Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 AL161896.1-201ENST00000597248 508 ntTSL 4 BASIC3.43□□□□□ -1.86
MSH4O15457 AL009028.1-201ENST00000604895 802 ntBASIC3.43□□□□□ -1.86
MSH4O15457 HMGN2P28-201ENST00000606102 262 ntBASIC3.43□□□□□ -1.86
MSH4O15457 AC018926.1-201ENST00000616335 435 ntBASIC3.43□□□□□ -1.86
MSH4O15457 NPPA-AS1_3.1-201ENST00000617059 108 ntBASIC3.43□□□□□ -1.86
MSH4O15457 AC138649.5-201ENST00000637456 137 ntBASIC3.43□□□□□ -1.86
MSH4O15457 DPP10-205ENST00000410059 6278 ntAPPRIS ALT2 TSL 1 (best) BASIC3.43□□□□□ -1.86
MSH4O15457 LEPR-202ENST00000349533 8227 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
MSH4O15457 SLC38A9-203ENST00000416547 2236 ntTSL 5 BASIC3.42□□□□□ -1.86
MSH4O15457 LINC00301-201ENST00000320202 852 ntTSL 2 BASIC3.42□□□□□ -1.86
MSH4O15457 RNA5SP167-201ENST00000365461 116 ntBASIC3.42□□□□□ -1.86
MSH4O15457 SSXP10-201ENST00000402595 565 ntBASIC3.42□□□□□ -1.86
MSH4O15457 SFR1P1-201ENST00000403720 688 ntBASIC3.42□□□□□ -1.86
MSH4O15457 AL355615.1-201ENST00000406187 641 ntBASIC3.42□□□□□ -1.86
MSH4O15457 TEX41-204ENST00000423031 491 ntTSL 4 BASIC3.42□□□□□ -1.86
MSH4O15457 BBS9-205ENST00000425508 1252 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
MSH4O15457 SEPT14P24-201ENST00000447236 180 ntBASIC3.42□□□□□ -1.86
MSH4O15457 AC034195.1-202ENST00000451031 610 ntTSL 3 BASIC3.42□□□□□ -1.86
MSH4O15457 RPL9P32-201ENST00000464118 620 ntBASIC3.42□□□□□ -1.86
MSH4O15457 XACT-201ENST00000468762 497 ntTSL 5 BASIC3.42□□□□□ -1.86
MSH4O15457 AC117440.1-201ENST00000474107 571 ntBASIC3.42□□□□□ -1.86
MSH4O15457 AC092902.1-201ENST00000486999 259 ntBASIC3.42□□□□□ -1.86
MSH4O15457 AC024579.1-201ENST00000503685 371 ntTSL 5 BASIC3.42□□□□□ -1.86
MSH4O15457 AC092542.1-201ENST00000513155 355 ntTSL 2 BASIC3.42□□□□□ -1.86
MSH4O15457 AC107463.1-202ENST00000514526 689 ntTSL 2 BASIC3.42□□□□□ -1.86
MSH4O15457 AC093689.1-201ENST00000514737 246 ntTSL 5 BASIC3.42□□□□□ -1.86
MSH4O15457 MTND1P36-201ENST00000522384 936 ntBASIC3.42□□□□□ -1.86
MSH4O15457 PKIA-AS1-203ENST00000522807 692 ntTSL 3 BASIC3.42□□□□□ -1.86
MSH4O15457 AP002404.1-201ENST00000532005 451 ntBASIC3.42□□□□□ -1.86
MSH4O15457 AL049835.1-201ENST00000555850 514 ntTSL 3 BASIC3.42□□□□□ -1.86
MSH4O15457 AC018371.1-201ENST00000584560 640 ntTSL 3 BASIC3.42□□□□□ -1.86
MSH4O15457 OR4G1P-201ENST00000588632 938 ntBASIC3.42□□□□□ -1.86
MSH4O15457 BNIP3P11-201ENST00000603878 563 ntBASIC3.42□□□□□ -1.86
MSH4O15457 AC027045.1-201ENST00000609065 202 ntTSL 5 BASIC3.42□□□□□ -1.86
MSH4O15457 AC008759.3-201ENST00000613300 508 ntBASIC3.42□□□□□ -1.86
MSH4O15457 CNBD1-207ENST00000620844 876 ntAPPRIS ALT2 TSL 5 BASIC3.42□□□□□ -1.86
MSH4O15457 AC007318.2-201ENST00000620999 243 ntBASIC3.42□□□□□ -1.86
MSH4O15457 AP000943.4-201ENST00000622912 357 ntBASIC3.42□□□□□ -1.86
MSH4O15457 AC139713.2-210ENST00000641741 992 ntBASIC3.42□□□□□ -1.86
MSH4O15457 BX649567.1-201ENST00000642071 1134 ntBASIC3.42□□□□□ -1.86
MSH4O15457 KNL1-202ENST00000399668 7607 ntAPPRIS ALT2 TSL 1 (best) BASIC3.42□□□□□ -1.86
MSH4O15457 NEB-218ENST00000603639 25578 ntAPPRIS ALT2 TSL 5 BASIC3.42□□□□□ -1.86
MSH4O15457 NEB-219ENST00000604864 25578 ntAPPRIS ALT2 TSL 5 BASIC3.42□□□□□ -1.86
MSH4O15457 TEX30-201ENST00000376019 1689 ntTSL 2 BASIC3.42□□□□□ -1.86
MSH4O15457 KIF2A-205ENST00000506857 2219 ntTSL 2 BASIC3.42□□□□□ -1.86
MSH4O15457 DTHD1-202ENST00000456874 3365 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
MSH4O15457 AL353746.1-201ENST00000566293 6881 ntBASIC3.41□□□□□ -1.86
MSH4O15457 PABPC1P7-201ENST00000413177 1513 ntBASIC3.41□□□□□ -1.86
MSH4O15457 AC093010.3-201ENST00000570269 15214 ntBASIC3.41□□□□□ -1.86
MSH4O15457 U3.6-201ENST00000363622 211 ntBASIC3.41□□□□□ -1.86
MSH4O15457 AC007161.1-201ENST00000418534 1061 ntTSL 3 BASIC3.41□□□□□ -1.86
MSH4O15457 AC104777.1-203ENST00000423428 554 ntTSL 3 BASIC3.41□□□□□ -1.86
MSH4O15457 TTTY20-201ENST00000434487 259 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
MSH4O15457 AC012070.1-201ENST00000442062 427 ntTSL 3 BASIC3.41□□□□□ -1.86
MSH4O15457 HMGB3P8-201ENST00000449709 577 ntBASIC3.41□□□□□ -1.86
MSH4O15457 HMGN3P1-201ENST00000453847 193 ntBASIC3.41□□□□□ -1.86
MSH4O15457 TVP23BP2-201ENST00000455082 615 ntBASIC3.41□□□□□ -1.86
MSH4O15457 AL136126.1-201ENST00000473603 402 ntBASIC3.41□□□□□ -1.86
MSH4O15457 RNF138P1-201ENST00000502765 546 ntBASIC3.41□□□□□ -1.86
MSH4O15457 LINC02267-202ENST00000522173 799 ntTSL 3 BASIC3.41□□□□□ -1.86
MSH4O15457 LINCR-0001-203ENST00000524047 545 ntTSL 4 BASIC3.41□□□□□ -1.86
MSH4O15457 AP002004.1-207ENST00000531371 526 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
MSH4O15457 UNC13C-202ENST00000539562 938 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
MSH4O15457 AC073912.2-201ENST00000542821 317 ntTSL 3 BASIC3.41□□□□□ -1.86
MSH4O15457 AC073487.1-201ENST00000547009 529 ntTSL 4 BASIC3.41□□□□□ -1.86
MSH4O15457 AC012404.1-201ENST00000560876 476 ntTSL 3 BASIC3.41□□□□□ -1.86
MSH4O15457 AC006270.2-201ENST00000578523 652 ntBASIC3.41□□□□□ -1.86
MSH4O15457 AC006116.9-201ENST00000591630 649 ntTSL 5 BASIC3.41□□□□□ -1.86
MSH4O15457 AC022146.1-201ENST00000595307 847 ntBASIC3.41□□□□□ -1.86
MSH4O15457 CCDC178-205ENST00000406524 3039 ntAPPRIS ALT2 TSL 5 BASIC3.41□□□□□ -1.86
MSH4O15457 IL23R-205ENST00000637002 2208 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
MSH4O15457 LRRTM2-201ENST00000274711 6017 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
MSH4O15457 CEP85L-202ENST00000368488 7118 ntTSL 5 BASIC3.41□□□□□ -1.86
MSH4O15457 DCLRE1A-202ENST00000369305 4241 ntAPPRIS P1 TSL 5 BASIC3.41□□□□□ -1.86
MSH4O15457 LINC01021-204ENST00000512067 1610 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
MSH4O15457 KTN1-206ENST00000413890 4473 ntAPPRIS ALT2 TSL 5 BASIC3.4□□□□□ -1.86
MSH4O15457 SLC8A1-207ENST00000406785 20987 ntTSL 1 (best) BASIC3.4□□□□□ -1.86
MSH4O15457 AC004972.1-201ENST00000623934 2209 ntBASIC3.4□□□□□ -1.86
MSH4O15457 MME-201ENST00000360490 2360 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.86
MSH4O15457 LUM-201ENST00000266718 3008 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.86
MSH4O15457 OR1L1-201ENST00000309623 933 ntAPPRIS P1 BASIC3.4□□□□□ -1.87
MSH4O15457 RNU5B-1-201ENST00000363286 116 ntBASIC3.4□□□□□ -1.87
MSH4O15457 SNORD6-201ENST00000365444 73 ntBASIC3.4□□□□□ -1.87
MSH4O15457 OR1L1-202ENST00000373686 1083 ntBASIC3.4□□□□□ -1.87
MSH4O15457 RNU6-1226P-201ENST00000384317 107 ntBASIC3.4□□□□□ -1.87
MSH4O15457 RNU6-549P-201ENST00000384433 107 ntBASIC3.4□□□□□ -1.87
MSH4O15457 RNU6-441P-201ENST00000384545 106 ntBASIC3.4□□□□□ -1.87
MSH4O15457 MIR1250-201ENST00000408098 113 ntBASIC3.4□□□□□ -1.87
MSH4O15457 RPL7P8-201ENST00000411964 730 ntBASIC3.4□□□□□ -1.87
MSH4O15457 RPL31P2-201ENST00000413849 377 ntBASIC3.4□□□□□ -1.87
MSH4O15457 FNDC1-IT1-201ENST00000419703 516 ntTSL 3 BASIC3.4□□□□□ -1.87
MSH4O15457 AC009237.2-201ENST00000421358 284 ntBASIC3.4□□□□□ -1.87
MSH4O15457 AC233981.1-201ENST00000423224 461 ntBASIC3.4□□□□□ -1.87
MSH4O15457 RPL7P44-201ENST00000424827 742 ntBASIC3.4□□□□□ -1.87
MSH4O15457 AL583835.2-201ENST00000435483 500 ntTSL 2 BASIC3.4□□□□□ -1.87
MSH4O15457 RPL23AP22-201ENST00000437556 453 ntBASIC3.4□□□□□ -1.87
MSH4O15457 AL592437.1-201ENST00000443781 492 ntBASIC3.4□□□□□ -1.87
MSH4O15457 RPL7P59-201ENST00000447700 943 ntBASIC3.4□□□□□ -1.87
MSH4O15457 AL442647.1-201ENST00000449485 481 ntTSL 5 BASIC3.4□□□□□ -1.87
MSH4O15457 AL392046.1-203ENST00000450106 651 ntTSL 2 BASIC3.4□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 140.4 ms