201ENST00000362528 102 ntBASIC4.82□□□□□ -1.64
VPS53Q5VIR6 RNU6-1243P-201ENST00000364028 107 ntBASIC4.82□□□□□ -1.64
VPS53Q5VIR6 RNU6-1119P-201ENST00000384349 108 ntBASIC4.82□□□□□ -1.64
VPS53Q5VIR6 DEFB108C-201ENST00000400154 252 ntBASIC4.82□□□□□ -1.64
VPS53Q5VIR6 AC007899.1-201ENST00000412776 775 ntBASIC4.82□□□□□ -1.64
VPS53Q5VIR6 FCF1P2-201ENST00000415284 583 ntBASIC4.82□□□□□ -1.64
VPS53Q5VIR6 AC092941.1-201ENST00000415940 427 ntTSL 5 BASIC4.82□□□□□ -1.64
VPS53Q5VIR6 DYDC1-203ENST00000421924 708 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
VPS53Q5VIR6 LINC00457-201ENST00000428706 413 ntTSL 3 BASIC4.82□□□□□ -1.64
VPS53Q5VIR6 AC093581.1-202ENST00000430890 391 ntTSL 2 BASIC4.82□□□□□ -1.64
VPS53Q5VIR6 AC017048.2-201ENST00000431455 822 ntTSL 3 BASIC4.82□□□□□ -1.64
VPS53Q5VIR6 UBE2FP3-201ENST00000436366 524 ntBASIC4.82□□□□□ -1.64
VPS53Q5VIR6 MTND2P20-201ENST00000440805 661 ntBASIC4.82□□□□□ -1.64
VPS53Q5VIR6 CDC27P1-201ENST00000445384 715 ntBASIC4.82□□□□□ -1.64
VPS53Q5VIR6 AL357140.2-201ENST00000445884 440 ntTSL 3 BASIC4.82□□□□□ -1.64
VPS53Q5VIR6 ST13P20-201ENST00000447996 1065 ntBASIC4.82□□□□□ -1.64
VPS53Q5VIR6 SNRPGP9-201ENST00000456025 225 ntBASIC4.82□□□□□ -1.64
VPS53Q5VIR6 CFTRP1-201ENST00000456646 183 ntBASIC4.82□□□□□ -1.64
VPS53Q5VIR6 NF1P3-201ENST00000457709 450 ntBASIC4.82□□□□□ -1.64
VPS53Q5VIR6 AC068587.1-201ENST00000483613 781 ntBASIC4.82□□□□□ -1.64
VPS53Q5VIR6 AC084117.1-201ENST00000496975 270 ntTSL 5 BASIC4.82□□□□□ -1.64
VPS53Q5VIR6 AC108078.3-201ENST00000502633 489 ntBASIC4.82□□□□□ -1.64
VPS53Q5VIR6 AC093722.1-201ENST00000504882 489 ntTSL 3 BASIC4.82□□□□□ -1.64
VPS53Q5VIR6 HMGB1P28-201ENST00000507778 552 ntBASIC4.82□□□□□ -1.64
VPS53Q5VIR6 SNORA48.10-201ENST00000516965 160 ntBASIC4.82□□□□□ -1.64
VPS53Q5VIR6 AC120193.1-201ENST00000518988 741 ntTSL 2 BASIC4.82□□□□□ -1.64
VPS53Q5VIR6 AC008802.1-201ENST00000519121 791 ntBASIC4.82□□□□□ -1.64
VPS53Q5VIR6 AP003733.3-201ENST00000524942 788 ntTSL 2 BASIC4.82□□□□□ -1.64
VPS53Q5VIR6 STX3-204ENST00000530221 534 ntTSL 5 BASIC4.82□□□□□ -1.64
VPS53Q5VIR6 PPFIA2-AS1-205ENST00000550938 790 ntTSL 3 BASIC4.82□□□□□ -1.64
VPS53Q5VIR6 AC025265.2-201ENST00000551905 478 ntTSL 3 BASIC4.82□□□□□ -1.64
VPS53Q5VIR6 AL355096.1-201ENST00000553561 447 ntTSL 3 BASIC4.82□□□□□ -1.64
VPS53Q5VIR6 DISC1FP1-201ENST00000561596 545 ntTSL 5 BASIC4.82□□□□□ -1.64
VPS53Q5VIR6 AP001029.2-202ENST00000588197 739 ntTSL 3 BASIC4.82□□□□□ -1.64
VPS53Q5VIR6 AC010649.1-203ENST00000592230 454 ntTSL 2 BASIC4.82□□□□□ -1.64
VPS53Q5VIR6 AC073648.5-201ENST00000603502 305 ntBASIC4.82□□□□□ -1.64
VPS53Q5VIR6 AC128687.2-201ENST00000609657 566 ntBASIC4.82□□□□□ -1.64
VPS53Q5VIR6 IL33-205ENST00000611532 757 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
VPS53Q5VIR6 AC010678.1-201ENST00000614118 713 ntBASIC4.82□□□□□ -1.64
VPS53Q5VIR6 AC099842.1-201ENST00000619919 596 ntBASIC4.82□□□□□ -1.64
VPS53Q5VIR6 AL590227.1-201ENST00000622616 315 ntTSL 5 BASIC4.82□□□□□ -1.64
VPS53Q5VIR6 AC135584.1-201ENST00000624438 333 ntTSL 5 BASIC4.82□□□□□ -1.64
VPS53Q5VIR6 AC092192.1-201ENST00000633154 1018 ntBASIC4.82□□□□□ -1.64
VPS53Q5VIR6 C12orf60-201ENST00000330828 1684 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
VPS53Q5VIR6 NUP35-201ENST00000295119 1633 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
VPS53Q5VIR6 UBA6-201ENST00000322244 9564 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
VPS53Q5VIR6 CKAP5-201ENST00000312055 6532 ntTSL 5 BASIC4.81□□□□□ -1.64
VPS53Q5VIR6 ELL2P4-201ENST00000446870 1376 ntBASIC4.81□□□□□ -1.64
VPS53Q5VIR6 TAB3-204ENST00000378932 3698 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
VPS53Q5VIR6 RPL21P132-201ENST00000331267 462 ntBASIC4.81□□□□□ -1.64
VPS53Q5VIR6 RNA5SP502-201ENST00000362694 119 ntBASIC4.81□□□□□ -1.64
VPS53Q5VIR6 RNU6-216P-201ENST00000363282 104 ntBASIC4.81□□□□□ -1.64
VPS53Q5VIR6 U3.15-201ENST00000365398 212 ntBASIC4.81□□□□□ -1.64
VPS53Q5VIR6 AKAP14-204ENST00000371431 977 ntAPPRIS P3 TSL 1 (best) BASIC4.81□□□□□ -1.64
VPS53Q5VIR6 MIR506-201ENST00000384998 124 ntBASIC4.81□□□□□ -1.64
VPS53Q5VIR6 RPL23AP29-201ENST00000397284 453 ntBASIC4.81□□□□□ -1.64
VPS53Q5VIR6 BPIFC-202ENST00000397450 458 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
VPS53Q5VIR6 ZNF603P-201ENST00000405613 487 ntBASIC4.81□□□□□ -1.64
VPS53Q5VIR6 AL136133.1-201ENST00000413694 376 ntBASIC4.81□□□□□ -1.64
VPS53Q5VIR6 ELOCP17-201ENST00000414751 326 ntBASIC4.81□□□□□ -1.64
VPS53Q5VIR6 RPS3AP9-201ENST00000417027 792 ntBASIC4.81□□□□□ -1.64
VPS53Q5VIR6 AC104777.1-203ENST00000423428 554 ntTSL 3 BASIC4.81□□□□□ -1.64
VPS53Q5VIR6 PSMA2P3-201ENST00000429685 675 ntBASIC4.81□□□□□ -1.64
VPS53Q5VIR6 AL138759.1-201ENST00000432120 645 ntTSL 2 BASIC4.81□□□□□ -1.64
VPS53Q5VIR6 AL080313.1-201ENST00000434947 405 ntTSL 2 BASIC4.81□□□□□ -1.64
VPS53Q5VIR6 RPL18AP17-201ENST00000455326 198 ntBASIC4.81□□□□□ -1.64
VPS53Q5VIR6 RNA5SP269-201ENST00000459032 137 ntBASIC4.81□□□□□ -1.64
VPS53Q5VIR6 KLRA1P-201ENST00000503499 986 ntBASIC4.81□□□□□ -1.64
VPS53Q5VIR6 AC092608.1-201ENST00000503505 267 ntTSL 2 BASIC4.81□□□□□ -1.64
VPS53Q5VIR6 CDC42P4-201ENST00000510507 563 ntBASIC4.81□□□□□ -1.64
VPS53Q5VIR6 FTH1P21-201ENST00000512179 511 ntBASIC4.81□□□□□ -1.64
VPS53Q5VIR6 RNY4P37-201ENST00000516225 96 ntBASIC4.81□□□□□ -1.64
VPS53Q5VIR6 AC027801.4-201ENST00000518420 395 ntTSL 5 BASIC4.81□□□□□ -1.64
VPS53Q5VIR6 PTS-202ENST00000524931 696 ntTSL 3 BASIC4.81□□□□□ -1.64
VPS53Q5VIR6 AP002989.1-201ENST00000533459 562 ntTSL 4 BASIC4.81□□□□□ -1.64
VPS53Q5VIR6 LINC02398-201ENST00000536666 431 ntTSL 3 BASIC4.81□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 93.7 ms