Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 AGGF1P8-201ENST00000562979 1000 ntBASIC4.44□□□□□ -1.7
CTCFP49711 AL031716.1-201ENST00000569106 530 ntTSL 5 BASIC4.44□□□□□ -1.7
CTCFP49711 AC133065.1-201ENST00000572017 575 ntTSL 3 BASIC4.44□□□□□ -1.7
CTCFP49711 MIR5186-201ENST00000577504 120 ntBASIC4.44□□□□□ -1.7
CTCFP49711 MIR4644-201ENST00000579929 84 ntBASIC4.44□□□□□ -1.7
CTCFP49711 AP005901.2-201ENST00000581690 525 ntTSL 3 BASIC4.44□□□□□ -1.7
CTCFP49711 MIR4276-201ENST00000584832 70 ntBASIC4.44□□□□□ -1.7
CTCFP49711 RNU1-30P-201ENST00000606575 163 ntBASIC4.44□□□□□ -1.7
CTCFP49711 AL162274.2-201ENST00000614406 332 ntBASIC4.44□□□□□ -1.7
CTCFP49711 MIR7112-201ENST00000616126 65 ntBASIC4.44□□□□□ -1.7
CTCFP49711 AC090246.1-201ENST00000616499 426 ntBASIC4.44□□□□□ -1.7
CTCFP49711 AL139089.1-201ENST00000620372 975 ntBASIC4.44□□□□□ -1.7
CTCFP49711 COPS2-202ENST00000388901 6628 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
CTCFP49711 OR8D1-202ENST00000641015 8286 ntAPPRIS P1 BASIC4.44□□□□□ -1.7
CTCFP49711 FAM208A-202ENST00000431842 7119 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
CTCFP49711 OTOGL-202ENST00000458043 8083 ntAPPRIS P5 TSL 5 BASIC4.44□□□□□ -1.7
CTCFP49711 TPTE2-201ENST00000255310 1562 ntTSL 5 BASIC4.44□□□□□ -1.7
CTCFP49711 ARHGAP28-202ENST00000314319 5415 ntAPPRIS P2 TSL 5 BASIC4.43□□□□□ -1.7
CTCFP49711 UBA5-201ENST00000264991 2850 ntTSL 5 BASIC4.43□□□□□ -1.7
CTCFP49711 OXR1-206ENST00000449762 2621 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
CTCFP49711 ZBTB26-202ENST00000373656 4443 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
CTCFP49711 VPS13C-202ENST00000261517 13400 ntAPPRIS ALT2 TSL 1 (best) BASIC4.43□□□□□ -1.7
CTCFP49711 TAS2R14-202ENST00000537503 1858 ntAPPRIS P1 BASIC4.43□□□□□ -1.7
CTCFP49711 ASAH1-265ENST00000637922 2297 ntTSL 5 BASIC4.43□□□□□ -1.7
CTCFP49711 AKAP6-201ENST00000280979 15006 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
CTCFP49711 G2E3-201ENST00000206595 5804 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
CTCFP49711 PHTF2-202ENST00000275575 4541 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
CTCFP49711 TMEM251-201ENST00000283534 909 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
CTCFP49711 COX7B2-201ENST00000355591 542 ntAPPRIS P2 TSL 1 (best) BASIC4.43□□□□□ -1.7
CTCFP49711 RNA5SP399-201ENST00000364003 117 ntBASIC4.43□□□□□ -1.7
CTCFP49711 OR1A2-201ENST00000381951 930 ntAPPRIS P1 BASIC4.43□□□□□ -1.7
CTCFP49711 AL138749.1-201ENST00000397864 791 ntTSL 5 BASIC4.43□□□□□ -1.7
CTCFP49711 RNU2-42P-201ENST00000410697 113 ntBASIC4.43□□□□□ -1.7
CTCFP49711 AL162394.1-201ENST00000413271 419 ntTSL 2 BASIC4.43□□□□□ -1.7
CTCFP49711 JKAMPP1-201ENST00000413804 919 ntBASIC4.43□□□□□ -1.7
CTCFP49711 AC097717.1-228ENST00000417006 754 ntTSL 3 BASIC4.43□□□□□ -1.7
CTCFP49711 AC079163.1-201ENST00000418416 407 ntTSL 2 BASIC4.43□□□□□ -1.7
CTCFP49711 RPS15AP40-201ENST00000419621 391 ntBASIC4.43□□□□□ -1.7
CTCFP49711 AL589946.1-201ENST00000421465 420 ntTSL 3 BASIC4.43□□□□□ -1.7
CTCFP49711 MTCO3P1-205ENST00000422088 832 ntBASIC4.43□□□□□ -1.7
CTCFP49711 RBMY1KP-201ENST00000423480 476 ntBASIC4.43□□□□□ -1.7
CTCFP49711 USP9YP11-201ENST00000427537 717 ntBASIC4.43□□□□□ -1.7
CTCFP49711 AL445259.1-202ENST00000434768 379 ntTSL 3 BASIC4.43□□□□□ -1.7
CTCFP49711 ELOCP8-201ENST00000439309 332 ntBASIC4.43□□□□□ -1.7
CTCFP49711 FGF7P5-201ENST00000441829 291 ntBASIC4.43□□□□□ -1.7
CTCFP49711 ELOCP15-201ENST00000442090 332 ntBASIC4.43□□□□□ -1.7
CTCFP49711 Z77249.1-201ENST00000444622 1175 ntBASIC4.43□□□□□ -1.7
CTCFP49711 IGKV1OR-3-201ENST00000446944 348 ntBASIC4.43□□□□□ -1.7
CTCFP49711 AC010235.1-201ENST00000450613 547 ntTSL 3 BASIC4.43□□□□□ -1.7
CTCFP49711 AP001992.1-205ENST00000462248 379 ntBASIC4.43□□□□□ -1.7
CTCFP49711 PTPRG-AS1-202ENST00000466893 823 ntTSL 4 BASIC4.43□□□□□ -1.7
CTCFP49711 AC004924.1-201ENST00000480160 781 ntBASIC4.43□□□□□ -1.7
CTCFP49711 LINC02032-201ENST00000490465 391 ntTSL 2 BASIC4.43□□□□□ -1.7
CTCFP49711 MRPL36-203ENST00000505818 595 ntAPPRIS P1 TSL 3 BASIC4.43□□□□□ -1.7
CTCFP49711 AC099520.1-203ENST00000506976 464 ntTSL 3 BASIC4.43□□□□□ -1.7
CTCFP49711 AC112196.1-201ENST00000515092 832 ntTSL 3 BASIC4.43□□□□□ -1.7
CTCFP49711 MIR2114-201ENST00000516645 80 ntBASIC4.43□□□□□ -1.7
CTCFP49711 AC103843.2-201ENST00000530523 682 ntBASIC4.43□□□□□ -1.7
CTCFP49711 PLCZ1-203ENST00000534932 525 ntTSL 4 BASIC4.43□□□□□ -1.7
CTCFP49711 TIMM9-209ENST00000556367 572 ntTSL 2 BASIC4.43□□□□□ -1.7
CTCFP49711 TRAV15-201ENST00000556680 249 ntBASIC4.43□□□□□ -1.7
CTCFP49711 AL132657.2-201ENST00000564417 358 ntBASIC4.43□□□□□ -1.7
CTCFP49711 AC138915.2-201ENST00000569776 97 ntBASIC4.43□□□□□ -1.7
CTCFP49711 RPL23AP87-202ENST00000573039 466 ntBASIC4.43□□□□□ -1.7
CTCFP49711 AC098617.1-216ENST00000602099 708 ntTSL 5 BASIC4.43□□□□□ -1.7
CTCFP49711 AC091946.2-201ENST00000606105 291 ntBASIC4.43□□□□□ -1.7
CTCFP49711 C1orf185-204ENST00000612209 899 ntAPPRIS ALT2 TSL 2 BASIC4.43□□□□□ -1.7
CTCFP49711 AP002782.1-201ENST00000623107 614 ntBASIC4.43□□□□□ -1.7
CTCFP49711 AC119674.1-207ENST00000641355 633 ntBASIC4.43□□□□□ -1.7
CTCFP49711 SPAM1-205ENST00000439500 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC4.43□□□□□ -1.7
CTCFP49711 ALCAM-207ENST00000486979 1818 ntTSL 5 BASIC4.43□□□□□ -1.7
CTCFP49711 QSER1-201ENST00000399302 9335 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
CTCFP49711 LINC02471-203ENST00000641941 4752 ntBASIC4.43□□□□□ -1.7
CTCFP49711 SEPT7P7-201ENST00000420492 1301 ntBASIC4.43□□□□□ -1.7
CTCFP49711 ATP2C1-202ENST00000359644 3401 ntAPPRIS P3 TSL 1 (best) BASIC4.43□□□□□ -1.7
CTCFP49711 CNTN6-201ENST00000350110 3814 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
CTCFP49711 YWHAZ-219ENST00000522542 1394 ntTSL 2 BASIC4.42□□□□□ -1.7
CTCFP49711 C2orf73-208ENST00000615983 1376 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
CTCFP49711 AC024940.1-206ENST00000632817 4299 ntAPPRIS P5 TSL 5 BASIC4.42□□□□□ -1.7
CTCFP49711 TPTE2-202ENST00000382978 1677 ntTSL 5 BASIC4.42□□□□□ -1.7
CTCFP49711 FAM35DP-201ENST00000323387 2712 ntBASIC4.42□□□□□ -1.7
CTCFP49711 SNORA5B-201ENST00000363786 132 ntBASIC4.42□□□□□ -1.7
CTCFP49711 MIR649-201ENST00000384843 97 ntBASIC4.42□□□□□ -1.7
CTCFP49711 LURAP1L-AS1-201ENST00000417638 799 ntTSL 3 BASIC4.42□□□□□ -1.7
CTCFP49711 HIGD1AP4-201ENST00000430194 280 ntBASIC4.42□□□□□ -1.7
CTCFP49711 LINC01867-201ENST00000435357 604 ntTSL 2 BASIC4.42□□□□□ -1.7
CTCFP49711 NECAP1P2-201ENST00000455668 727 ntBASIC4.42□□□□□ -1.7
CTCFP49711 AC002460.1-201ENST00000504394 370 ntTSL 3 BASIC4.42□□□□□ -1.7
CTCFP49711 TMEM248P1-201ENST00000510579 951 ntBASIC4.42□□□□□ -1.7
CTCFP49711 RNA5SP164-201ENST00000516533 110 ntBASIC4.42□□□□□ -1.7
CTCFP49711 RNU6-1261P-201ENST00000517194 104 ntBASIC4.42□□□□□ -1.7
CTCFP49711 AC013509.1-201ENST00000524269 339 ntTSL 3 BASIC4.42□□□□□ -1.7
CTCFP49711 OR5M7P-201ENST00000526140 972 ntBASIC4.42□□□□□ -1.7
CTCFP49711 AC113192.5-201ENST00000528779 486 ntTSL 2 BASIC4.42□□□□□ -1.7
CTCFP49711 APAF1-207ENST00000547743 651 ntTSL 3 BASIC4.42□□□□□ -1.7
CTCFP49711 PSMA4-206ENST00000558341 719 ntTSL 5 BASIC4.42□□□□□ -1.7
CTCFP49711 LINC01570-201ENST00000561572 434 ntTSL 3 BASIC4.42□□□□□ -1.7
CTCFP49711 AC092138.1-201ENST00000568659 472 ntTSL 2 BASIC4.42□□□□□ -1.7
CTCFP49711 AC012417.1-201ENST00000582307 1039 ntBASIC4.42□□□□□ -1.7
CTCFP49711 LINC01630-204ENST00000582689 539 ntTSL 4 BASIC4.42□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 88 ms