Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 BTF3P5-201ENST00000457252 467 ntBASIC3.44□□□□□ -1.86
SDC3O75056 RN7SL330P-201ENST00000469709 307 ntBASIC3.44□□□□□ -1.86
SDC3O75056 AL136126.1-201ENST00000473603 402 ntBASIC3.44□□□□□ -1.86
SDC3O75056 RPS29P2-201ENST00000479278 136 ntBASIC3.44□□□□□ -1.86
SDC3O75056 AC093752.1-206ENST00000511823 336 ntBASIC3.44□□□□□ -1.86
SDC3O75056 RN7SKP289-201ENST00000517244 295 ntBASIC3.44□□□□□ -1.86
SDC3O75056 AC108515.1-201ENST00000517407 525 ntTSL 3 BASIC3.44□□□□□ -1.86
SDC3O75056 AC069120.1-201ENST00000521623 379 ntTSL 3 BASIC3.44□□□□□ -1.86
SDC3O75056 LINC02399-201ENST00000547094 400 ntTSL 2 BASIC3.44□□□□□ -1.86
SDC3O75056 LINC01405-202ENST00000547607 674 ntTSL 3 BASIC3.44□□□□□ -1.86
SDC3O75056 AC068875.1-201ENST00000561054 463 ntTSL 3 BASIC3.44□□□□□ -1.86
SDC3O75056 AC025917.1-201ENST00000562062 612 ntTSL 3 BASIC3.44□□□□□ -1.86
SDC3O75056 AC093519.1-201ENST00000566109 298 ntBASIC3.44□□□□□ -1.86
SDC3O75056 AC099489.2-201ENST00000574976 260 ntBASIC3.44□□□□□ -1.86
SDC3O75056 AC134669.2-201ENST00000578584 1008 ntAPPRIS P1 TSL 2 BASIC3.44□□□□□ -1.86
SDC3O75056 AC217774.1-201ENST00000578936 517 ntTSL 4 BASIC3.44□□□□□ -1.86
SDC3O75056 MIR4458HG-202ENST00000605918 1057 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
SDC3O75056 STARD13-AS-239ENST00000609588 982 ntTSL 5 BASIC3.44□□□□□ -1.86
SDC3O75056 AC244517.5-201ENST00000624139 722 ntTSL 3 BASIC3.44□□□□□ -1.86
SDC3O75056 SATB1-AS1-226ENST00000625515 776 ntTSL 5 BASIC3.44□□□□□ -1.86
SDC3O75056 LINC02086-205ENST00000628749 679 ntTSL 5 BASIC3.44□□□□□ -1.86
SDC3O75056 SATB1-AS1-266ENST00000630271 813 ntTSL 5 BASIC3.44□□□□□ -1.86
SDC3O75056 AC099654.8-201ENST00000637757 681 ntBASIC3.44□□□□□ -1.86
SDC3O75056 MFSD8-245ENST00000641743 948 ntBASIC3.44□□□□□ -1.86
SDC3O75056 C5orf42-205ENST00000508244 11062 ntAPPRIS P2 TSL 5 BASIC3.44□□□□□ -1.86
SDC3O75056 MT-ND5-201ENST00000361567 1812 ntAPPRIS P1 BASIC3.44□□□□□ -1.86
SDC3O75056 LINC02431-201ENST00000503929 3601 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
SDC3O75056 EPS15-202ENST00000371730 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC3.44□□□□□ -1.86
SDC3O75056 PRKD3-202ENST00000379066 6111 ntAPPRIS P1 TSL 5 BASIC3.43□□□□□ -1.86
SDC3O75056 LRRC49-222ENST00000560158 1898 ntTSL 5 BASIC3.43□□□□□ -1.86
SDC3O75056 WNK3-205ENST00000620763 5400 ntTSL 5 BASIC3.43□□□□□ -1.86
SDC3O75056 RAD21-210ENST00000523986 2506 ntTSL 2 BASIC3.43□□□□□ -1.86
SDC3O75056 CEP170P1-201ENST00000502249 4587 ntBASIC3.43□□□□□ -1.86
SDC3O75056 CR381670.1-201ENST00000624291 1693 ntBASIC3.43□□□□□ -1.86
SDC3O75056 MYOT-202ENST00000421631 1474 ntTSL 2 BASIC3.43□□□□□ -1.86
SDC3O75056 GNG5P1-201ENST00000255500 204 ntBASIC3.43□□□□□ -1.86
SDC3O75056 RNU4-51P-201ENST00000364206 140 ntBASIC3.43□□□□□ -1.86
SDC3O75056 RNA5SP235-201ENST00000365411 114 ntBASIC3.43□□□□□ -1.86
SDC3O75056 SPRR2D-203ENST00000368757 800 ntAPPRIS P1 TSL 3 BASIC3.43□□□□□ -1.86
SDC3O75056 DFNB59-201ENST00000375129 1202 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
SDC3O75056 TRAV24-201ENST00000390453 343 ntAPPRIS P1 BASIC3.43□□□□□ -1.86
SDC3O75056 RNU2-71P-201ENST00000411395 189 ntBASIC3.43□□□□□ -1.86
SDC3O75056 FCF1P2-201ENST00000415284 583 ntBASIC3.43□□□□□ -1.86
SDC3O75056 AL355989.1-202ENST00000419406 408 ntTSL 3 BASIC3.43□□□□□ -1.86
SDC3O75056 AL078590.2-202ENST00000422736 568 ntTSL 3 BASIC3.43□□□□□ -1.86
SDC3O75056 AC245052.1-201ENST00000426213 410 ntTSL 3 BASIC3.43□□□□□ -1.86
SDC3O75056 AC091862.1-201ENST00000438016 1100 ntBASIC3.43□□□□□ -1.86
SDC3O75056 AC241584.1-201ENST00000438469 1241 ntBASIC3.43□□□□□ -1.86
SDC3O75056 AL662791.1-201ENST00000441992 928 ntBASIC3.43□□□□□ -1.86
SDC3O75056 AC004022.1-201ENST00000447766 1066 ntBASIC3.43□□□□□ -1.86
SDC3O75056 SAMSN1-AS1-201ENST00000449214 840 ntTSL 3 BASIC3.43□□□□□ -1.86
SDC3O75056 AC012081.1-201ENST00000462382 477 ntTSL 3 BASIC3.43□□□□□ -1.86
SDC3O75056 TIPARP-AS1-201ENST00000463449 735 ntTSL 3 BASIC3.43□□□□□ -1.86
SDC3O75056 AC004801.2-202ENST00000463559 283 ntBASIC3.43□□□□□ -1.86
SDC3O75056 RPL23AP14-201ENST00000468281 468 ntBASIC3.43□□□□□ -1.86
SDC3O75056 AC010285.1-201ENST00000470580 392 ntBASIC3.43□□□□□ -1.86
SDC3O75056 AC010301.1-201ENST00000473936 355 ntBASIC3.43□□□□□ -1.86
SDC3O75056 OR5H5P-201ENST00000503164 928 ntBASIC3.43□□□□□ -1.86
SDC3O75056 DYNLL1P6-201ENST00000503440 264 ntBASIC3.43□□□□□ -1.86
SDC3O75056 AC004069.2-201ENST00000505438 1114 ntBASIC3.43□□□□□ -1.86
SDC3O75056 HMGB3P15-201ENST00000507326 574 ntBASIC3.43□□□□□ -1.86
SDC3O75056 AC034223.2-201ENST00000511840 425 ntTSL 3 BASIC3.43□□□□□ -1.86
SDC3O75056 GMPSP1-201ENST00000514075 579 ntBASIC3.43□□□□□ -1.86
SDC3O75056 AC011405.1-201ENST00000514207 248 ntTSL 3 BASIC3.43□□□□□ -1.86
SDC3O75056 LINC02315-201ENST00000515218 696 ntTSL 5 BASIC3.43□□□□□ -1.86
SDC3O75056 RNU6-276P-201ENST00000516114 96 ntBASIC3.43□□□□□ -1.86
SDC3O75056 RNU4ATAC10P-201ENST00000516967 122 ntBASIC3.43□□□□□ -1.86
SDC3O75056 NRG1-IT3-201ENST00000519023 505 ntTSL 3 BASIC3.43□□□□□ -1.86
SDC3O75056 SMILR-201ENST00000533992 553 ntTSL 4 BASIC3.43□□□□□ -1.86
SDC3O75056 AC068768.1-204ENST00000544890 796 ntTSL 4 BASIC3.43□□□□□ -1.86
SDC3O75056 RPL21P12-201ENST00000559810 515 ntBASIC3.43□□□□□ -1.86
SDC3O75056 AC012182.1-201ENST00000570133 895 ntBASIC3.43□□□□□ -1.86
SDC3O75056 AP001180.2-201ENST00000579413 422 ntTSL 5 BASIC3.43□□□□□ -1.86
SDC3O75056 AP005264.4-201ENST00000592203 422 ntTSL 5 BASIC3.43□□□□□ -1.86
SDC3O75056 AC069431.2-201ENST00000604149 1099 ntBASIC3.43□□□□□ -1.86
SDC3O75056 AL590282.1-201ENST00000610379 1136 ntBASIC3.43□□□□□ -1.86
SDC3O75056 RASSF8-215ENST00000611440 852 ntTSL 5 BASIC3.43□□□□□ -1.86
SDC3O75056 AL592295.2-201ENST00000612578 206 ntBASIC3.43□□□□□ -1.86
SDC3O75056 AC073968.1-201ENST00000618594 637 ntBASIC3.43□□□□□ -1.86
SDC3O75056 AC084824.4-201ENST00000620106 731 ntBASIC3.43□□□□□ -1.86
SDC3O75056 AC026634.1-201ENST00000634369 198 ntBASIC3.43□□□□□ -1.86
SDC3O75056 AL445984.1-201ENST00000637834 659 ntBASIC3.43□□□□□ -1.86
SDC3O75056 AC005550.3-201ENST00000451240 3743 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
SDC3O75056 CCDC141-202ENST00000409284 6960 ntAPPRIS P2 TSL 1 (best) BASIC3.43□□□□□ -1.86
SDC3O75056 MBNL1-206ENST00000357472 5256 ntTSL 5 BASIC3.43□□□□□ -1.86
SDC3O75056 MBNL1-223ENST00000498502 5258 ntTSL 5 BASIC3.43□□□□□ -1.86
SDC3O75056 NDST3-201ENST00000296499 5961 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
SDC3O75056 KLRC1-202ENST00000359151 1407 ntAPPRIS P4 TSL 1 (best) BASIC3.43□□□□□ -1.86
SDC3O75056 TRAPPC13-208ENST00000505553 1410 ntAPPRIS ALT1 TSL 1 (best) BASIC3.43□□□□□ -1.86
SDC3O75056 JCHAIN-206ENST00000543780 1406 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
SDC3O75056 AC000367.1-201ENST00000452711 1766 ntBASIC3.43□□□□□ -1.86
SDC3O75056 RAD17-202ENST00000305138 3164 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
SDC3O75056 ZNF483-201ENST00000309235 3655 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
SDC3O75056 LINC02475-202ENST00000512678 2622 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
SDC3O75056 AC093274.1-201ENST00000503488 5454 ntTSL 5 BASIC3.42□□□□□ -1.86
SDC3O75056 OR2L3-201ENST00000359959 2792 ntAPPRIS P1 BASIC3.42□□□□□ -1.86
SDC3O75056 NAIP-205ENST00000508426 4153 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
SDC3O75056 IL18R1-202ENST00000334376 537 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
SDC3O75056 DNAJC12-202ENST00000339758 1064 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
SDC3O75056 RNU6-707P-201ENST00000364647 95 ntBASIC3.42□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 83.6 ms