Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 MCF2-202ENST00000370573 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC2.86□□□□□ -1.95
USF1P22415 POLK-204ENST00000504026 1484 ntTSL 1 (best) BASIC2.86□□□□□ -1.95
USF1P22415 ZNF266-204ENST00000590306 3317 ntAPPRIS P1 TSL 1 (best) BASIC2.86□□□□□ -1.95
USF1P22415 C1orf105-203ENST00000367727 985 ntAPPRIS P1 TSL 1 (best) BASIC2.86□□□□□ -1.95
USF1P22415 RPL23AP47-201ENST00000408017 460 ntBASIC2.86□□□□□ -1.95
USF1P22415 AC239803.1-203ENST00000411978 452 ntTSL 2 BASIC2.86□□□□□ -1.95
USF1P22415 AL365184.1-201ENST00000413801 572 ntTSL 3 BASIC2.86□□□□□ -1.95
USF1P22415 AC246680.2-201ENST00000422106 389 ntBASIC2.86□□□□□ -1.95
USF1P22415 AC017002.2-201ENST00000426124 792 ntTSL 2 BASIC2.86□□□□□ -1.95
USF1P22415 PRKG1-AS1-202ENST00000426785 1111 ntTSL 1 (best) BASIC2.86□□□□□ -1.95
USF1P22415 AL020998.1-201ENST00000444923 229 ntTSL 3 BASIC2.86□□□□□ -1.95
USF1P22415 AL357552.1-201ENST00000445254 415 ntBASIC2.86□□□□□ -1.95
USF1P22415 PLCB1-IT1-202ENST00000451443 251 ntTSL 3 BASIC2.86□□□□□ -1.95
USF1P22415 AC104073.1-201ENST00000451988 151 ntBASIC2.86□□□□□ -1.95
USF1P22415 NAP1L1P3-201ENST00000462291 880 ntBASIC2.86□□□□□ -1.95
USF1P22415 RPL23AP67-201ENST00000465341 474 ntBASIC2.86□□□□□ -1.95
USF1P22415 AC078857.1-201ENST00000469870 667 ntBASIC2.86□□□□□ -1.95
USF1P22415 MND1-203ENST00000504860 638 ntTSL 1 (best) BASIC2.86□□□□□ -1.95
USF1P22415 LINC02496-201ENST00000509559 584 ntTSL 3 BASIC2.86□□□□□ -1.95
USF1P22415 APOOP4-201ENST00000513530 597 ntBASIC2.86□□□□□ -1.95
USF1P22415 DUXAP6-201ENST00000553858 601 ntBASIC2.86□□□□□ -1.95
USF1P22415 AL049835.1-201ENST00000555850 514 ntTSL 3 BASIC2.86□□□□□ -1.95
USF1P22415 AC069029.1-201ENST00000558736 263 ntTSL 2 BASIC2.86□□□□□ -1.95
USF1P22415 AC023908.1-201ENST00000559899 567 ntTSL 4 BASIC2.86□□□□□ -1.95
USF1P22415 RN7SL622P-201ENST00000585292 275 ntBASIC2.86□□□□□ -1.95
USF1P22415 AL021368.1-201ENST00000607490 540 ntBASIC2.86□□□□□ -1.95
USF1P22415 STARD13-AS-239ENST00000609588 982 ntTSL 5 BASIC2.86□□□□□ -1.95
USF1P22415 AC135507.2-201ENST00000612443 309 ntBASIC2.86□□□□□ -1.95
USF1P22415 AC090116.1-201ENST00000615679 446 ntBASIC2.86□□□□□ -1.95
USF1P22415 AC022149.2-201ENST00000621061 203 ntBASIC2.86□□□□□ -1.95
USF1P22415 BTG3-AS1-201ENST00000626994 552 ntTSL 4 BASIC2.86□□□□□ -1.95
USF1P22415 NEBL-202ENST00000377122 9216 ntTSL 1 (best) BASIC2.86□□□□□ -1.95
USF1P22415 KIAA1841-202ENST00000356719 2149 ntTSL 5 BASIC2.86□□□□□ -1.95
USF1P22415 CFHR3-201ENST00000367425 1645 ntAPPRIS P1 TSL 1 (best) BASIC2.86□□□□□ -1.95
USF1P22415 VNN1-201ENST00000367928 3106 ntAPPRIS P1 TSL 1 (best) BASIC2.86□□□□□ -1.95
USF1P22415 MAPK6PS3-201ENST00000403865 2162 ntBASIC2.85□□□□□ -1.95
USF1P22415 LINC01416-201ENST00000563553 2310 ntTSL 1 (best) BASIC2.85□□□□□ -1.95
USF1P22415 RNU6-609P-201ENST00000365459 107 ntBASIC2.85□□□□□ -1.95
USF1P22415 AL121978.1-201ENST00000402778 359 ntBASIC2.85□□□□□ -1.95
USF1P22415 RNA5SP129-201ENST00000410276 118 ntBASIC2.85□□□□□ -1.95
USF1P22415 RAD23BP2-201ENST00000416003 1207 ntBASIC2.85□□□□□ -1.95
USF1P22415 GRM7-AS1-201ENST00000420230 430 ntTSL 3 BASIC2.85□□□□□ -1.95
USF1P22415 AC106873.1-201ENST00000420664 459 ntTSL 3 BASIC2.85□□□□□ -1.95
USF1P22415 AL078590.2-202ENST00000422736 568 ntTSL 3 BASIC2.85□□□□□ -1.95
USF1P22415 RPL7P44-201ENST00000424827 742 ntBASIC2.85□□□□□ -1.95
USF1P22415 AC007403.1-201ENST00000427579 567 ntTSL 4 BASIC2.85□□□□□ -1.95
USF1P22415 AL359706.1-201ENST00000437748 315 ntTSL 3 BASIC2.85□□□□□ -1.95
USF1P22415 Z93403.1-202ENST00000440002 713 ntTSL 3 BASIC2.85□□□□□ -1.95
USF1P22415 AC010157.1-201ENST00000440589 527 ntTSL 4 BASIC2.85□□□□□ -1.95
USF1P22415 AL589935.1-212ENST00000450998 525 ntTSL 2 BASIC2.85□□□□□ -1.95
USF1P22415 NEGR1-IT1-201ENST00000453121 534 ntTSL 1 (best) BASIC2.85□□□□□ -1.95
USF1P22415 ARPC3P2-201ENST00000457786 533 ntBASIC2.85□□□□□ -1.95
USF1P22415 AC084357.1-201ENST00000473404 255 ntBASIC2.85□□□□□ -1.95
USF1P22415 AC012181.1-201ENST00000479895 423 ntBASIC2.85□□□□□ -1.95
USF1P22415 RPL7P23-201ENST00000493874 747 ntBASIC2.85□□□□□ -1.95
USF1P22415 AC020893.1-201ENST00000502452 580 ntBASIC2.85□□□□□ -1.95
USF1P22415 SNORA70.19-201ENST00000516717 90 ntBASIC2.85□□□□□ -1.95
USF1P22415 AP006245.1-201ENST00000522549 120 ntBASIC2.85□□□□□ -1.95
USF1P22415 AP002992.1-202ENST00000530842 551 ntTSL 2 BASIC2.85□□□□□ -1.95
USF1P22415 AC027018.1-201ENST00000533978 396 ntTSL 4 BASIC2.85□□□□□ -1.95
USF1P22415 AC009320.1-201ENST00000549070 349 ntTSL 3 BASIC2.85□□□□□ -1.95
USF1P22415 LSM6P2-201ENST00000552208 177 ntBASIC2.85□□□□□ -1.95
USF1P22415 AL160191.1-201ENST00000555480 566 ntTSL 4 BASIC2.85□□□□□ -1.95
USF1P22415 OR4H12P-201ENST00000556269 907 ntBASIC2.85□□□□□ -1.95
USF1P22415 TIMM9-209ENST00000556367 572 ntTSL 2 BASIC2.85□□□□□ -1.95
USF1P22415 NIFKP8-201ENST00000560500 874 ntBASIC2.85□□□□□ -1.95
USF1P22415 AC068875.1-201ENST00000561054 463 ntTSL 3 BASIC2.85□□□□□ -1.95
USF1P22415 AF001550.1-201ENST00000572747 573 ntTSL 4 BASIC2.85□□□□□ -1.95
USF1P22415 MIR4325-201ENST00000583049 90 ntBASIC2.85□□□□□ -1.95
USF1P22415 AC107294.3-201ENST00000609211 526 ntBASIC2.85□□□□□ -1.95
USF1P22415 MAPK10-362ENST00000641864 4484 ntBASIC2.85□□□□□ -1.95
USF1P22415 TRDN-201ENST00000334268 4770 ntAPPRIS P3 TSL 1 (best) BASIC2.85□□□□□ -1.95
USF1P22415 MME-211ENST00000492661 2854 ntAPPRIS P1 TSL 2 BASIC2.85□□□□□ -1.95
USF1P22415 CLCA4-201ENST00000370563 3211 ntAPPRIS P1 TSL 1 (best) BASIC2.85□□□□□ -1.95
USF1P22415 JCHAIN-206ENST00000543780 1406 ntAPPRIS P1 TSL 1 (best) BASIC2.85□□□□□ -1.95
USF1P22415 CCDC30-212ENST00000507855 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC2.84□□□□□ -1.95
USF1P22415 TBC1D31-214ENST00000522420 3167 ntTSL 1 (best) BASIC2.84□□□□□ -1.95
USF1P22415 RMDN2-205ENST00000407257 2280 ntTSL 5 BASIC2.84□□□□□ -1.95
USF1P22415 KCNH7-204ENST00000618399 3713 ntTSL 5 BASIC2.84□□□□□ -1.95
USF1P22415 OR5T2-201ENST00000313264 1248 ntAPPRIS P2 BASIC2.84□□□□□ -1.95
USF1P22415 RNA5SP258-201ENST00000362750 119 ntBASIC2.84□□□□□ -1.95
USF1P22415 RNU6-619P-201ENST00000365146 108 ntBASIC2.84□□□□□ -1.95
USF1P22415 DEFB109C-201ENST00000382575 264 ntBASIC2.84□□□□□ -1.95
USF1P22415 DEFB109B-201ENST00000382656 264 ntBASIC2.84□□□□□ -1.95
USF1P22415 MTND4LP20-201ENST00000402379 270 ntBASIC2.84□□□□□ -1.95
USF1P22415 RSL24D1P1-201ENST00000404972 493 ntBASIC2.84□□□□□ -1.95
USF1P22415 RNU6-55P-201ENST00000411092 107 ntBASIC2.84□□□□□ -1.95
USF1P22415 RNU6-954P-201ENST00000411355 107 ntBASIC2.84□□□□□ -1.95
USF1P22415 AL353678.1-201ENST00000422735 741 ntBASIC2.84□□□□□ -1.95
USF1P22415 AC090952.1-201ENST00000424242 446 ntTSL 3 BASIC2.84□□□□□ -1.95
USF1P22415 AL357514.1-201ENST00000446322 488 ntTSL 3 BASIC2.84□□□□□ -1.95
USF1P22415 HMGB1P15-201ENST00000453854 435 ntBASIC2.84□□□□□ -1.95
USF1P22415 AC104308.1-201ENST00000454621 333 ntBASIC2.84□□□□□ -1.95
USF1P22415 AL133351.1-201ENST00000456189 417 ntTSL 2 BASIC2.84□□□□□ -1.95
USF1P22415 AC092919.1-201ENST00000467896 229 ntTSL 2 BASIC2.84□□□□□ -1.95
USF1P22415 AC087312.1-201ENST00000471411 480 ntBASIC2.84□□□□□ -1.95
USF1P22415 RN7SL504P-201ENST00000494496 287 ntBASIC2.84□□□□□ -1.95
USF1P22415 FCF1P3-201ENST00000496394 590 ntBASIC2.84□□□□□ -1.95
USF1P22415 LINC01612-201ENST00000504509 469 ntTSL 3 BASIC2.84□□□□□ -1.95
USF1P22415 AC018752.1-201ENST00000507813 206 ntTSL 5 BASIC2.84□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 94.4 ms