Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 RPL7P12-201ENST00000446719 750 ntBASIC3.93□□□□□ -1.78
CCDC88BA6NC98 NPM1P49-201ENST00000448027 714 ntBASIC3.93□□□□□ -1.78
CCDC88BA6NC98 ANKRD7-204ENST00000477532 744 ntTSL 5 BASIC3.93□□□□□ -1.78
CCDC88BA6NC98 AL160262.1-201ENST00000522264 254 ntTSL 3 BASIC3.93□□□□□ -1.78
CCDC88BA6NC98 AF117829.1-209ENST00000523995 767 ntTSL 2 BASIC3.93□□□□□ -1.78
CCDC88BA6NC98 MACF1-204ENST00000372915 23440 ntAPPRIS ALT2 TSL 5 BASIC3.93□□□□□ -1.78
CCDC88BA6NC98 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC3.93□□□□□ -1.78
CCDC88BA6NC98 DENND4A-202ENST00000443035 8665 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
CCDC88BA6NC98 CDC27P2-201ENST00000425026 1922 ntBASIC3.93□□□□□ -1.78
CCDC88BA6NC98 AC009487.4-201ENST00000624969 3585 ntBASIC3.93□□□□□ -1.78
CCDC88BA6NC98 FTX-214ENST00000638437 12267 ntTSL 5 BASIC3.93□□□□□ -1.78
CCDC88BA6NC98 RNA5SP88-201ENST00000365560 109 ntBASIC3.92□□□□□ -1.78
CCDC88BA6NC98 U8.13-201ENST00000390842 128 ntBASIC3.92□□□□□ -1.78
CCDC88BA6NC98 FAM26D-203ENST00000405399 1165 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
CCDC88BA6NC98 SNORA79B-201ENST00000410557 148 ntBASIC3.92□□□□□ -1.78
CCDC88BA6NC98 LINC01350-201ENST00000436955 642 ntTSL 3 BASIC3.92□□□□□ -1.78
CCDC88BA6NC98 LINC00430-201ENST00000457672 597 ntTSL 3 BASIC3.92□□□□□ -1.78
CCDC88BA6NC98 EIF2S2P4-201ENST00000461070 984 ntBASIC3.92□□□□□ -1.78
CCDC88BA6NC98 LEKR1-206ENST00000483177 546 ntTSL 3 BASIC3.92□□□□□ -1.78
CCDC88BA6NC98 MEG8-218ENST00000556720 456 ntTSL 3 BASIC3.92□□□□□ -1.78
CCDC88BA6NC98 AL160394.1-201ENST00000624765 724 ntBASIC3.92□□□□□ -1.78
CCDC88BA6NC98 RICTOR-201ENST00000296782 7505 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
CCDC88BA6NC98 FAM208A-202ENST00000431842 7119 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
CCDC88BA6NC98 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
CCDC88BA6NC98 GAPT-201ENST00000318469 2119 ntAPPRIS P1 BASIC3.92□□□□□ -1.78
CCDC88BA6NC98 IL6ST-205ENST00000381294 2574 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
CCDC88BA6NC98 ZNF72P-201ENST00000425869 1908 ntBASIC3.92□□□□□ -1.78
CCDC88BA6NC98 AL512646.1-201ENST00000269395 1077 ntBASIC3.92□□□□□ -1.78
CCDC88BA6NC98 XIST-201ENST00000416330 750 ntTSL 2 BASIC3.92□□□□□ -1.78
CCDC88BA6NC98 AL360169.1-201ENST00000435116 143 ntTSL 5 BASIC3.92□□□□□ -1.78
CCDC88BA6NC98 LINC01867-201ENST00000435357 604 ntTSL 2 BASIC3.92□□□□□ -1.78
CCDC88BA6NC98 LINC01688-201ENST00000435492 259 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
CCDC88BA6NC98 AL357520.1-201ENST00000441557 453 ntBASIC3.92□□□□□ -1.78
CCDC88BA6NC98 AC004160.1-211ENST00000445839 565 ntTSL 4 BASIC3.92□□□□□ -1.78
CCDC88BA6NC98 AC020900.1-201ENST00000502568 565 ntTSL 4 BASIC3.92□□□□□ -1.78
CCDC88BA6NC98 LINC02465-201ENST00000507099 532 ntTSL 4 BASIC3.92□□□□□ -1.78
CCDC88BA6NC98 AC007876.1-201ENST00000527562 983 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
CCDC88BA6NC98 AC107918.3-201ENST00000533272 382 ntBASIC3.92□□□□□ -1.78
CCDC88BA6NC98 AC117529.2-201ENST00000512159 2068 ntBASIC3.91□□□□□ -1.78
CCDC88BA6NC98 ZBTB6-201ENST00000373659 4106 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
CCDC88BA6NC98 LPP-221ENST00000618621 18277 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
CCDC88BA6NC98 LPP-222ENST00000640853 18277 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
CCDC88BA6NC98 SNORA67.3-201ENST00000384366 140 ntBASIC3.91□□□□□ -1.78
CCDC88BA6NC98 NDUFB4P5-201ENST00000415445 361 ntBASIC3.91□□□□□ -1.78
CCDC88BA6NC98 AIMP1P1-201ENST00000418670 937 ntBASIC3.91□□□□□ -1.78
CCDC88BA6NC98 RPS6P12-201ENST00000432491 726 ntBASIC3.91□□□□□ -1.78
CCDC88BA6NC98 AC098826.1-201ENST00000433943 471 ntBASIC3.91□□□□□ -1.78
CCDC88BA6NC98 AC114316.1-201ENST00000511323 278 ntTSL 5 BASIC3.91□□□□□ -1.78
CCDC88BA6NC98 IGLVIV-66-1-201ENST00000521832 460 ntBASIC3.91□□□□□ -1.78
CCDC88BA6NC98 MTERF3-205ENST00000524341 776 ntTSL 3 BASIC3.91□□□□□ -1.78
CCDC88BA6NC98 AC019227.1-201ENST00000526902 510 ntBASIC3.91□□□□□ -1.78
CCDC88BA6NC98 AC012313.1-202ENST00000597309 423 ntTSL 3 BASIC3.91□□□□□ -1.78
CCDC88BA6NC98 CR589904.2-201ENST00000612533 440 ntBASIC3.91□□□□□ -1.78
CCDC88BA6NC98 AC084035.1-201ENST00000634543 607 ntBASIC3.91□□□□□ -1.78
CCDC88BA6NC98 ORC3-201ENST00000257789 2501 ntAPPRIS P3 TSL 1 (best) BASIC3.91□□□□□ -1.78
CCDC88BA6NC98 OR9G4-204ENST00000641668 2608 ntAPPRIS P1 BASIC3.9□□□□□ -1.78
CCDC88BA6NC98 PRKG2-206ENST00000545647 3852 ntTSL 5 BASIC3.9□□□□□ -1.78
CCDC88BA6NC98 MTATP6P11-201ENST00000428071 670 ntBASIC3.9□□□□□ -1.79
CCDC88BA6NC98 HMGB1P15-201ENST00000453854 435 ntBASIC3.9□□□□□ -1.79
CCDC88BA6NC98 XKRY-201ENST00000510392 1100 ntBASIC3.9□□□□□ -1.79
CCDC88BA6NC98 AP003467.2-201ENST00000520175 319 ntBASIC3.9□□□□□ -1.79
CCDC88BA6NC98 OR5BN1P-201ENST00000532955 829 ntBASIC3.9□□□□□ -1.79
CCDC88BA6NC98 MSMB-201ENST00000581478 386 ntTSL 1 (best) BASIC3.9□□□□□ -1.79
CCDC88BA6NC98 AC002076.2-201ENST00000617362 122 ntBASIC3.9□□□□□ -1.79
CCDC88BA6NC98 AC093775.1-201ENST00000624154 1868 ntBASIC3.9□□□□□ -1.79
CCDC88BA6NC98 TLK1-206ENST00000434911 2156 ntTSL 2 BASIC3.9□□□□□ -1.79
CCDC88BA6NC98 CEP44-203ENST00000426172 3037 ntTSL 5 BASIC3.89□□□□□ -1.79
CCDC88BA6NC98 TUBD1-214ENST00000592426 1460 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
CCDC88BA6NC98 METTL18-201ENST00000303469 1426 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
CCDC88BA6NC98 AC093151.1-201ENST00000427711 313 ntBASIC3.89□□□□□ -1.79
CCDC88BA6NC98 AC092045.1-201ENST00000495716 1231 ntBASIC3.89□□□□□ -1.79
CCDC88BA6NC98 ZNF131-215ENST00000509931 970 ntTSL 2 BASIC3.89□□□□□ -1.79
CCDC88BA6NC98 AC104002.1-201ENST00000557025 380 ntTSL 3 BASIC3.89□□□□□ -1.79
CCDC88BA6NC98 AC012182.1-201ENST00000570133 895 ntBASIC3.89□□□□□ -1.79
CCDC88BA6NC98 EAF1-AS1-207ENST00000599742 772 ntTSL 5 BASIC3.89□□□□□ -1.79
CCDC88BA6NC98 UBE2Q2P2-203ENST00000613592 761 ntBASIC3.89□□□□□ -1.79
CCDC88BA6NC98 PTPN12-206ENST00000435495 2526 ntTSL 2 BASIC3.89□□□□□ -1.79
CCDC88BA6NC98 SULT1E1-201ENST00000226444 1780 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
CCDC88BA6NC98 GABRG2-215ENST00000639213 9960 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
CCDC88BA6NC98 AC100800.1-201ENST00000524252 2054 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
CCDC88BA6NC98 DST-204ENST00000361203 22431 ntAPPRIS ALT2 TSL 5 BASIC3.88□□□□□ -1.79
CCDC88BA6NC98 AL356292.1-201ENST00000283110 373 ntBASIC3.88□□□□□ -1.79
CCDC88BA6NC98 RNU6-984P-201ENST00000363236 109 ntBASIC3.88□□□□□ -1.79
CCDC88BA6NC98 TTTY16-201ENST00000437686 192 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
CCDC88BA6NC98 MUPP-201ENST00000438111 566 ntBASIC3.88□□□□□ -1.79
CCDC88BA6NC98 AC099677.4-201ENST00000446786 380 ntTSL 3 BASIC3.88□□□□□ -1.79
CCDC88BA6NC98 RPS27P27-201ENST00000498779 255 ntBASIC3.88□□□□□ -1.79
CCDC88BA6NC98 SCARNA16.3-201ENST00000516595 184 ntBASIC3.88□□□□□ -1.79
CCDC88BA6NC98 HSPE1P18-201ENST00000517602 280 ntBASIC3.88□□□□□ -1.79
CCDC88BA6NC98 HMGB3P26-201ENST00000560051 582 ntBASIC3.88□□□□□ -1.79
CCDC88BA6NC98 EAF1-AS1-211ENST00000610011 316 ntTSL 5 BASIC3.88□□□□□ -1.79
CCDC88BA6NC98 MTCO1P9-201ENST00000505577 1534 ntBASIC3.87□□□□□ -1.79
CCDC88BA6NC98 TRAJ7-201ENST00000390530 59 ntAPPRIS P1 BASIC3.87□□□□□ -1.79
CCDC88BA6NC98 FBXO11-201ENST00000402508 3844 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
CCDC88BA6NC98 ZFAND6-208ENST00000558688 780 ntTSL 2 BASIC3.87□□□□□ -1.79
CCDC88BA6NC98 ZNF667-AS1-209ENST00000601875 495 ntTSL 3 BASIC3.87□□□□□ -1.79
CCDC88BA6NC98 AC103710.2-201ENST00000609912 942 ntBASIC3.87□□□□□ -1.79
CCDC88BA6NC98 AC103710.1-201ENST00000610003 901 ntBASIC3.87□□□□□ -1.79
CCDC88BA6NC98 MIR6845-201ENST00000613182 61 ntBASIC3.87□□□□□ -1.79
CCDC88BA6NC98 VN1R9P-201ENST00000614184 867 ntBASIC3.87□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 95.4 ms